Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46796 * 2 1 4 4 N 1.46498 * 109.47203 * 119.99967 * 2 1 3 5 5 C 1.34267 * 125.75310 * 275.31881 * 4 2 1 6 6 C 1.38040 * 107.41624 * 180.14889 * 5 4 2 7 7 C 1.47431 * 126.41565 * 179.87441 * 6 5 4 8 8 O 1.21601 * 119.99916 * 4.73988 * 7 6 5 9 9 N 1.34778 * 120.00009 * 184.74253 * 7 6 5 10 10 C 1.46498 * 119.99958 * 185.02574 * 9 7 6 11 11 C 1.52993 * 109.47168 * 184.99571 * 10 9 7 12 12 C 1.50704 * 115.55042 * 54.24678 * 11 10 9 13 13 H 1.07997 * 120.00208 * 215.59432 * 12 11 10 14 14 C 1.37878 * 119.99674 * 35.31828 * 12 11 10 15 15 N 1.31514 * 120.00042 * 355.78009 * 14 12 11 16 16 Si 1.86797 * 120.00035 * 175.78004 * 14 12 11 17 17 H 1.48497 * 109.47373 * 59.99532 * 16 14 12 18 18 H 1.48495 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47178 * 299.99823 * 16 14 12 20 20 C 1.53008 * 117.50059 * 199.91883 * 11 10 9 21 21 C 1.53000 * 117.49967 * 268.57826 * 11 10 9 22 22 C 1.41291 * 107.17151 * 359.60388 * 6 5 4 23 23 N 1.30456 * 108.02172 * 0.24654 * 22 6 5 24 24 H 1.09000 * 109.47104 * 299.99812 * 1 2 3 25 25 H 1.08998 * 109.47159 * 60.00005 * 1 2 3 26 26 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 240.00188 * 2 1 3 28 28 H 1.08999 * 109.46701 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47262 * 299.99932 * 3 2 1 30 30 H 1.09000 * 109.47141 * 60.00210 * 3 2 1 31 31 H 1.07996 * 126.28934 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99782 * 5.03344 * 9 7 6 33 33 H 1.08999 * 109.46642 * 64.99832 * 10 9 7 34 34 H 1.09000 * 109.47110 * 305.00089 * 10 9 7 35 35 H 0.97002 * 120.00328 * 185.00142 * 15 14 12 36 36 H 1.09001 * 117.49418 * 215.00893 * 20 11 10 37 37 H 1.08996 * 117.49497 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.50237 * 359.97438 * 21 11 10 39 39 H 1.09002 * 117.49718 * 144.97367 * 21 11 10 40 40 H 1.07994 * 125.99195 * 180.21003 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1846 -0.1376 2.4083 6 6 2.6626 -1.1222 3.2495 7 6 2.9932 -0.9683 4.6780 8 8 2.7699 0.0847 5.2437 9 7 3.5428 -1.9947 5.3569 10 6 3.7698 -1.8807 6.7997 11 6 4.5115 -3.1222 7.2990 12 6 5.7972 -3.4436 6.5816 13 1 6.0814 -4.4725 6.4173 14 6 6.6081 -2.4240 6.1300 15 7 6.2206 -1.1731 6.2509 16 14 8.2570 -2.8193 5.3463 17 1 8.0440 -3.6669 4.1457 18 1 8.9314 -1.5575 4.9488 19 1 9.1068 -3.5480 6.3221 20 6 4.4405 -3.4335 8.7954 21 6 3.6671 -4.2974 7.7960 22 6 2.7696 -2.3068 2.4868 23 7 2.3847 -2.0391 1.2694 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.9842 0.8894 2.6753 32 1 3.7883 -2.8088 4.8901 33 1 2.8116 -1.7991 7.3128 34 1 4.3683 -0.9931 7.0043 35 1 6.7561 -0.4602 5.8689 36 1 5.3239 -3.8706 9.2609 37 1 3.8651 -2.7540 9.4240 38 1 2.5832 -4.1859 7.7677 39 1 4.0414 -5.3029 7.6037 40 1 3.1109 -3.2656 2.8480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431164396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = 59.896685 kcal Electronic energy + Delta-G solvation = -21549.307452 eV Core-core repulsion = 18366.579176 eV Total energy + Delta-G solvation = -3182.728275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14486 -38.27987 -36.53188 -35.78079 -32.85989 -32.10382 -30.25573 -29.87955 -27.63014 -26.06578 -25.31393 -23.09234 -21.82035 -21.18352 -19.84253 -19.29040 -19.14065 -17.52517 -16.26357 -15.42972 -15.27610 -14.87533 -14.74888 -14.66451 -14.14263 -13.83060 -13.63216 -13.07241 -12.90622 -12.65282 -12.60232 -12.34453 -12.24092 -11.71697 -11.62552 -11.45377 -11.34789 -11.01439 -10.75933 -10.69291 -10.47786 -10.18696 -9.63941 -9.36740 -9.03805 -8.83713 -8.78339 -8.38754 -8.22157 -7.64717 -5.92148 -4.13333 1.88456 2.43292 2.59713 3.27200 3.34574 3.35498 4.17856 4.31620 4.34481 4.47711 4.59112 4.75570 4.89719 4.99390 5.11433 5.15892 5.29532 5.36474 5.50657 5.53402 5.65140 5.71144 5.81793 5.85675 6.07832 6.22030 6.37543 6.60138 6.66628 6.70860 6.79109 6.95389 7.04218 7.18958 7.30925 7.65927 7.77458 7.81985 8.05561 8.37301 8.74548 8.91202 9.39442 9.50192 10.95992 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.004859 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.098970 B = 5761.040216 C = 6364.412154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 C -0.168 4.168 4 N -0.363 5.363 5 C 0.114 3.886 6 C -0.273 4.273 7 C 0.583 3.417 8 O -0.572 6.572 9 N -0.676 5.676 10 C 0.166 3.834 11 C 0.038 3.962 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.076 3.924 15 N -0.863 5.863 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.200 4.200 21 C -0.213 4.213 22 C 0.081 3.919 23 N -0.306 5.306 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.395 0.605 33 H 0.016 0.984 34 H 0.117 0.883 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 2.688 -11.775 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 C -0.226 4.226 4 N -0.144 5.144 5 C -0.036 4.036 6 C -0.288 4.288 7 C 0.369 3.631 8 O -0.453 6.453 9 N -0.322 5.322 10 C 0.043 3.957 11 C 0.037 3.963 12 C -0.536 4.536 13 H 0.078 0.922 14 C -0.129 4.129 15 N -0.499 5.499 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.239 4.239 21 C -0.250 4.250 22 C -0.107 4.107 23 N -0.126 5.126 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.229 0.771 33 H 0.034 0.966 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.432 3.215 -12.635 16.092 hybrid contribution 1.215 -0.363 0.241 1.290 sum -8.217 2.853 -12.395 15.142 Atomic orbital electron populations 1.22251 0.93589 1.03375 1.03133 1.21287 0.94835 0.92831 0.85830 1.22235 1.02640 0.93942 1.03776 1.48644 1.49860 1.07670 1.08239 1.22771 0.96763 0.99539 0.84540 1.20593 1.17114 0.94206 0.96859 1.17086 0.78059 0.83860 0.84116 1.90675 1.57047 1.27435 1.70175 1.45366 1.59924 1.16739 1.10162 1.21045 0.95465 1.01307 0.77869 1.19237 0.94730 0.90831 0.91497 1.20442 1.02812 0.92714 1.37676 0.92217 1.24985 0.97733 0.94961 0.95187 1.69851 1.37949 0.98935 1.43149 0.86655 0.84154 0.77602 0.79584 1.20225 1.21316 1.20223 1.22941 1.01437 1.04048 0.95449 1.22951 0.96362 0.96945 1.08731 1.24122 0.97058 0.99276 0.90203 1.77085 1.21869 0.92832 1.20806 0.91700 0.90505 0.91546 0.87897 0.91256 0.89969 0.91206 0.80209 0.77084 0.96578 0.86566 0.92638 0.90298 0.91505 0.91362 0.90681 0.79374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.52 37.16 0.35 -0.95 16 2 C 0.15 1.45 3.91 -67.93 -0.27 1.18 16 3 C -0.17 -1.27 8.83 37.16 0.33 -0.94 16 4 N -0.36 -4.99 3.49 -54.31 -0.19 -5.18 16 5 C 0.11 1.75 10.40 -16.56 -0.17 1.58 16 6 C -0.27 -4.96 6.12 -105.07 -0.64 -5.60 16 7 C 0.58 12.77 7.81 -12.52 -0.10 12.67 16 8 O -0.57 -14.27 16.88 5.28 0.09 -14.18 16 9 N -0.68 -14.89 5.01 -61.39 -0.31 -15.19 16 10 C 0.17 3.99 4.62 -4.05 -0.02 3.97 16 11 C 0.04 0.89 2.04 -155.66 -0.32 0.58 16 12 C -0.50 -12.74 8.44 -34.44 -0.29 -13.03 16 13 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.08 1.97 5.31 -17.82 -0.09 1.88 16 15 N -0.86 -23.37 10.11 55.43 0.56 -22.81 16 16 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.20 -4.40 9.96 -26.69 -0.27 -4.67 16 21 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 22 C 0.08 1.32 11.50 -16.98 -0.20 1.12 16 23 N -0.31 -4.85 12.50 30.86 0.39 -4.47 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.53 7.13 -51.93 -0.37 0.16 16 31 H 0.18 2.43 7.24 -52.49 -0.38 2.05 16 32 H 0.40 8.19 7.13 -40.82 -0.29 7.90 16 33 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 3.20 5.89 -51.93 -0.31 2.89 16 35 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.19 2.67 7.55 -52.49 -0.40 2.28 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -30.73 337.81 -7.27 -38.01 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.94 Total: 10.17 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.94 Total: -6.89 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.45 Total: -47.65 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.73 -7.27 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.905 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds