Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46796 * 2 1 4 4 N 1.46498 * 109.47203 * 119.99967 * 2 1 3 5 5 C 1.34267 * 125.75310 * 275.31881 * 4 2 1 6 6 C 1.38040 * 107.41624 * 180.14889 * 5 4 2 7 7 C 1.47431 * 126.41565 * 179.87441 * 6 5 4 8 8 O 1.21601 * 119.99916 * 4.73988 * 7 6 5 9 9 N 1.34778 * 120.00009 * 184.74253 * 7 6 5 10 10 C 1.46498 * 119.99958 * 185.02574 * 9 7 6 11 11 C 1.52993 * 109.47168 * 184.99571 * 10 9 7 12 12 C 1.50704 * 115.55042 * 54.24678 * 11 10 9 13 13 H 1.07997 * 120.00208 * 215.59432 * 12 11 10 14 14 C 1.37878 * 119.99674 * 35.31828 * 12 11 10 15 15 N 1.31514 * 120.00042 * 355.78009 * 14 12 11 16 16 Si 1.86797 * 120.00035 * 175.78004 * 14 12 11 17 17 H 1.48497 * 109.47373 * 59.99532 * 16 14 12 18 18 H 1.48495 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47178 * 299.99823 * 16 14 12 20 20 C 1.53008 * 117.50059 * 199.91883 * 11 10 9 21 21 C 1.53000 * 117.49967 * 268.57826 * 11 10 9 22 22 C 1.41291 * 107.17151 * 359.60388 * 6 5 4 23 23 N 1.30456 * 108.02172 * 0.24654 * 22 6 5 24 24 H 1.09000 * 109.47104 * 299.99812 * 1 2 3 25 25 H 1.08998 * 109.47159 * 60.00005 * 1 2 3 26 26 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 240.00188 * 2 1 3 28 28 H 1.08999 * 109.46701 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47262 * 299.99932 * 3 2 1 30 30 H 1.09000 * 109.47141 * 60.00210 * 3 2 1 31 31 H 1.07996 * 126.28934 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99782 * 5.03344 * 9 7 6 33 33 H 1.08999 * 109.46642 * 64.99832 * 10 9 7 34 34 H 1.09000 * 109.47110 * 305.00089 * 10 9 7 35 35 H 0.97002 * 120.00328 * 185.00142 * 15 14 12 36 36 H 1.09001 * 117.49418 * 215.00893 * 20 11 10 37 37 H 1.08996 * 117.49497 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.50237 * 359.97438 * 21 11 10 39 39 H 1.09002 * 117.49718 * 144.97367 * 21 11 10 40 40 H 1.07994 * 125.99195 * 180.21003 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1846 -0.1376 2.4083 6 6 2.6626 -1.1222 3.2495 7 6 2.9932 -0.9683 4.6780 8 8 2.7699 0.0847 5.2437 9 7 3.5428 -1.9947 5.3569 10 6 3.7698 -1.8807 6.7997 11 6 4.5115 -3.1222 7.2990 12 6 5.7972 -3.4436 6.5816 13 1 6.0814 -4.4725 6.4173 14 6 6.6081 -2.4240 6.1300 15 7 6.2206 -1.1731 6.2509 16 14 8.2570 -2.8193 5.3463 17 1 8.0440 -3.6669 4.1457 18 1 8.9314 -1.5575 4.9488 19 1 9.1068 -3.5480 6.3221 20 6 4.4405 -3.4335 8.7954 21 6 3.6671 -4.2974 7.7960 22 6 2.7696 -2.3068 2.4868 23 7 2.3847 -2.0391 1.2694 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.9842 0.8894 2.6753 32 1 3.7883 -2.8088 4.8901 33 1 2.8116 -1.7991 7.3128 34 1 4.3683 -0.9931 7.0043 35 1 6.7561 -0.4602 5.8689 36 1 5.3239 -3.8706 9.2609 37 1 3.8651 -2.7540 9.4240 38 1 2.5832 -4.1859 7.7677 39 1 4.0414 -5.3029 7.6037 40 1 3.1109 -3.2656 2.8480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431164396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = 41.168042 kcal Electronic energy + Delta-G solvation = -21550.119587 eV Core-core repulsion = 18366.579176 eV Total energy + Delta-G solvation = -3183.540410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36470 -39.99809 -38.31015 -36.68284 -34.63828 -34.06006 -31.41366 -31.14103 -28.26000 -27.84293 -27.18220 -24.26742 -23.16483 -22.87927 -21.09008 -20.85444 -20.75504 -18.99574 -17.94858 -16.74061 -16.67138 -16.46757 -16.33480 -15.93366 -15.55006 -15.33428 -15.01198 -14.61851 -14.09356 -13.91696 -13.77929 -13.50506 -13.28698 -13.17789 -13.08101 -12.85560 -12.56440 -12.38488 -12.30085 -12.27710 -11.99183 -11.92705 -11.46013 -10.90348 -10.68354 -10.57379 -10.52546 -10.09919 -9.80309 -9.37356 -7.88369 -6.15071 0.62378 1.23899 1.40189 1.44646 1.47350 1.53147 2.44110 2.63118 2.79052 3.14049 3.47535 3.70298 3.80299 3.88501 3.96214 4.07928 4.27310 4.33817 4.40934 4.59143 4.62587 4.71128 4.77417 4.79891 4.83876 4.87604 4.90276 5.00774 5.15317 5.19884 5.20660 5.37354 5.46804 5.57890 5.65707 5.95292 6.01566 6.05969 6.42451 6.55682 6.84567 7.11853 7.50092 7.68782 8.96238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.004859 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.098970 B = 5761.040216 C = 6364.412154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.351 5.351 5 C 0.127 3.873 6 C -0.308 4.308 7 C 0.581 3.419 8 O -0.611 6.611 9 N -0.674 5.674 10 C 0.177 3.823 11 C 0.008 3.992 12 C -0.504 4.504 13 H 0.059 0.941 14 C 0.037 3.963 15 N -0.887 5.887 16 Si 0.945 3.055 17 H -0.269 1.269 18 H -0.295 1.295 19 H -0.275 1.275 20 C -0.201 4.201 21 C -0.185 4.185 22 C 0.081 3.919 23 N -0.317 5.317 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.401 0.599 33 H 0.016 0.984 34 H 0.079 0.921 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 2.226 -13.481 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.131 5.131 5 C -0.025 4.025 6 C -0.323 4.323 7 C 0.369 3.631 8 O -0.496 6.496 9 N -0.319 5.319 10 C 0.053 3.947 11 C 0.008 3.992 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.165 4.165 15 N -0.524 5.524 16 Si 0.772 3.228 17 H -0.194 1.194 18 H -0.221 1.221 19 H -0.200 1.200 20 C -0.240 4.240 21 C -0.222 4.222 22 C -0.106 4.106 23 N -0.137 5.137 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.214 0.786 32 H 0.236 0.764 33 H 0.034 0.966 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.189 2.711 -14.380 17.831 hybrid contribution 1.383 -0.192 0.716 1.569 sum -8.806 2.519 -13.664 16.450 Atomic orbital electron populations 1.22230 0.92003 1.02939 1.04544 1.21800 0.96067 0.93637 0.84292 1.22259 1.01841 0.92716 1.05381 1.49087 1.48098 1.07000 1.08876 1.22987 0.95056 0.99763 0.84704 1.20375 1.20354 0.96190 0.95347 1.17574 0.77031 0.83010 0.85481 1.90635 1.58743 1.28797 1.71422 1.45285 1.59966 1.17141 1.09527 1.20717 0.94651 1.00118 0.79186 1.19269 0.95159 0.92188 0.92626 1.20656 1.03508 0.92529 1.37469 0.92309 1.25560 1.00180 0.94807 0.95923 1.70055 1.38636 0.99465 1.44226 0.85812 0.80931 0.76989 0.79059 1.19372 1.22088 1.20033 1.22963 1.01857 1.04470 0.94661 1.22945 0.96974 0.96254 1.06056 1.24301 0.96871 0.99394 0.90035 1.77050 1.22107 0.94119 1.20438 0.92066 0.87325 0.92872 0.87017 0.92490 0.86831 0.91174 0.78570 0.76439 0.96630 0.90268 0.93547 0.90517 0.90625 0.89686 0.89708 0.78057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.52 71.98 0.69 -1.39 16 2 C 0.14 2.32 3.91 44.99 0.18 2.50 16 3 C -0.16 -2.03 8.83 71.98 0.64 -1.40 16 4 N -0.35 -9.10 3.49 -325.75 -1.14 -10.24 16 5 C 0.13 3.81 10.40 84.27 0.88 4.69 16 6 C -0.31 -11.17 6.12 -20.15 -0.12 -11.29 16 7 C 0.58 25.98 7.81 86.66 0.68 26.66 16 8 O -0.61 -31.45 16.88 -4.03 -0.07 -31.52 16 9 N -0.67 -30.15 5.01 -466.39 -2.34 -32.48 16 10 C 0.18 8.67 4.62 86.38 0.40 9.07 16 11 C 0.01 0.39 2.04 -52.93 -0.11 0.28 16 12 C -0.50 -25.59 8.44 25.60 0.22 -25.37 16 13 H 0.06 2.94 7.82 -2.91 -0.02 2.91 16 14 C 0.04 1.93 5.31 84.65 0.45 2.38 16 15 N -0.89 -49.14 10.11 21.45 0.22 -48.92 16 16 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 21 C -0.19 -7.37 9.92 30.62 0.30 -7.07 16 22 C 0.08 2.60 11.50 85.65 0.99 3.58 16 23 N -0.32 -9.67 12.50 -56.27 -0.70 -10.37 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.89 7.13 -2.39 -0.02 0.87 16 31 H 0.20 5.10 7.24 -2.91 -0.02 5.08 16 32 H 0.40 16.74 7.13 -92.71 -0.66 16.08 16 33 H 0.02 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.08 4.53 5.89 -2.39 -0.01 4.51 16 35 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 36 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.20 5.61 7.55 -2.91 -0.02 5.58 16 Total: -1.00 -66.51 337.81 3.85 -62.66 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.38 Total: 32.47 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.48 Total: -5.69 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.96 Total: -102.02 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.07 Total: -31.52 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.51 3.85 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431164396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.829 kcal (2) G-P(sol) polarization free energy of solvation -66.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds