Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 H 1.09004 * 109.47169 * 54.99367 * 3 2 1 5 5 C 1.50694 * 109.47460 * 174.99782 * 3 2 1 6 6 H 1.07998 * 120.00298 * 120.00056 * 5 3 2 7 7 C 1.37879 * 120.00020 * 299.99708 * 5 3 2 8 8 N 1.31518 * 119.99897 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99984 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47160 * 120.00255 * 9 7 5 12 12 H 1.48502 * 109.46919 * 240.00119 * 9 7 5 13 13 N 1.46503 * 109.46922 * 294.99761 * 3 2 1 14 14 C 1.34778 * 120.00032 * 84.99424 * 13 3 2 15 15 O 1.21560 * 119.99703 * 0.02562 * 14 13 3 16 16 C 1.47838 * 120.00119 * 179.97438 * 14 13 3 17 17 C 1.39535 * 119.63934 * 180.02562 * 16 14 13 18 18 C 1.38220 * 119.15788 * 180.02562 * 17 16 14 19 19 C 1.39454 * 118.43060 * 0.27891 * 18 17 16 20 20 N 1.39063 * 120.39733 * 179.72446 * 19 18 17 21 21 C 1.46496 * 120.00533 * 359.97438 * 20 19 18 22 22 C 1.46504 * 119.99712 * 179.97438 * 20 19 18 23 23 C 1.39461 * 119.19127 * 359.43129 * 19 18 17 24 24 N 1.31321 * 120.78176 * 0.58320 * 23 19 18 25 25 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47206 * 300.00743 * 1 2 3 27 27 H 1.09003 * 109.46516 * 60.00636 * 1 2 3 28 28 H 1.09004 * 109.47630 * 239.99396 * 2 1 3 29 29 H 1.09009 * 109.46690 * 120.00051 * 2 1 3 30 30 H 0.96994 * 119.99848 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99955 * 265.00184 * 13 3 2 32 32 H 1.07998 * 120.41707 * 0.02562 * 17 16 14 33 33 H 1.08002 * 120.78090 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46970 * 59.99788 * 21 20 19 35 35 H 1.08998 * 109.47274 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.46691 * 299.99961 * 21 20 19 37 37 H 1.08992 * 109.47215 * 89.99755 * 22 20 19 38 38 H 1.08995 * 109.47228 * 210.00131 * 22 20 19 39 39 H 1.09006 * 109.47147 * 329.99797 * 22 20 19 40 40 H 1.08007 * 119.60927 * 180.27830 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0050 0.8799 1.3813 10 1 6.5989 1.5450 0.1938 11 1 6.4000 1.6156 2.6093 12 1 6.4961 -0.5192 1.4629 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3409 2.6325 -0.4321 16 6 0.0444 3.3257 -2.6302 17 6 -1.2175 3.9107 -2.7411 18 6 -1.5728 4.5259 -3.9267 19 6 -0.6514 4.5322 -4.9735 20 7 -0.9683 5.1346 -6.1862 21 6 -2.2767 5.7673 -6.3701 22 6 0.0065 5.1365 -7.2799 23 6 0.5938 3.9324 -4.7873 24 7 0.8985 3.3565 -3.6472 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.8291 -0.0611 2.9499 31 1 2.2721 2.1230 -1.9978 32 1 -1.9079 3.8830 -1.9110 33 1 -2.5429 4.9866 -4.0413 34 1 -2.3999 6.5663 -5.6390 35 1 -2.3415 6.1823 -7.3759 36 1 -3.0622 5.0241 -6.2321 37 1 -0.1341 4.2467 -7.8935 38 1 -0.1366 6.0266 -7.8925 39 1 1.0154 5.1377 -6.8674 40 1 1.3141 3.9373 -5.5921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444361599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = 5.932132 kcal Electronic energy + Delta-G solvation = -21278.540042 eV Core-core repulsion = 18093.471688 eV Total energy + Delta-G solvation = -3185.068354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41770 -38.61072 -36.79978 -34.92817 -32.52477 -32.00357 -31.06782 -30.12223 -28.69786 -27.01317 -25.56513 -23.25639 -23.04106 -22.00112 -20.32578 -19.19563 -18.01032 -17.17400 -16.66355 -15.80739 -15.51847 -15.18067 -14.83631 -14.53966 -14.36051 -14.08089 -13.52913 -13.32368 -13.21233 -13.00606 -12.65007 -12.57220 -12.33310 -11.98597 -11.83118 -11.39945 -11.16520 -10.87877 -10.76572 -10.43676 -10.23107 -10.07205 -9.64815 -9.53591 -9.49258 -8.93257 -8.91827 -8.40762 -7.74706 -7.49177 -6.03549 -4.11734 1.09019 1.38110 2.75599 3.30118 3.37559 3.39395 3.41907 4.15037 4.36869 4.43329 4.52706 4.62301 4.71505 4.78345 4.95881 5.08768 5.21524 5.26363 5.28562 5.30987 5.34650 5.55513 5.80768 5.90684 6.25074 6.47954 6.49027 6.56736 6.76471 6.82122 7.08729 7.16004 7.29812 7.47712 7.58360 7.73195 7.84016 7.98245 8.10098 8.27836 8.84729 8.89309 9.27965 9.55583 11.02008 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.003896 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.408690 B = 7184.355831 C = 7895.913236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.884 5.884 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.687 5.687 14 C 0.559 3.441 15 O -0.551 6.551 16 C 0.028 3.972 17 C -0.064 4.064 18 C -0.167 4.167 19 C 0.174 3.826 20 N -0.629 5.629 21 C 0.093 3.907 22 C 0.089 3.911 23 C 0.027 3.973 24 N -0.415 5.415 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.263 0.737 31 H 0.398 0.602 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 9.439 -18.403 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.334 5.334 14 C 0.342 3.658 15 O -0.431 6.431 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.198 4.198 19 C 0.068 3.932 20 N -0.340 5.340 21 C -0.050 4.050 22 C -0.054 4.054 23 C -0.139 4.139 24 N -0.126 5.126 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.922 8.976 -17.558 21.644 hybrid contribution 0.404 0.423 -0.509 0.776 sum -8.518 9.399 -18.068 22.076 Atomic orbital electron populations 1.21841 0.98398 0.97973 1.01253 1.21931 0.92611 0.99777 1.02281 1.18836 0.94274 0.89240 0.81052 0.93230 1.21303 0.90778 1.38561 1.06178 0.91935 1.24885 0.98546 0.94903 0.95417 1.69912 1.34931 1.37936 1.09366 0.86406 0.85024 0.77689 0.78064 1.19709 1.20966 1.20936 1.46364 1.14318 1.54128 1.18555 1.17691 0.83240 0.79280 0.85539 1.90738 1.51990 1.61102 1.39230 1.21318 0.92268 1.02981 0.94598 1.21901 0.96280 0.93023 0.97364 1.21008 1.00179 1.05651 0.92913 1.19049 0.94907 0.92874 0.86336 1.46167 1.16202 1.60440 1.11171 1.21662 0.84035 0.97312 1.02005 1.21750 0.92798 1.01672 0.89145 1.22375 0.94319 1.00864 0.96387 1.67447 1.33532 1.12430 0.99165 0.95908 0.93108 0.94283 0.94999 0.88260 0.92727 0.76828 0.83611 0.84778 0.92551 0.90683 0.92539 0.92968 0.91281 0.90896 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.24 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 7.08 2.24 -69.09 -0.15 6.93 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.59 8.73 -34.44 -0.30 -14.89 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.31 11.29 55.43 0.63 -24.69 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.69 -15.85 5.01 -55.88 -0.28 -16.13 16 14 C 0.56 12.33 6.37 -12.33 -0.08 12.25 16 15 O -0.55 -13.43 13.45 5.31 0.07 -13.36 16 16 C 0.03 0.52 6.74 -83.02 -0.56 -0.04 16 17 C -0.06 -0.98 9.62 -39.10 -0.38 -1.36 16 18 C -0.17 -2.03 9.39 -39.13 -0.37 -2.40 16 19 C 0.17 2.04 6.57 -83.67 -0.55 1.49 16 20 N -0.63 -5.38 3.39 -187.40 -0.64 -6.02 16 21 C 0.09 0.56 9.42 59.84 0.56 1.12 16 22 C 0.09 0.54 10.17 59.85 0.61 1.15 16 23 C 0.03 0.35 10.38 -17.31 -0.18 0.17 16 24 N -0.42 -6.98 9.52 -9.63 -0.09 -7.07 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 27 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.75 5.95 -51.92 -0.31 2.44 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.40 8.61 7.86 -40.82 -0.32 8.29 16 32 H 0.15 2.17 7.63 -52.49 -0.40 1.77 16 33 H 0.13 1.25 6.85 -52.49 -0.36 0.89 16 34 H 0.06 0.33 7.97 -51.93 -0.41 -0.09 16 35 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 36 H 0.06 0.33 7.97 -51.93 -0.41 -0.08 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.29 7.92 -51.93 -0.41 -0.13 16 39 H 0.07 0.44 6.19 -51.93 -0.32 0.11 16 40 H 0.16 1.61 6.14 -52.48 -0.32 1.29 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -32.16 326.21 -7.31 -39.48 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.58 Total: 6.87 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.32 Total: -0.17 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.38 Total: -53.90 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.16 -7.31 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444361599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.409 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds