Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 H 1.09004 * 109.47169 * 54.99367 * 3 2 1 5 5 C 1.50694 * 109.47460 * 174.99782 * 3 2 1 6 6 H 1.07998 * 120.00298 * 120.00056 * 5 3 2 7 7 C 1.37879 * 120.00020 * 299.99708 * 5 3 2 8 8 N 1.31518 * 119.99897 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99984 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47285 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47160 * 120.00255 * 9 7 5 12 12 H 1.48502 * 109.46919 * 240.00119 * 9 7 5 13 13 N 1.46503 * 109.46922 * 294.99761 * 3 2 1 14 14 C 1.34778 * 120.00032 * 84.99424 * 13 3 2 15 15 O 1.21560 * 119.99703 * 0.02562 * 14 13 3 16 16 C 1.47838 * 120.00119 * 179.97438 * 14 13 3 17 17 C 1.39535 * 119.63934 * 180.02562 * 16 14 13 18 18 C 1.38220 * 119.15788 * 180.02562 * 17 16 14 19 19 C 1.39454 * 118.43060 * 0.27891 * 18 17 16 20 20 N 1.39063 * 120.39733 * 179.72446 * 19 18 17 21 21 C 1.46496 * 120.00533 * 359.97438 * 20 19 18 22 22 C 1.46504 * 119.99712 * 179.97438 * 20 19 18 23 23 C 1.39461 * 119.19127 * 359.43129 * 19 18 17 24 24 N 1.31321 * 120.78176 * 0.58320 * 23 19 18 25 25 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47206 * 300.00743 * 1 2 3 27 27 H 1.09003 * 109.46516 * 60.00636 * 1 2 3 28 28 H 1.09004 * 109.47630 * 239.99396 * 2 1 3 29 29 H 1.09009 * 109.46690 * 120.00051 * 2 1 3 30 30 H 0.96994 * 119.99848 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99955 * 265.00184 * 13 3 2 32 32 H 1.07998 * 120.41707 * 0.02562 * 17 16 14 33 33 H 1.08002 * 120.78090 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46970 * 59.99788 * 21 20 19 35 35 H 1.08998 * 109.47274 * 179.97438 * 21 20 19 36 36 H 1.09005 * 109.46691 * 299.99961 * 21 20 19 37 37 H 1.08992 * 109.47215 * 89.99755 * 22 20 19 38 38 H 1.08995 * 109.47228 * 210.00131 * 22 20 19 39 39 H 1.09006 * 109.47147 * 329.99797 * 22 20 19 40 40 H 1.08007 * 119.60927 * 180.27830 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0050 0.8799 1.3813 10 1 6.5989 1.5450 0.1938 11 1 6.4000 1.6156 2.6093 12 1 6.4961 -0.5192 1.4629 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3671 15 8 -0.3409 2.6325 -0.4321 16 6 0.0444 3.3257 -2.6302 17 6 -1.2175 3.9107 -2.7411 18 6 -1.5728 4.5259 -3.9267 19 6 -0.6514 4.5322 -4.9735 20 7 -0.9683 5.1346 -6.1862 21 6 -2.2767 5.7673 -6.3701 22 6 0.0065 5.1365 -7.2799 23 6 0.5938 3.9324 -4.7873 24 7 0.8985 3.3565 -3.6472 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.8291 -0.0611 2.9499 31 1 2.2721 2.1230 -1.9978 32 1 -1.9079 3.8830 -1.9110 33 1 -2.5429 4.9866 -4.0413 34 1 -2.3999 6.5663 -5.6390 35 1 -2.3415 6.1823 -7.3759 36 1 -3.0622 5.0241 -6.2321 37 1 -0.1341 4.2467 -7.8935 38 1 -0.1366 6.0266 -7.8925 39 1 1.0154 5.1377 -6.8674 40 1 1.3141 3.9373 -5.5921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444361599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = -16.273757 kcal Electronic energy + Delta-G solvation = -21279.502961 eV Core-core repulsion = 18093.471688 eV Total energy + Delta-G solvation = -3186.031274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58181 -40.18052 -37.73669 -36.86759 -34.31174 -33.31143 -32.82004 -31.35603 -29.25527 -28.96113 -26.64984 -24.98406 -24.24828 -23.22272 -21.87529 -21.07145 -19.53476 -18.26853 -17.91070 -17.45078 -16.94818 -16.40286 -16.21443 -16.03177 -15.70657 -15.18890 -15.00675 -14.57838 -14.54011 -14.21570 -13.76991 -13.57046 -13.42655 -13.39244 -13.15973 -13.01962 -12.86495 -12.68764 -12.58801 -12.14430 -12.04903 -11.59760 -11.36439 -11.07009 -10.98573 -10.59859 -10.53654 -10.39748 -9.60669 -8.40328 -8.14761 -6.31898 -0.08601 0.34878 1.44709 1.45091 1.58180 1.97837 2.06296 2.38065 2.66878 3.02978 3.14262 3.42084 3.79746 3.82885 4.09327 4.16728 4.34650 4.48700 4.50150 4.54164 4.57787 4.74714 4.76719 4.79226 4.89634 4.91861 5.00240 5.05469 5.14817 5.27063 5.44539 5.45398 5.57190 5.64973 5.80947 5.94532 6.13919 6.17643 6.23240 6.75127 6.82762 7.12781 7.34111 7.58292 8.91079 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027326 B = 0.003896 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.408690 B = 7184.355831 C = 7895.913236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.691 5.691 14 C 0.556 3.444 15 O -0.586 6.586 16 C -0.016 4.016 17 C -0.063 4.063 18 C -0.167 4.167 19 C 0.193 3.807 20 N -0.619 5.619 21 C 0.082 3.918 22 C 0.078 3.922 23 C 0.020 3.980 24 N -0.435 5.435 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.404 0.596 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 10.700 -21.753 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.338 5.338 14 C 0.343 3.657 15 O -0.468 6.468 16 C -0.154 4.154 17 C -0.085 4.085 18 C -0.197 4.197 19 C 0.083 3.917 20 N -0.327 5.327 21 C -0.060 4.060 22 C -0.064 4.064 23 C -0.148 4.148 24 N -0.145 5.145 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.020 10.266 -20.967 25.027 hybrid contribution 0.320 0.179 0.284 0.463 sum -8.700 10.445 -20.684 24.751 Atomic orbital electron populations 1.21670 0.96899 0.99222 1.00223 1.21779 0.93881 0.98988 1.01233 1.18454 0.93819 0.89309 0.81127 0.98097 1.21586 0.91394 1.39024 1.06732 0.91582 1.25778 1.03515 0.94247 0.94861 1.70051 1.36999 1.38331 1.09833 0.85291 0.78895 0.77951 0.78154 1.18762 1.20726 1.20131 1.46159 1.15249 1.54823 1.17549 1.18298 0.82182 0.78395 0.86811 1.90692 1.52714 1.62339 1.41022 1.20665 0.94223 1.06744 0.93770 1.21889 0.95018 0.92990 0.98581 1.21227 1.01582 1.05223 0.91700 1.19145 0.93980 0.91169 0.87384 1.46585 1.17579 1.58276 1.10255 1.21952 0.82602 0.97534 1.03928 1.22031 0.92237 1.03477 0.88625 1.22843 0.95706 1.00403 0.95800 1.67292 1.33886 1.13408 0.99946 0.93330 0.95130 0.94278 0.94444 0.90577 0.92503 0.76105 0.84182 0.81611 0.91976 0.87970 0.92001 0.91957 0.88689 0.90796 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.33 16 2 C -0.12 -6.35 5.45 30.59 0.17 -6.18 16 3 C 0.28 15.39 2.24 44.24 0.10 15.49 16 4 H 0.00 0.07 7.58 -2.38 -0.02 0.06 16 5 C -0.55 -31.19 8.73 25.60 0.22 -30.97 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -53.97 11.29 21.45 0.24 -53.72 16 9 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.69 -33.46 5.01 -448.98 -2.25 -35.71 16 14 C 0.56 25.87 6.37 86.78 0.55 26.42 16 15 O -0.59 -30.38 13.45 -3.90 -0.05 -30.43 16 16 C -0.02 -0.60 6.74 41.85 0.28 -0.32 16 17 C -0.06 -1.93 9.62 22.58 0.22 -1.71 16 18 C -0.17 -3.71 9.39 22.56 0.21 -3.49 16 19 C 0.19 3.96 6.57 38.58 0.25 4.21 16 20 N -0.62 -7.97 3.39 -746.79 -2.53 -10.50 16 21 C 0.08 0.60 9.42 127.77 1.20 1.80 16 22 C 0.08 0.59 10.17 127.77 1.30 1.89 16 23 C 0.02 0.50 10.38 85.06 0.88 1.38 16 24 N -0.43 -14.55 9.52 -184.38 -1.76 -16.31 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.03 1.56 7.84 -2.39 -0.02 1.54 16 27 H 0.04 1.86 5.65 -2.39 -0.01 1.85 16 28 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.08 4.40 5.95 -2.38 -0.01 4.38 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.40 18.22 7.86 -92.71 -0.73 17.49 16 32 H 0.14 4.32 7.63 -2.91 -0.02 4.29 16 33 H 0.17 2.52 6.85 -2.91 -0.02 2.50 16 34 H 0.06 0.45 7.97 -2.39 -0.02 0.43 16 35 H 0.10 0.25 7.79 -2.39 -0.02 0.24 16 36 H 0.06 0.45 7.97 -2.38 -0.02 0.43 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.09 0.30 7.92 -2.39 -0.02 0.28 16 39 H 0.07 0.59 6.19 -2.38 -0.01 0.57 16 40 H 0.18 3.26 6.14 -2.91 -0.02 3.24 16 Total: -1.00 -73.43 326.21 2.46 -70.97 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.33 Total: 25.25 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.45 Total: 4.53 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -6.30 Total: -116.25 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.43 2.46 -70.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444361599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.697 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds