Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 N 1.46501 * 109.47164 * 179.97438 * 3 2 1 5 5 C 1.36912 * 120.00475 * 263.44266 * 4 3 2 6 6 H 1.07999 * 119.99911 * 137.55353 * 5 4 3 7 7 C 1.39021 * 119.99674 * 317.55631 * 5 4 3 8 8 N 1.31378 * 120.00545 * 347.28872 * 7 5 4 9 9 Si 1.86803 * 119.99657 * 167.28606 * 7 5 4 10 10 H 1.48504 * 109.47110 * 60.00142 * 9 7 5 11 11 H 1.48498 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47517 * 300.00195 * 9 7 5 13 13 C 1.34779 * 119.99849 * 83.44719 * 4 3 2 14 14 O 1.21609 * 119.99916 * 5.79491 * 13 4 3 15 15 C 1.47605 * 120.00096 * 185.80028 * 13 4 3 16 16 C 1.41686 * 126.50216 * 174.46058 * 15 13 4 17 17 C 1.34692 * 105.33541 * 179.70924 * 16 15 13 18 18 N 1.35520 * 107.72336 * 0.30120 * 17 16 15 19 19 N 1.28425 * 109.73083 * 359.93987 * 18 17 16 20 20 C 1.47005 * 123.90042 * 179.97438 * 18 17 16 21 21 C 1.53146 * 108.88404 * 342.33795 * 20 18 17 22 22 C 1.53150 * 109.60564 * 51.12106 * 21 20 18 23 23 C 1.50803 * 127.52892 * 180.31951 * 17 16 15 24 24 H 1.09001 * 109.46463 * 59.99593 * 1 2 3 25 25 H 1.08999 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46807 * 300.00155 * 1 2 3 27 27 H 1.09008 * 109.47132 * 240.00119 * 2 1 3 28 28 H 1.09005 * 109.46953 * 120.00460 * 2 1 3 29 29 H 1.09004 * 109.47114 * 60.00439 * 3 2 1 30 30 H 1.09005 * 109.47466 * 300.00146 * 3 2 1 31 31 H 0.96997 * 120.00110 * 179.97438 * 8 7 5 32 32 H 1.07998 * 127.33296 * 359.96576 * 16 15 13 33 33 H 1.09002 * 109.56681 * 222.51380 * 20 18 17 34 34 H 1.09003 * 109.66282 * 102.21333 * 20 18 17 35 35 H 1.09000 * 109.44431 * 291.08272 * 21 20 18 36 36 H 1.09001 * 109.44628 * 171.16700 * 21 20 18 37 37 H 1.08996 * 109.54182 * 170.53143 * 22 21 20 38 38 H 1.09000 * 109.53631 * 50.27487 * 22 21 20 39 39 H 1.08995 * 109.71459 * 284.12897 * 23 17 16 40 40 H 1.09000 * 109.71402 * 44.77720 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5779 1.1788 6 1 5.0569 0.9648 1.3730 7 6 3.7670 2.5048 2.1250 8 7 2.8789 3.4169 1.8006 9 14 4.4625 2.4532 3.8580 10 1 5.9350 2.6387 3.8061 11 1 3.8554 3.5400 4.6676 12 1 4.1506 1.1402 4.4777 13 6 4.1794 1.3090 -1.1587 14 8 3.5764 1.2946 -2.2147 15 6 5.6498 1.1802 -1.1466 16 6 6.4827 0.9249 -2.2640 17 6 7.7373 0.8995 -1.7747 18 7 7.6640 1.1194 -0.4395 19 7 6.4375 1.2778 -0.0929 20 6 8.8338 1.1645 0.4496 21 6 10.0207 0.5054 -0.2592 22 6 10.1895 1.1151 -1.6539 23 6 9.0171 0.6714 -2.5392 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 2.5841 4.0633 2.4609 32 1 6.1770 0.7851 -3.2904 33 1 8.6132 0.6251 1.3707 34 1 9.0776 2.2010 0.6827 35 1 9.8395 -0.5655 -0.3508 36 1 10.9280 0.6712 0.3217 37 1 11.1268 0.7712 -2.0912 38 1 10.1986 2.2024 -1.5777 39 1 9.1172 -0.3866 -2.7813 40 1 9.0071 1.2599 -3.4566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449798733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = 39.212974 kcal Electronic energy + Delta-G solvation = -22145.941486 eV Core-core repulsion = 18962.316298 eV Total energy + Delta-G solvation = -3183.625188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01970 -38.25361 -36.34292 -34.91397 -32.75187 -32.59224 -31.16499 -29.67745 -28.20031 -25.94305 -24.77080 -23.88286 -22.30245 -21.60493 -20.38729 -19.37836 -18.52180 -16.94326 -16.25116 -15.84026 -15.20636 -14.69053 -14.37896 -14.28729 -14.00887 -13.98001 -13.77622 -13.36402 -13.01112 -12.89145 -12.39070 -12.25283 -11.64601 -11.43853 -11.30400 -11.20893 -11.15484 -11.08371 -10.95189 -10.86836 -10.65462 -10.36978 -10.23894 -9.66356 -9.49528 -8.91897 -8.49918 -8.25700 -8.21892 -7.27429 -6.19863 -3.90226 2.55674 2.90735 3.04215 3.25561 3.27129 3.29685 4.21820 4.44970 4.56987 4.65840 4.68921 4.75250 5.01913 5.19399 5.25210 5.36417 5.43536 5.55452 5.65010 5.71005 5.77445 5.86334 5.89775 5.93420 6.05244 6.10297 6.29741 6.47915 6.56065 6.60876 6.65509 6.77406 6.90740 7.15148 7.29033 7.44116 7.51487 7.76828 8.14462 8.65274 8.83527 9.25631 9.66829 10.07625 10.83751 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.006566 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.893082 B = 4263.172438 C = 5535.339124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.423 5.423 5 C -0.313 4.313 6 H 0.108 0.892 7 C 0.040 3.960 8 N -0.872 5.872 9 Si 0.918 3.082 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.545 3.455 14 O -0.602 6.602 15 C 0.020 3.980 16 C -0.190 4.190 17 C -0.010 4.010 18 N -0.303 5.303 19 N -0.224 5.224 20 C 0.125 3.875 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.046 4.046 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 -5.244 -1.939 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.140 5.140 5 C -0.443 4.443 6 H 0.126 0.874 7 C -0.165 4.165 8 N -0.510 5.510 9 Si 0.745 3.255 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.333 3.667 14 O -0.487 6.487 15 C -0.141 4.141 16 C -0.219 4.219 17 C -0.133 4.133 18 N -0.093 5.093 19 N -0.056 5.056 20 C 0.004 3.996 21 C -0.172 4.172 22 C -0.163 4.163 23 C -0.085 4.085 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.713 -4.882 -1.074 12.735 hybrid contribution 0.362 0.048 0.208 0.420 sum 12.074 -4.834 -0.866 13.035 Atomic orbital electron populations 1.21646 0.96515 1.00372 1.01434 1.21871 0.94782 0.99502 1.01303 1.21417 0.81178 0.94228 1.03535 1.43337 1.04750 1.60643 1.05227 1.19863 1.12220 1.19318 0.92863 0.87435 1.25451 0.96787 0.94024 1.00221 1.69873 1.31230 1.15226 1.34659 0.86154 0.79291 0.77707 0.82365 1.19861 1.21174 1.20002 1.17265 0.83697 0.81591 0.84192 1.90603 1.68594 1.58185 1.31299 1.22147 0.95228 1.07198 0.89489 1.21227 0.90544 1.10034 1.00075 1.21092 0.96795 1.09601 0.85827 1.46038 1.05807 1.51609 1.05802 1.74289 0.88133 1.17518 1.25684 1.21904 0.81890 1.02821 0.92940 1.21899 0.97292 1.01056 0.96949 1.21670 0.98433 1.01279 0.94882 1.20228 0.88908 1.02044 0.97315 0.93093 0.93680 0.92971 0.92898 0.92379 0.87771 0.92834 0.92294 0.83170 0.88692 0.89660 0.90668 0.89384 0.90692 0.91255 0.90246 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.14 -2.93 6.21 -26.73 -0.17 -3.09 16 3 C 0.12 3.03 4.87 -4.04 -0.02 3.01 16 4 N -0.42 -11.56 2.50 -115.96 -0.29 -11.85 16 5 C -0.31 -8.53 8.00 -14.99 -0.12 -8.65 16 6 H 0.11 2.91 5.83 -52.49 -0.31 2.61 16 7 C 0.04 1.06 5.07 -17.46 -0.09 0.97 16 8 N -0.87 -24.29 11.39 55.50 0.63 -23.66 16 9 Si 0.92 20.67 29.57 -169.99 -5.03 15.64 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.54 14.96 7.58 -12.44 -0.09 14.87 16 14 O -0.60 -17.33 16.59 5.27 0.09 -17.25 16 15 C 0.02 0.50 6.87 -82.69 -0.57 -0.07 16 16 C -0.19 -3.90 10.76 -39.52 -0.43 -4.33 16 17 C -0.01 -0.17 6.57 -82.17 -0.54 -0.71 16 18 N -0.30 -5.53 3.74 -56.70 -0.21 -5.75 16 19 N -0.22 -5.16 8.79 33.45 0.29 -4.87 16 20 C 0.13 1.62 7.17 -3.69 -0.03 1.59 16 21 C -0.13 -1.21 5.91 -26.58 -0.16 -1.37 16 22 C -0.12 -1.13 5.98 -26.41 -0.16 -1.29 16 23 C -0.05 -0.53 6.28 -27.59 -0.17 -0.70 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.10 2.75 5.67 -51.93 -0.29 2.46 16 30 H 0.05 1.40 7.55 -51.93 -0.39 1.01 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -33.31 326.29 -7.81 -41.12 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.04 Total: 3.57 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.17 Total: -1.89 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.42 Total: -46.12 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.09 Total: -17.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.31 -7.81 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449798733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.338 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds