Wall clock time and date at job start Mon Mar 30 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47354 * 2 1 4 4 N 1.46501 * 109.47164 * 179.97438 * 3 2 1 5 5 C 1.36912 * 120.00475 * 263.44266 * 4 3 2 6 6 H 1.07999 * 119.99911 * 137.55353 * 5 4 3 7 7 C 1.39021 * 119.99674 * 317.55631 * 5 4 3 8 8 N 1.31378 * 120.00545 * 347.28872 * 7 5 4 9 9 Si 1.86803 * 119.99657 * 167.28606 * 7 5 4 10 10 H 1.48504 * 109.47110 * 60.00142 * 9 7 5 11 11 H 1.48498 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47517 * 300.00195 * 9 7 5 13 13 C 1.34779 * 119.99849 * 83.44719 * 4 3 2 14 14 O 1.21609 * 119.99916 * 5.79491 * 13 4 3 15 15 C 1.47605 * 120.00096 * 185.80028 * 13 4 3 16 16 C 1.41686 * 126.50216 * 174.46058 * 15 13 4 17 17 C 1.34692 * 105.33541 * 179.70924 * 16 15 13 18 18 N 1.35520 * 107.72336 * 0.30120 * 17 16 15 19 19 N 1.28425 * 109.73083 * 359.93987 * 18 17 16 20 20 C 1.47005 * 123.90042 * 179.97438 * 18 17 16 21 21 C 1.53146 * 108.88404 * 342.33795 * 20 18 17 22 22 C 1.53150 * 109.60564 * 51.12106 * 21 20 18 23 23 C 1.50803 * 127.52892 * 180.31951 * 17 16 15 24 24 H 1.09001 * 109.46463 * 59.99593 * 1 2 3 25 25 H 1.08999 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46807 * 300.00155 * 1 2 3 27 27 H 1.09008 * 109.47132 * 240.00119 * 2 1 3 28 28 H 1.09005 * 109.46953 * 120.00460 * 2 1 3 29 29 H 1.09004 * 109.47114 * 60.00439 * 3 2 1 30 30 H 1.09005 * 109.47466 * 300.00146 * 3 2 1 31 31 H 0.96997 * 120.00110 * 179.97438 * 8 7 5 32 32 H 1.07998 * 127.33296 * 359.96576 * 16 15 13 33 33 H 1.09002 * 109.56681 * 222.51380 * 20 18 17 34 34 H 1.09003 * 109.66282 * 102.21333 * 20 18 17 35 35 H 1.09000 * 109.44431 * 291.08272 * 21 20 18 36 36 H 1.09001 * 109.44628 * 171.16700 * 21 20 18 37 37 H 1.08996 * 109.54182 * 170.53143 * 22 21 20 38 38 H 1.09000 * 109.53631 * 50.27487 * 22 21 20 39 39 H 1.08995 * 109.71459 * 284.12897 * 23 17 16 40 40 H 1.09000 * 109.71402 * 44.77720 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5779 1.1788 6 1 5.0569 0.9648 1.3730 7 6 3.7670 2.5048 2.1250 8 7 2.8789 3.4169 1.8006 9 14 4.4625 2.4532 3.8580 10 1 5.9350 2.6387 3.8061 11 1 3.8554 3.5400 4.6676 12 1 4.1506 1.1402 4.4777 13 6 4.1794 1.3090 -1.1587 14 8 3.5764 1.2946 -2.2147 15 6 5.6498 1.1802 -1.1466 16 6 6.4827 0.9249 -2.2640 17 6 7.7373 0.8995 -1.7747 18 7 7.6640 1.1194 -0.4395 19 7 6.4375 1.2778 -0.0929 20 6 8.8338 1.1645 0.4496 21 6 10.0207 0.5054 -0.2592 22 6 10.1895 1.1151 -1.6539 23 6 9.0171 0.6714 -2.5392 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 2.5841 4.0633 2.4609 32 1 6.1770 0.7851 -3.2904 33 1 8.6132 0.6251 1.3707 34 1 9.0776 2.2010 0.6827 35 1 9.8395 -0.5655 -0.3508 36 1 10.9280 0.6712 0.3217 37 1 11.1268 0.7712 -2.0912 38 1 10.1986 2.2024 -1.5777 39 1 9.1172 -0.3866 -2.7813 40 1 9.0071 1.2599 -3.4566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449798733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:04 Heat of formation + Delta-G solvation = 18.504593 kcal Electronic energy + Delta-G solvation = -22146.839469 eV Core-core repulsion = 18962.316298 eV Total energy + Delta-G solvation = -3184.523171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.52632 -40.27161 -37.38747 -36.96709 -34.57135 -33.86344 -33.17190 -31.07584 -29.45895 -27.72824 -26.71587 -25.09245 -23.80659 -22.86709 -22.16502 -21.07175 -20.08535 -18.71008 -17.73689 -17.31748 -16.87093 -16.60219 -16.21020 -15.66735 -15.46841 -15.21634 -14.97415 -14.75616 -14.66719 -14.41596 -14.02785 -13.60284 -13.30308 -13.19027 -12.98478 -12.74862 -12.62659 -12.50325 -12.16083 -12.05111 -11.96404 -11.83639 -11.80315 -11.54767 -11.22087 -10.96164 -10.56963 -9.85686 -9.71869 -9.34934 -8.24753 -6.02901 0.88420 1.29702 1.41943 1.47888 1.53474 1.76277 2.32437 2.67122 2.96383 3.15466 3.51297 3.71912 3.84101 3.93731 4.09998 4.17500 4.29427 4.35824 4.47427 4.48643 4.62456 4.65679 4.76675 4.82758 4.89894 4.91477 4.94349 5.04287 5.07808 5.13247 5.20892 5.22156 5.33893 5.34718 5.48141 5.53132 5.69922 6.07502 6.13623 6.57251 7.07930 7.27809 7.60817 7.99638 8.79600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.006566 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.893082 B = 4263.172438 C = 5535.339124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.121 3.879 4 N -0.435 5.435 5 C -0.327 4.327 6 H 0.107 0.893 7 C -0.004 4.004 8 N -0.906 5.906 9 Si 0.986 3.014 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.633 6.633 15 C -0.023 4.023 16 C -0.220 4.220 17 C 0.017 3.983 18 N -0.296 5.296 19 N -0.254 5.254 20 C 0.106 3.894 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.047 4.047 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.270 0.730 32 H 0.154 0.846 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.153 -6.228 -1.014 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C -0.002 4.002 4 N -0.151 5.151 5 C -0.456 4.456 6 H 0.124 0.876 7 C -0.205 4.205 8 N -0.544 5.544 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.317 3.683 14 O -0.521 6.521 15 C -0.183 4.183 16 C -0.248 4.248 17 C -0.107 4.107 18 N -0.086 5.086 19 N -0.088 5.088 20 C -0.012 4.012 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.172 0.828 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.823 -5.874 -0.134 15.945 hybrid contribution -0.491 0.371 -0.122 0.627 sum 14.332 -5.502 -0.256 15.354 Atomic orbital electron populations 1.21597 0.93095 1.02508 1.01901 1.21754 0.97693 0.96508 1.00407 1.21418 0.80818 0.96373 1.01638 1.43616 1.05451 1.60524 1.05496 1.20056 1.12639 1.19898 0.93004 0.87578 1.26341 0.96935 0.93198 1.04054 1.69999 1.32462 1.15932 1.36044 0.85108 0.78783 0.78128 0.77035 1.19052 1.20655 1.18869 1.17846 0.85424 0.81212 0.83862 1.90534 1.69781 1.59663 1.32100 1.21942 0.94178 1.10421 0.91721 1.21417 0.91659 1.12090 0.99674 1.21835 0.97854 1.05616 0.85414 1.46556 1.05518 1.49274 1.07245 1.74085 0.90161 1.18619 1.25971 1.22514 0.81390 1.04201 0.93109 1.21959 0.96502 1.00617 0.97157 1.21716 0.98695 1.01128 0.94317 1.20537 0.86652 1.03845 0.97549 0.92857 0.90658 0.92299 0.94309 0.92570 0.88981 0.95071 0.92084 0.82849 0.88397 0.88707 0.90404 0.85673 0.86993 0.91647 0.88040 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.91 71.98 0.71 -3.91 16 2 C -0.12 -5.57 6.21 30.59 0.19 -5.38 16 3 C 0.12 6.45 4.87 86.38 0.42 6.87 16 4 N -0.43 -25.06 2.50 -639.05 -1.60 -26.66 16 5 C -0.33 -18.46 8.00 84.09 0.67 -17.78 16 6 H 0.11 5.93 5.83 -2.91 -0.02 5.92 16 7 C 0.00 -0.23 5.07 84.95 0.43 0.20 16 8 N -0.91 -51.94 11.39 21.68 0.25 -51.69 16 9 Si 0.99 42.51 29.57 68.60 2.03 44.53 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 13 C 0.53 30.78 7.58 86.72 0.66 31.43 16 14 O -0.63 -38.91 16.59 -4.06 -0.07 -38.98 16 15 C -0.02 -1.21 6.87 42.46 0.29 -0.91 16 16 C -0.22 -9.25 10.76 22.31 0.24 -9.01 16 17 C 0.02 0.56 6.57 41.21 0.27 0.83 16 18 N -0.30 -10.54 3.74 -333.30 -1.25 -11.79 16 19 N -0.25 -11.98 8.79 -48.08 -0.42 -12.40 16 20 C 0.11 2.48 7.17 86.33 0.62 3.10 16 21 C -0.12 -1.68 5.91 30.69 0.18 -1.50 16 22 C -0.12 -1.58 5.98 30.80 0.18 -1.40 16 23 C -0.05 -0.91 6.28 30.04 0.19 -0.72 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.09 5.11 5.67 -2.38 -0.01 5.10 16 30 H 0.03 1.75 7.55 -2.38 -0.02 1.73 16 31 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.15 6.09 8.06 -2.91 -0.02 6.07 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.07 8.11 -2.39 -0.02 1.05 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.04 326.29 5.03 -73.01 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.03 Total: 22.15 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.06 Total: 1.82 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.02 Total: -102.54 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.07 Total: -38.98 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -78.04 5.03 -73.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449798733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.519 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds