Wall clock time and date at job start Mon Mar 30 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 H 1.08994 * 109.47105 * 55.00409 * 3 2 1 5 5 C 1.50706 * 109.47208 * 174.99993 * 3 2 1 6 6 H 1.08000 * 119.99823 * 120.00122 * 5 3 2 7 7 C 1.37875 * 120.00127 * 300.00630 * 5 3 2 8 8 N 1.31516 * 119.99794 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46979 * 119.99919 * 9 7 5 12 12 H 1.48495 * 109.46865 * 239.99651 * 9 7 5 13 13 N 1.46501 * 109.47481 * 295.00235 * 3 2 1 14 14 C 1.34775 * 119.99743 * 84.99428 * 13 3 2 15 15 O 1.21569 * 120.00033 * 0.02562 * 14 13 3 16 16 C 1.47716 * 119.99718 * 180.02562 * 14 13 3 17 17 C 1.41640 * 126.49577 * 180.02562 * 16 14 13 18 18 C 1.34699 * 105.33499 * 179.97438 * 17 16 14 19 19 N 1.35507 * 107.71211 * 0.02562 * 18 17 16 20 20 N 1.28417 * 109.71809 * 359.96393 * 19 18 17 21 21 C 1.47001 * 123.89920 * 179.97438 * 19 18 17 22 22 C 1.53131 * 108.89625 * 342.36683 * 21 19 18 23 23 C 1.53154 * 109.61200 * 51.08990 * 22 21 19 24 24 C 1.50796 * 127.53596 * 180.02562 * 18 17 16 25 25 H 1.08996 * 109.46883 * 299.99748 * 1 2 3 26 26 H 1.08995 * 109.46769 * 59.99886 * 1 2 3 27 27 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47133 * 240.00296 * 2 1 3 29 29 H 1.08998 * 109.47640 * 120.00334 * 2 1 3 30 30 H 0.96999 * 119.99680 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99965 * 265.00050 * 13 3 2 32 32 H 1.08000 * 127.33149 * 359.95764 * 17 16 14 33 33 H 1.08994 * 109.56864 * 102.17272 * 21 19 18 34 34 H 1.09007 * 109.56132 * 222.40972 * 21 19 18 35 35 H 1.08993 * 109.44246 * 291.04982 * 22 21 19 36 36 H 1.09004 * 109.44959 * 171.13561 * 22 21 19 37 37 H 1.09006 * 109.53987 * 170.54771 * 23 22 21 38 38 H 1.08997 * 109.54489 * 50.29075 * 23 22 21 39 39 H 1.09003 * 109.71900 * 44.74042 * 24 18 17 40 40 H 1.08992 * 109.71867 * 284.09307 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8800 1.3810 10 1 6.5989 1.5442 0.1930 11 1 6.4001 1.6155 2.6091 12 1 6.4963 -0.5190 1.4624 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3411 2.6325 -0.4318 16 6 0.0441 3.3244 -2.6292 17 6 -1.1922 3.9605 -2.8994 18 6 -1.0918 4.4114 -4.1647 19 7 0.1335 4.0663 -4.6293 20 7 0.7800 3.4335 -3.7179 21 6 0.6178 4.3850 -5.9802 22 6 -0.5803 4.7377 -6.8662 23 6 -1.4385 5.7992 -6.1716 24 6 -2.1298 5.1665 -4.9561 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8294 -0.0606 2.9501 31 1 2.2719 2.1232 -1.9978 32 1 -2.0360 4.0621 -2.2330 33 1 1.2990 5.2345 -5.9328 34 1 1.1390 3.5217 -6.3942 35 1 -1.1790 3.8436 -7.0395 36 1 -0.2242 5.1262 -7.8203 37 1 -2.1916 6.1710 -6.8664 38 1 -0.8047 6.6231 -5.8438 39 1 -2.5686 5.9480 -4.3358 40 1 -2.9084 4.4807 -5.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450621286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:52 Heat of formation + Delta-G solvation = 24.917646 kcal Electronic energy + Delta-G solvation = -21563.685533 eV Core-core repulsion = 18379.440452 eV Total energy + Delta-G solvation = -3184.245080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60571 -38.66192 -36.74699 -34.92159 -33.07498 -32.29392 -31.06016 -29.95662 -28.67055 -26.94938 -24.71302 -23.42453 -22.60016 -21.99504 -20.19722 -19.47148 -18.80185 -17.06808 -16.73123 -16.23443 -15.52632 -15.22233 -14.73279 -14.50534 -14.44779 -14.15850 -13.92461 -13.52408 -13.22222 -12.74781 -12.59414 -12.22370 -11.82243 -11.50814 -11.42589 -11.39491 -11.32216 -11.17155 -10.89646 -10.77139 -10.52366 -10.24269 -10.07748 -9.54825 -9.10418 -8.94161 -8.81402 -8.76930 -8.42238 -7.68691 -6.04911 -4.13294 1.95512 2.40495 2.50284 3.28935 3.36474 3.40145 4.07979 4.15102 4.18157 4.29425 4.34997 4.42236 4.61514 4.89238 4.95903 5.02854 5.23230 5.26397 5.27577 5.36086 5.47341 5.54292 5.76447 5.77654 5.92273 6.10307 6.48876 6.56805 6.65986 6.76639 6.91208 7.15577 7.29743 7.46810 7.55843 7.71848 7.83390 7.98723 8.18226 8.26406 8.81545 8.88196 9.25157 9.53900 11.00657 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.004065 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.625178 B = 6886.578816 C = 7549.529864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.587 3.413 15 O -0.543 6.543 16 C -0.001 4.001 17 C -0.179 4.179 18 C 0.003 3.997 19 N -0.289 5.289 20 N -0.263 5.263 21 C 0.123 3.877 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.049 4.049 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.263 0.737 31 H 0.394 0.606 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 9.232 -18.749 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.370 3.630 15 O -0.420 6.420 16 C -0.163 4.163 17 C -0.207 4.207 18 C -0.120 4.120 19 N -0.079 5.079 20 N -0.097 5.097 21 C 0.003 3.997 22 C -0.174 4.174 23 C -0.164 4.164 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.176 8.832 -18.427 22.009 hybrid contribution 0.622 0.133 0.034 0.637 sum -7.554 8.965 -18.392 21.811 Atomic orbital electron populations 1.21847 0.98339 0.98026 1.01327 1.21934 0.92662 0.99739 1.02272 1.18840 0.94280 0.89244 0.80918 0.93134 1.21292 0.90742 1.38665 1.06224 0.92002 1.24879 0.98546 0.94877 0.95393 1.69911 1.34941 1.37870 1.09334 0.86405 0.85004 0.77703 0.78065 1.19761 1.20918 1.20917 1.46391 1.14185 1.54789 1.18633 1.16892 0.83003 0.78735 0.84419 1.90749 1.51955 1.60620 1.38658 1.22463 0.93916 1.05471 0.94426 1.21319 0.99577 1.04470 0.95377 1.21194 0.89589 1.05608 0.95643 1.45666 1.10590 1.39936 1.11664 1.73466 1.24068 1.14124 0.98082 1.22051 0.97641 1.02872 0.77177 1.21920 0.96255 1.00560 0.98627 1.21696 0.99613 0.97974 0.97150 1.20307 0.94703 0.98570 0.95221 0.93067 0.94232 0.95869 0.95030 0.88227 0.92692 0.77304 0.82321 0.89214 0.88315 0.90446 0.88937 0.90264 0.91098 0.89239 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.51 37.16 0.32 -2.94 16 2 C -0.13 -3.25 5.45 -26.73 -0.15 -3.39 16 3 C 0.27 7.14 2.24 -69.08 -0.15 6.99 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.64 8.73 -34.44 -0.30 -14.94 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.29 11.29 55.43 0.63 -24.67 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.69 -16.13 5.02 -55.92 -0.28 -16.41 16 14 C 0.59 13.31 6.39 -12.39 -0.08 13.23 16 15 O -0.54 -13.64 14.06 5.31 0.07 -13.57 16 16 C 0.00 -0.03 7.13 -82.68 -0.59 -0.62 16 17 C -0.18 -2.91 10.75 -39.54 -0.43 -3.33 16 18 C 0.00 0.04 6.57 -82.18 -0.54 -0.50 16 19 N -0.29 -3.91 3.74 -56.71 -0.21 -4.12 16 20 N -0.26 -4.57 11.72 33.46 0.39 -4.18 16 21 C 0.12 1.04 7.17 -3.70 -0.03 1.02 16 22 C -0.14 -0.76 5.91 -26.58 -0.16 -0.92 16 23 C -0.13 -0.73 5.98 -26.40 -0.16 -0.89 16 24 C -0.05 -0.40 6.28 -27.59 -0.17 -0.57 16 25 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 26 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.39 8.55 8.26 -40.82 -0.34 8.21 16 32 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.86 15.07 4.88 4.88 Total: -1.00 -32.90 323.86 -8.00 -40.90 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.93 Total: 6.14 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.53 Total: -5.14 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.53 Total: -49.37 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.90 -8.00 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450621286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.816 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds