Wall clock time and date at job start Mon Mar 30 2020 02:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 H 1.08994 * 109.47105 * 55.00409 * 3 2 1 5 5 C 1.50706 * 109.47208 * 174.99993 * 3 2 1 6 6 H 1.08000 * 119.99823 * 120.00122 * 5 3 2 7 7 C 1.37875 * 120.00127 * 300.00630 * 5 3 2 8 8 N 1.31516 * 119.99794 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99865 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46979 * 119.99919 * 9 7 5 12 12 H 1.48495 * 109.46865 * 239.99651 * 9 7 5 13 13 N 1.46501 * 109.47481 * 295.00235 * 3 2 1 14 14 C 1.34775 * 119.99743 * 84.99428 * 13 3 2 15 15 O 1.21569 * 120.00033 * 0.02562 * 14 13 3 16 16 C 1.47716 * 119.99718 * 180.02562 * 14 13 3 17 17 C 1.41640 * 126.49577 * 180.02562 * 16 14 13 18 18 C 1.34699 * 105.33499 * 179.97438 * 17 16 14 19 19 N 1.35507 * 107.71211 * 0.02562 * 18 17 16 20 20 N 1.28417 * 109.71809 * 359.96393 * 19 18 17 21 21 C 1.47001 * 123.89920 * 179.97438 * 19 18 17 22 22 C 1.53131 * 108.89625 * 342.36683 * 21 19 18 23 23 C 1.53154 * 109.61200 * 51.08990 * 22 21 19 24 24 C 1.50796 * 127.53596 * 180.02562 * 18 17 16 25 25 H 1.08996 * 109.46883 * 299.99748 * 1 2 3 26 26 H 1.08995 * 109.46769 * 59.99886 * 1 2 3 27 27 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47133 * 240.00296 * 2 1 3 29 29 H 1.08998 * 109.47640 * 120.00334 * 2 1 3 30 30 H 0.96999 * 119.99680 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99965 * 265.00050 * 13 3 2 32 32 H 1.08000 * 127.33149 * 359.95764 * 17 16 14 33 33 H 1.08994 * 109.56864 * 102.17272 * 21 19 18 34 34 H 1.09007 * 109.56132 * 222.40972 * 21 19 18 35 35 H 1.08993 * 109.44246 * 291.04982 * 22 21 19 36 36 H 1.09004 * 109.44959 * 171.13561 * 22 21 19 37 37 H 1.09006 * 109.53987 * 170.54771 * 23 22 21 38 38 H 1.08997 * 109.54489 * 50.29075 * 23 22 21 39 39 H 1.09003 * 109.71900 * 44.74042 * 24 18 17 40 40 H 1.08992 * 109.71867 * 284.09307 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8800 1.3810 10 1 6.5989 1.5442 0.1930 11 1 6.4001 1.6155 2.6091 12 1 6.4963 -0.5190 1.4624 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3668 15 8 -0.3411 2.6325 -0.4318 16 6 0.0441 3.3244 -2.6292 17 6 -1.1922 3.9605 -2.8994 18 6 -1.0918 4.4114 -4.1647 19 7 0.1335 4.0663 -4.6293 20 7 0.7800 3.4335 -3.7179 21 6 0.6178 4.3850 -5.9802 22 6 -0.5803 4.7377 -6.8662 23 6 -1.4385 5.7992 -6.1716 24 6 -2.1298 5.1665 -4.9561 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8294 -0.0606 2.9501 31 1 2.2719 2.1232 -1.9978 32 1 -2.0360 4.0621 -2.2330 33 1 1.2990 5.2345 -5.9328 34 1 1.1390 3.5217 -6.3942 35 1 -1.1790 3.8436 -7.0395 36 1 -0.2242 5.1262 -7.8203 37 1 -2.1916 6.1710 -6.8664 38 1 -0.8047 6.6231 -5.8438 39 1 -2.5686 5.9480 -4.3358 40 1 -2.9084 4.4807 -5.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450621286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:51 Heat of formation + Delta-G solvation = 2.665892 kcal Electronic energy + Delta-G solvation = -21564.650441 eV Core-core repulsion = 18379.440452 eV Total energy + Delta-G solvation = -3185.209989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.75972 -40.48373 -37.50291 -36.91027 -34.32075 -34.02070 -32.92321 -31.18182 -29.59901 -28.95229 -25.86372 -24.91999 -24.11939 -22.96401 -21.80827 -21.17703 -20.14357 -18.69086 -17.84137 -17.46493 -17.17953 -17.06680 -16.16981 -16.08453 -15.39278 -15.04771 -14.93353 -14.80657 -14.62218 -14.53590 -13.92089 -13.64692 -13.49547 -13.18921 -12.91236 -12.81527 -12.69995 -12.20911 -12.15862 -12.07563 -11.93626 -11.84271 -11.61617 -11.58376 -11.06756 -10.96191 -10.54962 -10.07089 -9.89854 -9.62575 -8.17006 -6.34472 0.60954 1.16944 1.43490 1.43744 1.54518 1.57057 2.35275 2.51623 2.62277 3.11922 3.32444 3.62137 3.80586 3.83052 3.93447 4.32023 4.38251 4.43854 4.47852 4.54613 4.55504 4.70826 4.75305 4.77853 4.88895 5.02574 5.05027 5.06941 5.16124 5.23166 5.33186 5.37265 5.42410 5.52885 5.59469 5.77271 5.87647 5.95372 6.14230 6.71493 6.80076 7.06928 7.30339 7.49249 8.88991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.004065 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.625178 B = 6886.578816 C = 7549.529864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.693 5.693 14 C 0.586 3.414 15 O -0.577 6.577 16 C -0.039 4.039 17 C -0.206 4.206 18 C 0.025 3.975 19 N -0.279 5.279 20 N -0.279 5.279 21 C 0.105 3.895 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.051 4.051 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.266 0.734 31 H 0.401 0.599 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.712 10.336 -21.994 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.798 3.202 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.340 5.340 14 C 0.371 3.629 15 O -0.457 6.457 16 C -0.198 4.198 17 C -0.234 4.234 18 C -0.100 4.100 19 N -0.069 5.069 20 N -0.115 5.115 21 C -0.012 4.012 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.090 4.090 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.177 0.823 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.097 9.944 -21.709 25.214 hybrid contribution 0.548 -0.137 0.936 1.093 sum -7.549 9.808 -20.773 24.181 Atomic orbital electron populations 1.21680 0.96924 0.99321 1.00205 1.21785 0.93845 0.98890 1.01354 1.18489 0.93936 0.89349 0.80855 0.97910 1.21564 0.91252 1.39243 1.06849 0.91594 1.25769 1.03535 0.94172 0.94803 1.70048 1.37038 1.38204 1.09800 0.85284 0.78818 0.77990 0.78154 1.18846 1.20659 1.20072 1.46191 1.14906 1.55168 1.17772 1.17338 0.82121 0.77985 0.85462 1.90707 1.52723 1.61837 1.40385 1.21966 0.95902 1.08030 0.93898 1.21493 0.98890 1.05723 0.97287 1.21847 0.89978 1.03553 0.94645 1.46257 1.10522 1.37723 1.12383 1.73362 1.24688 1.15128 0.98356 1.22652 0.99716 1.03826 0.75036 1.21981 0.94881 1.00672 0.99091 1.21737 1.00200 0.97652 0.96502 1.20588 0.93726 0.98791 0.95847 0.95083 0.94414 0.93195 0.94364 0.90411 0.92426 0.76435 0.82261 0.87740 0.87599 0.90486 0.85613 0.87320 0.91252 0.88046 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.51 71.98 0.61 -5.42 16 2 C -0.12 -6.34 5.45 30.59 0.17 -6.17 16 3 C 0.28 15.41 2.24 44.25 0.10 15.51 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -31.19 8.73 25.60 0.22 -30.96 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.98 5.29 84.65 0.45 1.42 16 8 N -0.91 -53.68 11.29 21.45 0.24 -53.44 16 9 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 13 N -0.69 -33.74 5.02 -449.10 -2.25 -36.00 16 14 C 0.59 27.95 6.39 86.75 0.55 28.50 16 15 O -0.58 -30.80 14.06 -3.93 -0.06 -30.86 16 16 C -0.04 -1.55 7.13 42.49 0.30 -1.24 16 17 C -0.21 -6.74 10.75 22.30 0.24 -6.50 16 18 C 0.02 0.59 6.57 41.21 0.27 0.86 16 19 N -0.28 -7.09 3.74 -333.35 -1.25 -8.34 16 20 N -0.28 -9.68 11.72 -48.06 -0.56 -10.25 16 21 C 0.11 1.48 7.17 86.33 0.62 2.10 16 22 C -0.13 -0.87 5.91 30.69 0.18 -0.69 16 23 C -0.12 -0.87 5.98 30.81 0.18 -0.68 16 24 C -0.05 -0.65 6.28 30.04 0.19 -0.46 16 25 H 0.03 1.59 7.84 -2.39 -0.02 1.57 16 26 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.08 4.48 5.95 -2.39 -0.01 4.46 16 30 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.40 18.07 8.26 -92.71 -0.77 17.31 16 32 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 35 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -75.27 323.86 2.52 -72.75 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.28 Total: 24.11 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 4.09 Total: -3.72 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.82 Total: -108.02 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.06 Total: -30.86 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.27 2.52 -72.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450621286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.414 kcal (2) G-P(sol) polarization free energy of solvation -75.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds