Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46803 * 2 1 4 4 H 1.08994 * 109.47959 * 304.90205 * 3 2 1 5 5 C 1.50703 * 109.46993 * 184.90330 * 3 2 1 6 6 H 1.08004 * 119.99731 * 245.45371 * 5 3 2 7 7 C 1.37874 * 120.00185 * 65.45285 * 5 3 2 8 8 N 1.31514 * 119.99860 * 9.47201 * 7 5 3 9 9 Si 1.86801 * 120.00105 * 189.47014 * 7 5 3 10 10 H 1.48491 * 109.47156 * 84.99411 * 9 7 5 11 11 H 1.48502 * 109.46847 * 204.99918 * 9 7 5 12 12 H 1.48507 * 109.47115 * 324.99173 * 9 7 5 13 13 N 1.46502 * 109.46969 * 64.90651 * 3 2 1 14 14 C 1.34775 * 119.99746 * 274.99772 * 13 3 2 15 15 O 1.21569 * 120.00047 * 359.97438 * 14 13 3 16 16 C 1.47707 * 119.99870 * 180.02562 * 14 13 3 17 17 C 1.41648 * 126.49527 * 179.97438 * 16 14 13 18 18 C 1.34701 * 105.33332 * 180.02562 * 17 16 14 19 19 N 1.35509 * 107.71698 * 0.02705 * 18 17 16 20 20 N 1.28424 * 109.71385 * 359.96341 * 19 18 17 21 21 C 1.46997 * 123.90347 * 179.97438 * 19 18 17 22 22 C 1.53145 * 108.88834 * 342.34045 * 21 19 18 23 23 C 1.53153 * 109.60707 * 51.10938 * 22 21 19 24 24 C 1.50798 * 127.53434 * 180.02562 * 18 17 16 25 25 H 1.08996 * 109.46854 * 299.99603 * 1 2 3 26 26 H 1.08998 * 109.47149 * 59.99651 * 1 2 3 27 27 H 1.08998 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47305 * 240.00588 * 2 1 3 29 29 H 1.08998 * 109.47671 * 120.00288 * 2 1 3 30 30 H 0.96999 * 119.99730 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00535 * 94.99889 * 13 3 2 32 32 H 1.07995 * 127.33723 * 0.03783 * 17 16 14 33 33 H 1.08996 * 109.56607 * 102.16994 * 21 19 18 34 34 H 1.08999 * 109.56794 * 222.40693 * 21 19 18 35 35 H 1.09002 * 109.45445 * 291.06636 * 22 21 19 36 36 H 1.08999 * 109.44518 * 171.15097 * 22 21 19 37 37 H 1.08997 * 109.54162 * 170.53896 * 23 22 21 38 38 H 1.09000 * 109.54053 * 50.28000 * 23 22 21 39 39 H 1.09004 * 109.71543 * 44.77087 * 24 18 17 40 40 H 1.08997 * 109.72324 * 284.12008 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9812 -0.8427 5 6 3.5421 1.4443 -0.1214 6 1 4.1493 1.8092 0.6938 7 6 4.1412 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9919 0.7330 -1.3291 10 1 6.3290 -0.6064 -0.7837 11 1 6.4617 0.8279 -2.7346 12 1 6.6562 1.7812 -0.5133 13 7 1.6504 2.0982 1.2509 14 6 0.4329 2.6651 1.3638 15 8 -0.3418 2.6328 0.4275 16 6 0.0403 3.3266 2.6247 17 6 -1.1964 3.9630 2.8927 18 6 -1.0976 4.4154 4.1576 19 7 0.1276 4.0720 4.6238 20 7 0.7750 3.4374 3.7142 21 6 0.6108 4.3937 5.9743 22 6 -0.2621 5.5068 6.5611 23 6 -1.7394 5.1251 6.4288 24 6 -2.1370 5.1705 4.9471 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 3.8312 0.3856 -3.1431 31 1 2.2687 2.1243 1.9978 32 1 -2.0394 4.0638 2.2251 33 1 0.5461 3.5076 6.6058 34 1 1.6464 4.7293 5.9212 35 1 -0.0775 6.4356 6.0213 36 1 -0.0157 5.6443 7.6139 37 1 -2.3502 5.8309 6.9917 38 1 -1.8921 4.1182 6.8173 39 1 -3.1120 4.7013 4.8146 40 1 -2.1770 6.2054 4.6074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450621292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = 23.563596 kcal Electronic energy + Delta-G solvation = -21554.423009 eV Core-core repulsion = 18370.119213 eV Total energy + Delta-G solvation = -3184.303796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.60380 -38.66498 -36.74621 -34.90826 -33.07412 -32.27096 -31.14123 -29.97466 -28.66983 -26.95227 -24.71520 -23.42022 -22.60300 -22.00213 -20.22058 -19.51227 -18.80638 -17.05799 -16.72694 -16.26872 -15.45446 -15.22470 -14.80847 -14.47667 -14.45216 -14.08432 -14.00498 -13.52719 -13.21758 -12.74355 -12.58103 -12.29660 -11.80687 -11.50815 -11.43107 -11.37286 -11.34064 -11.24212 -10.95013 -10.71175 -10.52636 -10.27683 -10.11409 -9.61937 -9.07447 -9.01621 -8.81468 -8.76852 -8.39942 -7.70807 -6.07054 -4.11530 1.95475 2.40522 2.50324 3.30731 3.36902 3.39042 4.07905 4.14632 4.19230 4.28907 4.35103 4.43135 4.61326 4.88977 4.95933 5.02988 5.23354 5.25913 5.27666 5.36167 5.47446 5.54270 5.76454 5.77630 5.92177 6.10390 6.43731 6.49566 6.65176 6.70521 6.91213 7.09723 7.26039 7.41823 7.51859 7.71249 7.80766 7.92787 8.15035 8.18933 8.82462 8.89032 9.25206 9.54104 11.01325 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.004073 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.530477 B = 6873.065966 C = 7559.032961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.058 0.942 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.693 5.693 14 C 0.587 3.413 15 O -0.542 6.542 16 C -0.001 4.001 17 C -0.179 4.179 18 C 0.003 3.997 19 N -0.289 5.289 20 N -0.263 5.263 21 C 0.123 3.877 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.050 4.050 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.394 0.606 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 8.692 19.044 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.076 0.924 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.340 5.340 14 C 0.370 3.630 15 O -0.419 6.419 16 C -0.163 4.163 17 C -0.207 4.207 18 C -0.120 4.120 19 N -0.079 5.079 20 N -0.097 5.097 21 C 0.003 3.997 22 C -0.174 4.174 23 C -0.164 4.164 24 C -0.088 4.088 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.227 0.773 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.292 8.322 18.701 22.085 hybrid contribution 0.647 -0.014 0.000 0.647 sum -7.645 8.309 18.702 21.846 Atomic orbital electron populations 1.21851 0.98020 0.98158 1.01618 1.21850 0.93024 0.99816 1.01161 1.18843 0.94404 0.88958 0.81218 0.92439 1.21195 0.90601 1.43757 1.01783 0.92062 1.24874 0.98391 0.95221 0.94970 1.69990 1.35663 1.43959 1.02107 0.86535 0.85143 0.78694 0.77170 1.20453 1.21211 1.19934 1.46374 1.14196 1.54808 1.18604 1.16890 0.82996 0.78734 0.84421 1.90751 1.52064 1.60589 1.38515 1.22461 0.93967 1.05474 0.94368 1.21321 0.99638 1.04393 0.95384 1.21195 0.89512 1.05673 0.95649 1.45667 1.10485 1.39982 1.11729 1.73468 1.24010 1.14195 0.98070 1.22051 0.99971 0.99651 0.78060 1.21924 0.95196 0.98051 1.02208 1.21692 0.95643 1.02755 0.96329 1.20307 0.95893 0.99677 0.92932 0.93960 0.92877 0.95787 0.90183 0.94698 0.92621 0.77329 0.82315 0.89235 0.88302 0.90423 0.88940 0.90265 0.91120 0.89246 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 37.16 0.32 -2.91 16 2 C -0.12 -3.00 5.50 -26.73 -0.15 -3.15 16 3 C 0.27 7.08 2.11 -69.08 -0.15 6.94 16 4 H 0.06 1.75 7.52 -51.93 -0.39 1.36 16 5 C -0.53 -14.76 8.66 -34.44 -0.30 -15.06 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.07 1.91 5.16 -17.82 -0.09 1.82 16 8 N -0.88 -25.48 12.16 55.43 0.67 -24.80 16 9 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.69 -16.07 5.02 -55.92 -0.28 -16.35 16 14 C 0.59 13.29 6.39 -12.39 -0.08 13.21 16 15 O -0.54 -13.62 14.06 5.31 0.07 -13.54 16 16 C 0.00 -0.02 7.13 -82.68 -0.59 -0.61 16 17 C -0.18 -2.90 10.75 -39.53 -0.43 -3.33 16 18 C 0.00 0.04 6.57 -82.17 -0.54 -0.50 16 19 N -0.29 -3.90 3.74 -56.71 -0.21 -4.11 16 20 N -0.26 -4.56 11.72 33.46 0.39 -4.17 16 21 C 0.12 1.04 7.17 -3.70 -0.03 1.01 16 22 C -0.14 -0.76 5.91 -26.58 -0.16 -0.92 16 23 C -0.13 -0.73 5.98 -26.41 -0.16 -0.89 16 24 C -0.05 -0.40 6.28 -27.59 -0.17 -0.57 16 25 H 0.04 0.97 5.65 -51.93 -0.29 0.68 16 26 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 2.17 6.80 -51.93 -0.35 1.82 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.39 8.50 8.25 -40.82 -0.34 8.17 16 32 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -33.06 325.22 -7.96 -41.02 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.97 Total: 5.85 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.51 Total: -4.96 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.57 Total: -49.43 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.06 -7.96 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450621292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.581 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds