Wall clock time and date at job start Mon Mar 30 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46803 * 2 1 4 4 H 1.08994 * 109.47959 * 304.90205 * 3 2 1 5 5 C 1.50703 * 109.46993 * 184.90330 * 3 2 1 6 6 H 1.08004 * 119.99731 * 245.45371 * 5 3 2 7 7 C 1.37874 * 120.00185 * 65.45285 * 5 3 2 8 8 N 1.31514 * 119.99860 * 9.47201 * 7 5 3 9 9 Si 1.86801 * 120.00105 * 189.47014 * 7 5 3 10 10 H 1.48491 * 109.47156 * 84.99411 * 9 7 5 11 11 H 1.48502 * 109.46847 * 204.99918 * 9 7 5 12 12 H 1.48507 * 109.47115 * 324.99173 * 9 7 5 13 13 N 1.46502 * 109.46969 * 64.90651 * 3 2 1 14 14 C 1.34775 * 119.99746 * 274.99772 * 13 3 2 15 15 O 1.21569 * 120.00047 * 359.97438 * 14 13 3 16 16 C 1.47707 * 119.99870 * 180.02562 * 14 13 3 17 17 C 1.41648 * 126.49527 * 179.97438 * 16 14 13 18 18 C 1.34701 * 105.33332 * 180.02562 * 17 16 14 19 19 N 1.35509 * 107.71698 * 0.02705 * 18 17 16 20 20 N 1.28424 * 109.71385 * 359.96341 * 19 18 17 21 21 C 1.46997 * 123.90347 * 179.97438 * 19 18 17 22 22 C 1.53145 * 108.88834 * 342.34045 * 21 19 18 23 23 C 1.53153 * 109.60707 * 51.10938 * 22 21 19 24 24 C 1.50798 * 127.53434 * 180.02562 * 18 17 16 25 25 H 1.08996 * 109.46854 * 299.99603 * 1 2 3 26 26 H 1.08998 * 109.47149 * 59.99651 * 1 2 3 27 27 H 1.08998 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47305 * 240.00588 * 2 1 3 29 29 H 1.08998 * 109.47671 * 120.00288 * 2 1 3 30 30 H 0.96999 * 119.99730 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00535 * 94.99889 * 13 3 2 32 32 H 1.07995 * 127.33723 * 0.03783 * 17 16 14 33 33 H 1.08996 * 109.56607 * 102.16994 * 21 19 18 34 34 H 1.08999 * 109.56794 * 222.40693 * 21 19 18 35 35 H 1.09002 * 109.45445 * 291.06636 * 22 21 19 36 36 H 1.08999 * 109.44518 * 171.15097 * 22 21 19 37 37 H 1.08997 * 109.54162 * 170.53896 * 23 22 21 38 38 H 1.09000 * 109.54053 * 50.28000 * 23 22 21 39 39 H 1.09004 * 109.71543 * 44.77087 * 24 18 17 40 40 H 1.08997 * 109.72324 * 284.12008 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9812 -0.8427 5 6 3.5421 1.4443 -0.1214 6 1 4.1493 1.8092 0.6938 7 6 4.1412 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9919 0.7330 -1.3291 10 1 6.3290 -0.6064 -0.7837 11 1 6.4617 0.8279 -2.7346 12 1 6.6562 1.7812 -0.5133 13 7 1.6504 2.0982 1.2509 14 6 0.4329 2.6651 1.3638 15 8 -0.3418 2.6328 0.4275 16 6 0.0403 3.3266 2.6247 17 6 -1.1964 3.9630 2.8927 18 6 -1.0976 4.4154 4.1576 19 7 0.1276 4.0720 4.6238 20 7 0.7750 3.4374 3.7142 21 6 0.6108 4.3937 5.9743 22 6 -0.2621 5.5068 6.5611 23 6 -1.7394 5.1251 6.4288 24 6 -2.1370 5.1705 4.9471 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 3.8312 0.3856 -3.1431 31 1 2.2687 2.1243 1.9978 32 1 -2.0394 4.0638 2.2251 33 1 0.5461 3.5076 6.6058 34 1 1.6464 4.7293 5.9212 35 1 -0.0775 6.4356 6.0213 36 1 -0.0157 5.6443 7.6139 37 1 -2.3502 5.8309 6.9917 38 1 -1.8921 4.1182 6.8173 39 1 -3.1120 4.7013 4.8146 40 1 -2.1770 6.2054 4.6074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450621292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:57 Heat of formation + Delta-G solvation = 1.070568 kcal Electronic energy + Delta-G solvation = -21555.398380 eV Core-core repulsion = 18370.119213 eV Total energy + Delta-G solvation = -3185.279167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.75580 -40.48228 -37.49930 -36.88989 -34.30977 -34.01884 -32.99606 -31.18081 -29.59612 -28.95326 -25.86255 -24.91313 -24.12370 -22.96463 -21.84413 -21.18571 -20.14482 -18.67310 -17.84295 -17.51831 -17.16201 -17.00045 -16.19791 -16.09006 -15.36193 -15.09675 -14.97814 -14.73907 -14.62750 -14.51410 -13.95520 -13.65263 -13.46183 -13.28958 -12.93642 -12.81715 -12.62539 -12.23655 -12.18009 -12.09411 -11.93520 -11.84160 -11.65608 -11.58233 -11.12044 -10.93751 -10.54283 -10.07076 -9.89623 -9.63572 -8.20062 -6.33445 0.61169 1.17113 1.43274 1.45158 1.54095 1.55780 2.35549 2.51986 2.62167 3.10905 3.32544 3.62287 3.80807 3.83253 3.93543 4.32152 4.38522 4.44161 4.44823 4.51480 4.54795 4.69168 4.73218 4.77978 4.88953 5.02540 5.04242 5.07128 5.16419 5.20336 5.33298 5.37003 5.40375 5.48919 5.59416 5.72622 5.86819 5.95443 6.04719 6.72947 6.80223 7.07132 7.30504 7.49410 8.88938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.004073 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.530477 B = 6873.065966 C = 7559.032961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.554 4.554 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.693 5.693 14 C 0.586 3.414 15 O -0.577 6.577 16 C -0.039 4.039 17 C -0.206 4.206 18 C 0.025 3.975 19 N -0.279 5.279 20 N -0.279 5.279 21 C 0.106 3.894 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.051 4.051 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.266 0.734 31 H 0.401 0.599 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 9.623 22.440 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.592 4.592 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.340 5.340 14 C 0.371 3.629 15 O -0.456 6.456 16 C -0.198 4.198 17 C -0.234 4.234 18 C -0.100 4.100 19 N -0.069 5.069 20 N -0.115 5.115 21 C -0.012 4.012 22 C -0.167 4.167 23 C -0.160 4.160 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.236 0.764 32 H 0.177 0.823 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.180 9.262 22.138 25.353 hybrid contribution 0.561 -0.217 -0.944 1.119 sum -7.619 9.045 21.194 24.271 Atomic orbital electron populations 1.21686 0.96625 0.99540 1.00407 1.21699 0.94183 0.98747 1.00423 1.18492 0.93997 0.89238 0.81053 0.97470 1.21498 0.91187 1.44211 1.02290 0.91516 1.25770 1.03403 0.94573 0.94350 1.70130 1.37837 1.44501 1.02712 0.85397 0.78912 0.79026 0.77242 1.19389 1.20946 1.19093 1.46178 1.14905 1.55184 1.17752 1.17336 0.82128 0.77990 0.85451 1.90711 1.52853 1.61818 1.40257 1.21964 0.95935 1.08023 0.93861 1.21494 0.98952 1.05672 0.97285 1.21845 0.89916 1.03622 0.94640 1.46258 1.10427 1.37762 1.12443 1.73364 1.24615 1.15182 0.98338 1.22651 1.01172 1.01699 0.75688 1.21986 0.94473 0.96403 1.03816 1.21731 0.96050 1.03711 0.94551 1.20587 0.94699 0.99718 0.93967 0.94153 0.95072 0.92931 0.92427 0.93592 0.92451 0.76423 0.82277 0.87581 0.87697 0.90610 0.85598 0.87353 0.91135 0.87973 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.51 71.98 0.61 -5.38 16 2 C -0.11 -5.79 5.50 30.60 0.17 -5.62 16 3 C 0.28 15.28 2.11 44.25 0.09 15.37 16 4 H 0.01 0.48 7.52 -2.39 -0.02 0.46 16 5 C -0.55 -31.33 8.66 25.60 0.22 -31.11 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 1.11 5.16 84.65 0.44 1.55 16 8 N -0.91 -54.52 12.16 21.45 0.26 -54.26 16 9 Si 0.97 43.73 29.55 68.60 2.03 45.75 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.69 -33.60 5.02 -449.10 -2.25 -35.85 16 14 C 0.59 27.91 6.39 86.75 0.55 28.46 16 15 O -0.58 -30.82 14.06 -3.93 -0.06 -30.88 16 16 C -0.04 -1.54 7.13 42.48 0.30 -1.23 16 17 C -0.21 -6.74 10.75 22.30 0.24 -6.50 16 18 C 0.02 0.59 6.57 41.21 0.27 0.86 16 19 N -0.28 -7.07 3.74 -333.34 -1.25 -8.31 16 20 N -0.28 -9.64 11.72 -48.06 -0.56 -10.20 16 21 C 0.11 1.47 7.17 86.33 0.62 2.09 16 22 C -0.13 -0.88 5.91 30.69 0.18 -0.70 16 23 C -0.12 -0.85 5.98 30.80 0.18 -0.67 16 24 C -0.05 -0.65 6.28 30.04 0.19 -0.46 16 25 H 0.04 1.92 5.65 -2.39 -0.01 1.90 16 26 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 3.24 6.80 -2.39 -0.02 3.22 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.40 17.94 8.25 -92.71 -0.76 17.18 16 32 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 0.60 8.11 -2.39 -0.02 0.58 16 36 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 39 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.88 325.22 2.52 -73.36 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.28 Total: 23.73 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.07 Total: -3.33 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -3.80 Total: -108.63 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.06 Total: -30.88 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.88 2.52 -73.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450621292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.428 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds