Wall clock time and date at job start Mon Mar 30 2020 01:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.50697 * 109.47472 * 240.00052 * 2 1 3 5 5 H 1.07998 * 119.99931 * 240.00254 * 4 2 1 6 6 C 1.37878 * 119.99890 * 59.99239 * 4 2 1 7 7 N 1.31510 * 120.00276 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99883 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46777 * 90.00321 * 8 6 4 10 10 H 1.48503 * 109.47030 * 210.00105 * 8 6 4 11 11 H 1.48492 * 109.47275 * 330.00654 * 8 6 4 12 12 C 1.53007 * 109.47377 * 119.99789 * 2 1 3 13 13 N 1.46505 * 109.46736 * 300.00092 * 12 2 1 14 14 C 1.34781 * 119.99511 * 179.97438 * 13 12 2 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.38650 * 120.78792 * 269.71459 * 18 17 16 20 20 C 1.38207 * 119.16129 * 179.79528 * 19 18 17 21 21 N 1.31868 * 120.76474 * 0.49389 * 20 19 18 22 22 C 1.31874 * 121.72157 * 359.73831 * 21 20 19 23 23 C 1.38199 * 120.77057 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46951 * 299.99914 * 1 2 3 25 25 H 1.08993 * 109.47310 * 60.00417 * 1 2 3 26 26 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47397 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46440 * 300.00015 * 3 2 1 29 29 H 1.09000 * 109.47127 * 59.99710 * 3 2 1 30 30 H 0.96998 * 120.00482 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47144 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.46765 * 60.00103 * 12 2 1 33 33 H 0.97003 * 120.00113 * 0.02562 * 13 12 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 36 36 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 37 37 H 1.07998 * 120.42060 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.61581 * 180.20726 * 20 19 18 39 39 H 1.07998 * 119.61429 * 180.02562 * 22 21 20 40 40 H 1.07991 * 120.42226 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8300 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6696 15 8 2.5752 -1.4803 3.7811 16 7 1.4272 0.1438 4.7699 17 6 1.7812 -0.3566 6.1006 18 6 1.1575 0.5254 7.1513 19 6 1.8387 1.6252 7.6503 20 6 1.2331 2.4137 8.6103 21 7 0.0269 2.1245 9.0581 22 6 -0.6481 1.0842 8.6097 23 6 -0.1087 0.2531 7.6463 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 0.7087 1.1612 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6768 -1.7488 1.2493 33 1 0.9937 0.7579 2.3564 34 1 0.8699 0.9327 4.6810 35 1 1.4122 -1.3758 6.2154 36 1 2.8651 -0.3476 6.2157 37 1 2.8284 1.8647 7.2907 38 1 1.7557 3.2740 9.0017 39 1 -1.6340 0.8792 9.0001 40 1 -0.6663 -0.5975 7.2834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457376355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:23 Heat of formation + Delta-G solvation = -22.300704 kcal Electronic energy + Delta-G solvation = -20842.386597 eV Core-core repulsion = 17656.093975 eV Total energy + Delta-G solvation = -3186.292622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36837 -40.76212 -38.28119 -36.33703 -34.99714 -33.46551 -32.41764 -32.14249 -28.19836 -27.54923 -27.33731 -26.12600 -24.40150 -22.99486 -22.04411 -20.58107 -19.70425 -17.86047 -17.71469 -17.45003 -16.90758 -16.61981 -16.47705 -16.43577 -15.40716 -15.28526 -14.90623 -14.72172 -14.60607 -14.53703 -13.99302 -13.81425 -13.44570 -13.17483 -13.08589 -12.68029 -12.58533 -12.48045 -12.23564 -12.12951 -11.49316 -11.46963 -11.18102 -10.73173 -10.67608 -10.46436 -10.41309 -10.32876 -10.08735 -9.68123 -8.01466 -6.17037 0.10701 0.20027 1.43376 1.46333 1.54422 1.86593 2.19139 2.47125 2.87531 3.22343 3.44257 3.48151 3.61872 3.81381 4.14463 4.20923 4.42844 4.49232 4.55785 4.61115 4.72465 4.74001 4.91363 4.97185 5.01560 5.07399 5.11732 5.21681 5.35738 5.38665 5.41988 5.63278 5.68484 5.68655 5.75473 6.03581 6.16701 6.23447 6.44929 6.87592 7.01394 7.12993 7.50805 7.61499 8.97466 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.002997 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.421653 B = 9340.217402 C = 9564.042171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.699 3.301 15 O -0.639 6.639 16 N -0.730 5.730 17 C 0.183 3.817 18 C -0.065 4.065 19 C -0.153 4.153 20 C 0.089 3.911 21 N -0.508 5.508 22 C 0.089 3.911 23 C -0.153 4.153 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 3.957 19.823 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.399 3.601 15 O -0.521 6.521 16 N -0.387 5.387 17 C 0.059 3.941 18 C -0.073 4.073 19 C -0.173 4.173 20 C -0.067 4.067 21 N -0.217 5.217 22 C -0.067 4.067 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.242 0.758 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.195 0.805 39 H 0.195 0.805 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.613 3.702 20.403 20.900 hybrid contribution 0.307 -0.453 -1.839 1.919 sum -2.306 3.249 18.564 18.986 Atomic orbital electron populations 1.21661 0.97134 0.98646 1.00319 1.18353 0.93231 0.93028 0.90234 1.21662 0.97926 0.97855 1.00319 1.21288 1.31699 1.12182 0.91576 0.93669 1.25443 0.95162 0.95573 1.00948 1.69904 1.37064 1.23277 1.23585 0.85768 0.78682 0.78491 0.79923 1.20509 1.20862 1.20058 1.21127 0.96729 0.94680 0.83136 1.45208 1.55754 1.33208 1.03899 1.16129 0.80176 0.82621 0.81212 1.90870 1.45005 1.29600 1.86655 1.44909 1.56819 1.33261 1.03714 1.19984 0.99748 0.96242 0.78123 1.20266 0.94933 0.95696 0.96422 1.22332 1.02177 0.94881 0.97953 1.23180 0.90951 0.99157 0.93422 1.67721 1.08885 1.18286 1.26854 1.23178 1.00345 0.89790 0.93400 1.22328 0.95391 1.01667 0.97954 0.94483 0.91963 0.96322 0.96308 0.91966 0.94477 0.93048 0.94573 0.94555 0.75832 0.75597 0.90781 0.90790 0.83111 0.80533 0.80536 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.39 0.50 -52.92 -0.03 2.36 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 4 C -0.53 -27.86 8.01 25.60 0.21 -27.65 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.49 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 8 Si 0.94 42.43 29.54 68.60 2.03 44.45 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.17 7.11 4.50 86.38 0.39 7.50 16 13 N -0.73 -24.60 4.96 -478.53 -2.37 -26.98 16 14 C 0.70 23.32 8.57 179.05 1.53 24.85 16 15 O -0.64 -26.95 16.34 -3.98 -0.07 -27.01 16 16 N -0.73 -16.81 5.55 -482.29 -2.68 -19.49 16 17 C 0.18 3.62 5.85 85.63 0.50 4.12 16 18 C -0.06 -1.02 5.29 -19.67 -0.10 -1.12 16 19 C -0.15 -2.18 9.82 22.36 0.22 -1.96 16 20 C 0.09 1.32 11.18 84.68 0.95 2.26 16 21 N -0.51 -9.11 10.36 -195.85 -2.03 -11.14 16 22 C 0.09 1.31 11.18 84.68 0.95 2.26 16 23 C -0.15 -2.18 9.82 22.36 0.22 -1.96 16 24 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 25 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 3.05 6.07 -2.38 -0.01 3.03 16 29 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 30 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.41 11.81 6.18 -92.71 -0.57 11.24 16 34 H 0.41 7.42 8.48 -92.71 -0.79 6.63 16 35 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -64.63 331.03 1.21 -63.42 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.30 Total: 21.00 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.43 Total: 3.24 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -6.88 Total: -105.11 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.07 Total: -27.01 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -64.63 1.21 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457376355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.122 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds