Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47384 * 2 1 4 4 C 1.50699 * 109.46569 * 239.99878 * 2 1 3 5 5 H 1.08002 * 120.00233 * 239.99468 * 4 2 1 6 6 C 1.37883 * 120.00118 * 60.00649 * 4 2 1 7 7 N 1.31514 * 119.99781 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47180 * 120.00015 * 8 6 4 11 11 H 1.48510 * 109.47205 * 239.99428 * 8 6 4 12 12 C 1.52995 * 109.46867 * 120.00271 * 2 1 3 13 13 N 1.46500 * 109.47322 * 299.99698 * 12 2 1 14 14 C 1.34776 * 120.00304 * 180.02562 * 13 12 2 15 15 O 1.21603 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.47424 * 120.00309 * 180.02562 * 14 13 12 17 17 C 1.41710 * 126.49956 * 359.81460 * 16 14 13 18 18 N 1.30284 * 108.00873 * 179.97438 * 17 16 14 19 19 N 1.40515 * 109.02032 * 359.97438 * 18 17 16 20 20 C 1.34220 * 108.28096 * 0.22920 * 19 18 17 21 21 C 1.51387 * 110.37017 * 179.67565 * 20 19 18 22 22 C 1.54564 * 104.14530 * 343.53950 * 21 20 19 23 23 C 1.47252 * 140.81325 * 180.25496 * 19 18 17 24 24 H 1.09001 * 109.47043 * 299.99882 * 1 2 3 25 25 H 1.09004 * 109.47501 * 59.99876 * 1 2 3 26 26 H 1.09001 * 109.47744 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47186 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46902 * 300.00491 * 3 2 1 29 29 H 1.09001 * 109.46934 * 60.00052 * 3 2 1 30 30 H 0.97001 * 120.00052 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46878 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.47520 * 60.00005 * 12 2 1 33 33 H 0.96998 * 120.00066 * 359.97438 * 13 12 2 34 34 H 1.07998 * 126.00174 * 0.02695 * 17 16 14 35 35 H 1.08997 * 110.49619 * 224.87001 * 21 20 19 36 36 H 1.09002 * 110.49593 * 102.20197 * 21 20 19 37 37 H 1.09003 * 110.98784 * 266.93735 * 22 21 20 38 38 H 1.08999 * 111.02967 * 143.14291 * 22 21 20 39 39 H 1.09002 * 110.23109 * 78.05517 * 23 19 18 40 40 H 1.09000 * 110.22779 * 316.18379 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3222 -1.1196 -4.0079 9 1 3.1480 -2.2858 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5766 -1.4797 3.7811 16 6 1.3858 0.2037 4.8733 17 6 0.5700 1.3620 4.9039 18 7 0.3512 1.6677 6.1513 19 7 1.0055 0.7344 6.9731 20 6 1.6366 -0.1505 6.1855 21 6 2.3664 -1.1769 7.0256 22 6 2.4307 -0.5377 8.4314 23 6 1.2189 0.4179 8.3952 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9943 0.7582 2.3565 34 1 0.1946 1.8970 4.0441 35 1 3.3705 -1.3446 6.6361 36 1 1.8070 -2.1120 7.0567 37 1 3.3603 0.0153 8.5666 38 1 2.3107 -1.2914 9.2096 39 1 0.3384 -0.0743 8.8081 40 1 1.4390 1.3271 8.9548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458039481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = 41.560457 kcal Electronic energy + Delta-G solvation = -21458.014531 eV Core-core repulsion = 18274.491137 eV Total energy + Delta-G solvation = -3183.523394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.81989 -38.80106 -36.47959 -36.19524 -33.15088 -31.26690 -30.58466 -29.57643 -27.56264 -25.66672 -25.47583 -24.70742 -22.55108 -21.91824 -20.44151 -19.45039 -18.64232 -17.43198 -16.67638 -15.77672 -15.04455 -14.90145 -14.68898 -14.52900 -14.34560 -13.96081 -13.78506 -13.42775 -13.03633 -12.85112 -12.58609 -12.23817 -12.11313 -11.91551 -11.53153 -11.32718 -11.16835 -10.91348 -10.83533 -10.62226 -10.33030 -10.15896 -9.57503 -9.47609 -9.43111 -9.18925 -8.72624 -8.65190 -8.37314 -8.14532 -5.98064 -4.07737 1.56385 2.05722 2.24626 3.29990 3.38534 3.43209 3.75174 3.87248 3.95571 4.21567 4.35117 4.43545 4.49043 4.81426 5.05344 5.09020 5.21829 5.28737 5.31784 5.46156 5.58678 5.60224 5.88448 6.31023 6.40934 6.43122 6.57460 6.59209 6.86382 6.89012 7.01487 7.08519 7.14657 7.42339 7.57578 7.61456 7.74139 8.06600 8.15746 8.27264 8.44025 8.86285 8.94353 9.57857 11.03360 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041786 B = 0.003608 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.919681 B = 7758.451995 C = 8214.318718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.134 3.866 13 N -0.713 5.713 14 C 0.584 3.416 15 O -0.561 6.561 16 C -0.271 4.271 17 C 0.085 3.915 18 N -0.278 5.278 19 N -0.390 5.390 20 C 0.131 3.869 21 C -0.068 4.068 22 C -0.134 4.134 23 C 0.127 3.873 24 H 0.007 0.993 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.259 0.741 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.197 0.803 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 0.273 20.198 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.012 3.988 13 N -0.363 5.363 14 C 0.370 3.630 15 O -0.442 6.442 16 C -0.286 4.286 17 C -0.103 4.103 18 N -0.096 5.096 19 N -0.170 5.170 20 C -0.001 4.001 21 C -0.107 4.107 22 C -0.172 4.172 23 C 0.007 3.993 24 H 0.026 0.974 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.231 0.769 34 H 0.213 0.787 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.252 0.646 21.084 21.096 hybrid contribution 0.295 -0.458 -1.543 1.636 sum 0.043 0.188 19.542 19.543 Atomic orbital electron populations 1.21826 0.97754 0.99187 1.00064 1.18364 0.92814 0.92784 0.90616 1.21824 0.98591 0.98352 1.00064 1.21039 1.31287 1.12031 0.89898 0.92380 1.24882 0.94913 0.94939 0.98834 1.69817 1.36783 1.22821 1.23046 0.86528 0.78619 0.79757 0.83046 1.19760 1.21110 1.21112 1.21688 0.98100 0.95743 0.83283 1.46071 1.52756 1.31756 1.05680 1.17242 0.79900 0.83404 0.82425 1.90709 1.39571 1.26842 1.87047 1.19806 1.13290 1.03268 0.92242 1.24277 0.96008 0.94932 0.95041 1.77174 1.19345 1.11975 1.01124 1.50115 1.38570 1.21416 1.06949 1.22487 0.94080 0.92156 0.91408 1.20967 1.02239 0.96126 0.91380 1.22867 0.97765 0.98692 0.97879 1.22406 0.99601 1.00417 0.76894 0.97448 0.89642 0.95455 0.95452 0.89644 0.97447 0.93115 0.92753 0.92753 0.76921 0.78667 0.87659 0.88064 0.89282 0.87803 0.89114 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.05 1.29 0.50 -155.67 -0.08 1.21 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.74 9.35 55.43 0.52 -23.23 16 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.13 2.92 4.50 -4.04 -0.02 2.90 16 13 N -0.71 -13.33 4.95 -61.39 -0.30 -13.63 16 14 C 0.58 10.98 7.81 -12.52 -0.10 10.88 16 15 O -0.56 -12.13 16.90 5.27 0.09 -12.04 16 16 C -0.27 -4.31 6.15 -104.84 -0.64 -4.96 16 17 C 0.09 1.21 11.52 -16.88 -0.19 1.01 16 18 N -0.28 -4.04 12.64 30.92 0.39 -3.65 16 19 N -0.39 -4.89 4.81 -55.09 -0.27 -5.16 16 20 C 0.13 1.79 7.31 -81.22 -0.59 1.20 16 21 C -0.07 -0.65 6.86 -26.72 -0.18 -0.83 16 22 C -0.13 -0.74 7.18 -25.19 -0.18 -0.92 16 23 C 0.13 0.93 7.77 -2.91 -0.02 0.91 16 24 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.40 6.66 5.13 -40.82 -0.21 6.45 16 34 H 0.20 2.23 7.52 -52.49 -0.39 1.84 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -31.95 324.43 -7.20 -39.15 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.72 Total: 3.74 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.78 Total: -5.89 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.34 Total: -45.66 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.95 -7.20 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458039481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.707 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds