Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47384 * 2 1 4 4 C 1.50699 * 109.46569 * 239.99878 * 2 1 3 5 5 H 1.08002 * 120.00233 * 239.99468 * 4 2 1 6 6 C 1.37883 * 120.00118 * 60.00649 * 4 2 1 7 7 N 1.31514 * 119.99781 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47180 * 120.00015 * 8 6 4 11 11 H 1.48510 * 109.47205 * 239.99428 * 8 6 4 12 12 C 1.52995 * 109.46867 * 120.00271 * 2 1 3 13 13 N 1.46500 * 109.47322 * 299.99698 * 12 2 1 14 14 C 1.34776 * 120.00304 * 180.02562 * 13 12 2 15 15 O 1.21603 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.47424 * 120.00309 * 180.02562 * 14 13 12 17 17 C 1.41710 * 126.49956 * 359.81460 * 16 14 13 18 18 N 1.30284 * 108.00873 * 179.97438 * 17 16 14 19 19 N 1.40515 * 109.02032 * 359.97438 * 18 17 16 20 20 C 1.34220 * 108.28096 * 0.22920 * 19 18 17 21 21 C 1.51387 * 110.37017 * 179.67565 * 20 19 18 22 22 C 1.54564 * 104.14530 * 343.53950 * 21 20 19 23 23 C 1.47252 * 140.81325 * 180.25496 * 19 18 17 24 24 H 1.09001 * 109.47043 * 299.99882 * 1 2 3 25 25 H 1.09004 * 109.47501 * 59.99876 * 1 2 3 26 26 H 1.09001 * 109.47744 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47186 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46902 * 300.00491 * 3 2 1 29 29 H 1.09001 * 109.46934 * 60.00052 * 3 2 1 30 30 H 0.97001 * 120.00052 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46878 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.47520 * 60.00005 * 12 2 1 33 33 H 0.96998 * 120.00066 * 359.97438 * 13 12 2 34 34 H 1.07998 * 126.00174 * 0.02695 * 17 16 14 35 35 H 1.08997 * 110.49619 * 224.87001 * 21 20 19 36 36 H 1.09002 * 110.49593 * 102.20197 * 21 20 19 37 37 H 1.09003 * 110.98784 * 266.93735 * 22 21 20 38 38 H 1.08999 * 111.02967 * 143.14291 * 22 21 20 39 39 H 1.09002 * 110.23109 * 78.05517 * 23 19 18 40 40 H 1.09000 * 110.22779 * 316.18379 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3222 -1.1196 -4.0079 9 1 3.1480 -2.2858 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5766 -1.4797 3.7811 16 6 1.3858 0.2037 4.8733 17 6 0.5700 1.3620 4.9039 18 7 0.3512 1.6677 6.1513 19 7 1.0055 0.7344 6.9731 20 6 1.6366 -0.1505 6.1855 21 6 2.3664 -1.1769 7.0256 22 6 2.4307 -0.5377 8.4314 23 6 1.2189 0.4179 8.3952 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7081 1.1610 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.9943 0.7582 2.3565 34 1 0.1946 1.8970 4.0441 35 1 3.3705 -1.3446 6.6361 36 1 1.8070 -2.1120 7.0567 37 1 3.3603 0.0153 8.5666 38 1 2.3107 -1.2914 9.2096 39 1 0.3384 -0.0743 8.8081 40 1 1.4390 1.3271 8.9548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458039481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = 20.788446 kcal Electronic energy + Delta-G solvation = -21458.915273 eV Core-core repulsion = 18274.491137 eV Total energy + Delta-G solvation = -3184.424136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.80010 -40.32984 -38.00714 -37.26854 -34.90940 -32.82541 -31.87790 -30.42848 -28.59529 -27.53252 -27.35389 -26.39500 -23.51697 -22.89903 -21.49123 -20.76382 -20.38220 -18.70122 -17.74158 -17.43388 -16.64558 -16.50172 -16.11766 -15.71547 -15.47959 -14.97962 -14.81313 -14.64235 -14.37852 -14.36304 -13.97675 -13.92551 -13.16855 -13.08569 -13.00835 -12.66569 -12.55299 -12.49019 -12.22287 -12.13021 -12.09349 -11.98347 -11.45465 -11.22341 -10.84872 -10.65021 -10.37731 -10.33776 -10.00642 -9.55208 -7.99860 -6.15414 0.49726 1.10184 1.24398 1.43040 1.47046 1.56691 2.40091 2.49304 2.56338 3.08443 3.23676 3.48347 3.67329 3.90880 4.00108 4.16174 4.36076 4.47605 4.49784 4.55069 4.55956 4.72397 4.78705 4.87380 5.00106 5.04882 5.09243 5.09335 5.16166 5.23134 5.37752 5.41636 5.64731 5.68300 5.70017 5.70157 6.17817 6.24463 6.46322 6.54430 6.78645 6.88983 7.40112 7.52144 8.99304 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041786 B = 0.003608 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.919681 B = 7758.451995 C = 8214.318718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.151 3.849 13 N -0.707 5.707 14 C 0.585 3.415 15 O -0.596 6.596 16 C -0.309 4.309 17 C 0.088 3.912 18 N -0.300 5.300 19 N -0.386 5.386 20 C 0.130 3.870 21 C -0.075 4.075 22 C -0.114 4.114 23 C 0.113 3.887 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.406 0.594 34 H 0.215 0.785 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 0.479 22.430 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.027 3.973 13 N -0.358 5.358 14 C 0.374 3.626 15 O -0.479 6.479 16 C -0.324 4.324 17 C -0.100 4.100 18 N -0.119 5.119 19 N -0.166 5.166 20 C -0.005 4.005 21 C -0.113 4.113 22 C -0.152 4.152 23 C -0.005 4.005 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.243 0.757 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.129 0.871 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.462 0.884 23.351 23.372 hybrid contribution 0.355 -0.533 -2.124 2.219 sum -0.107 0.352 21.227 21.230 Atomic orbital electron populations 1.21672 0.97119 0.98675 1.00381 1.18361 0.93264 0.93048 0.90298 1.21670 0.97928 0.97868 1.00382 1.21312 1.31596 1.12123 0.91547 0.93672 1.25461 0.95172 0.95613 1.00979 1.69920 1.37062 1.23353 1.23498 0.85696 0.78104 0.78730 0.80197 1.19946 1.20755 1.20762 1.21263 0.97001 0.95046 0.83993 1.45867 1.52999 1.31944 1.04958 1.17627 0.79041 0.82914 0.82994 1.90677 1.41219 1.28485 1.87537 1.19669 1.15850 1.04857 0.91977 1.24562 0.95328 0.94346 0.95718 1.77090 1.20252 1.13121 1.01408 1.50596 1.37140 1.20196 1.08640 1.23103 0.93424 0.92816 0.91197 1.21189 1.01241 0.95849 0.93054 1.22932 0.97381 0.98809 0.96114 1.22960 1.01333 1.01912 0.74314 0.94486 0.91835 0.96327 0.96322 0.91838 0.94482 0.93071 0.94312 0.94311 0.75726 0.76840 0.88537 0.87144 0.88429 0.84087 0.87054 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 4 C -0.53 -28.30 8.01 25.60 0.21 -28.10 16 5 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.46 5.15 84.66 0.44 1.89 16 7 N -0.90 -48.44 9.35 21.45 0.20 -48.24 16 8 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.15 6.66 4.50 86.38 0.39 7.05 16 13 N -0.71 -26.33 4.95 -466.38 -2.31 -28.64 16 14 C 0.59 22.11 7.81 86.66 0.68 22.78 16 15 O -0.60 -26.23 16.90 -4.04 -0.07 -26.30 16 16 C -0.31 -9.64 6.15 -20.01 -0.12 -9.76 16 17 C 0.09 2.40 11.52 85.78 0.99 3.38 16 18 N -0.30 -8.27 12.64 -56.07 -0.71 -8.98 16 19 N -0.39 -8.85 4.81 -328.21 -1.58 -10.43 16 20 C 0.13 3.37 7.31 42.41 0.31 3.68 16 21 C -0.07 -1.27 6.86 30.60 0.21 -1.06 16 22 C -0.11 -0.83 7.18 31.59 0.23 -0.60 16 23 C 0.11 1.25 7.77 86.70 0.67 1.93 16 24 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 25 H 0.06 3.18 6.07 -2.38 -0.01 3.17 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 3.18 6.07 -2.38 -0.01 3.17 16 29 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 30 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 13.23 5.13 -92.71 -0.48 12.76 16 34 H 0.22 4.58 7.52 -2.91 -0.02 4.56 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -70.03 324.43 3.26 -66.77 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.57 Total: 16.97 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.13 Total: -6.22 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -4.40 Total: -96.28 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.30 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -70.03 3.26 -66.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458039481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.557 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds