Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.53005 * 109.47189 * 239.99988 * 2 1 3 5 5 N 1.46504 * 109.47067 * 59.99997 * 4 2 1 6 6 C 1.34771 * 120.00147 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00264 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00187 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99846 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99694 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47025 * 120.00097 * 14 12 10 17 17 H 1.48500 * 109.47017 * 239.99994 * 14 12 10 18 18 C 1.50706 * 109.47413 * 120.00057 * 2 1 3 19 19 C 1.38227 * 119.61686 * 285.02767 * 18 2 1 20 20 C 1.38627 * 119.15663 * 179.70253 * 19 18 2 21 21 C 1.38669 * 118.42388 * 0.51169 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.50231 * 21 20 19 23 23 N 1.31856 * 119.61480 * 104.99684 * 18 2 1 24 24 H 1.08992 * 109.47284 * 299.99609 * 1 2 3 25 25 H 1.08998 * 109.47466 * 59.99986 * 1 2 3 26 26 H 1.09010 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47670 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46868 * 300.00380 * 3 2 1 29 29 H 1.09001 * 109.46819 * 59.99917 * 3 2 1 30 30 H 1.09000 * 109.46825 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47119 * 300.00287 * 4 2 1 32 32 H 0.97002 * 119.99448 * 359.97438 * 5 4 2 33 33 H 0.97002 * 119.99331 * 359.97438 * 8 6 5 34 34 H 1.08992 * 109.47393 * 300.00330 * 9 8 6 35 35 H 1.09001 * 109.46684 * 60.00239 * 9 8 6 36 36 H 0.96996 * 119.99893 * 179.97438 * 13 12 10 37 37 H 1.07998 * 120.41947 * 359.94797 * 19 18 2 38 38 H 1.08008 * 120.78691 * 180.26734 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78749 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0306 -2.4455 6 6 1.8768 -0.4913 -3.6695 7 8 2.5751 -1.4805 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7811 -0.3568 -6.1006 10 6 1.1574 0.5253 -7.1513 11 1 0.5570 1.3735 -6.8573 12 6 1.3523 0.2487 -8.4880 13 7 2.0829 -0.7846 -8.8459 14 14 0.5798 1.3424 -9.7903 15 1 -0.1883 2.4295 -9.1318 16 1 1.6470 1.9327 -10.6375 17 1 -0.3340 0.5342 -10.6370 18 6 2.0324 -0.7104 1.2305 19 6 1.9664 -0.0793 2.4585 20 6 2.4255 -0.7440 3.5850 21 6 2.9461 -2.0202 3.4321 22 6 2.9801 -2.5870 2.1723 23 7 2.5293 -1.9271 1.1232 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7578 -2.3564 33 1 0.8692 0.9321 -4.6809 34 1 2.8648 -0.3478 -6.2158 35 1 1.4119 -1.3759 -6.2154 36 1 2.2198 -0.9794 -9.7862 37 1 1.5586 0.9174 2.5398 38 1 2.3825 -0.2774 4.5582 39 1 3.3161 -2.5660 4.2875 40 1 3.3802 -3.5821 2.0454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -6.019775 kcal Electronic energy + Delta-G solvation = -20876.622235 eV Core-core repulsion = 17691.035608 eV Total energy + Delta-G solvation = -3185.586628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77512 -39.11919 -37.01662 -34.05125 -33.11442 -32.72567 -32.12558 -30.26230 -27.52280 -27.46860 -25.96621 -23.83810 -23.43140 -22.29231 -20.13146 -19.63396 -18.17461 -16.99659 -16.54017 -15.92652 -15.54845 -15.34905 -15.11157 -14.59707 -14.42767 -14.19396 -13.89027 -13.51106 -13.33221 -13.24399 -12.89374 -12.55075 -12.30369 -12.05275 -11.90178 -11.59956 -11.38364 -11.19135 -10.93469 -10.86200 -10.85173 -10.24843 -10.11747 -9.55217 -9.29115 -9.27908 -9.19972 -8.68180 -8.53618 -7.64744 -6.09942 -4.16026 0.86434 1.05182 3.27450 3.33580 3.36821 3.49646 3.56991 3.95232 4.10433 4.36020 4.42304 4.59566 4.71800 4.79248 4.83421 4.90164 4.91862 5.24612 5.26053 5.32840 5.39285 5.46945 5.58259 5.60414 5.70843 5.87541 5.91354 5.95329 5.99480 6.17834 6.30547 6.45590 7.02557 7.22809 7.60958 7.64850 7.65778 7.81982 7.99738 8.12892 8.84252 9.05614 9.43012 9.58262 11.00458 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043930 B = 0.002958 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.223728 B = 9462.779012 C = 9889.932562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.142 4.142 4 C 0.166 3.834 5 N -0.758 5.758 6 C 0.692 3.308 7 O -0.599 6.599 8 N -0.732 5.732 9 C 0.267 3.733 10 C -0.539 4.539 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.148 3.852 19 C -0.168 4.168 20 C -0.076 4.076 21 C -0.182 4.182 22 C 0.104 3.896 23 N -0.474 5.474 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.388 0.612 33 H 0.385 0.615 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 3.764 26.313 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.199 4.199 4 C 0.041 3.959 5 N -0.417 5.417 6 C 0.392 3.608 7 O -0.478 6.478 8 N -0.384 5.384 9 C 0.146 3.854 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.010 3.990 19 C -0.188 4.188 20 C -0.102 4.102 21 C -0.202 4.202 22 C -0.053 4.053 23 N -0.182 5.182 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.222 0.778 33 H 0.217 0.783 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.422 2.312 25.170 25.316 hybrid contribution -0.850 1.589 0.283 1.824 sum -2.272 3.902 25.452 25.850 Atomic orbital electron populations 1.21876 0.92537 1.02833 1.02255 1.19747 0.96394 0.95140 0.91652 1.21952 1.01816 0.93775 1.02379 1.20862 0.98772 0.95665 0.80610 1.45249 1.58013 1.33565 1.04833 1.16137 0.80918 0.83394 0.80357 1.90878 1.43206 1.27792 1.85939 1.45696 1.54594 1.31687 1.06417 1.18957 0.96274 0.94995 0.75219 1.21276 1.32773 1.12810 0.90920 0.91945 1.24953 0.95162 0.95435 0.98580 1.69994 1.38130 1.27078 1.17119 0.86366 0.78964 0.80256 0.81324 1.19698 1.20855 1.20856 1.21020 0.93717 0.90468 0.93817 1.21904 1.02261 1.01579 0.93033 1.21561 0.95250 0.94470 0.98880 1.22146 1.02110 0.96665 0.99229 1.22826 0.94940 0.99559 0.87975 1.67565 1.09260 1.07898 1.33508 0.92304 0.91358 0.91974 0.92004 0.91326 0.92102 0.91915 0.90850 0.77843 0.78335 0.95813 0.95793 0.92570 0.84752 0.84963 0.84932 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.23 37.16 0.31 -0.97 16 2 C -0.03 -0.30 0.63 -155.66 -0.10 -0.40 16 3 C -0.14 -1.25 7.91 37.16 0.29 -0.96 16 4 C 0.17 2.47 3.90 -4.04 -0.02 2.46 16 5 N -0.76 -12.00 4.96 -65.22 -0.32 -12.33 16 6 C 0.69 15.09 8.57 -86.92 -0.74 14.34 16 7 O -0.60 -15.93 16.34 5.29 0.09 -15.84 16 8 N -0.73 -16.26 5.55 -66.42 -0.37 -16.63 16 9 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 10 C -0.54 -14.99 9.28 -34.44 -0.32 -15.30 16 11 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 14 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.15 1.62 5.56 -82.58 -0.46 1.16 16 19 C -0.17 -1.42 9.08 -39.44 -0.36 -1.77 16 20 C -0.08 -0.55 10.18 -39.28 -0.40 -0.95 16 21 C -0.18 -1.38 10.11 -39.44 -0.40 -1.78 16 22 C 0.10 1.01 11.18 -17.55 -0.20 0.82 16 23 N -0.47 -5.92 9.03 -9.47 -0.09 -6.00 16 24 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.07 0.60 6.86 -51.93 -0.36 0.25 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.58 6.86 -51.93 -0.36 0.23 16 29 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.25 7.85 -51.93 -0.41 0.85 16 32 H 0.39 4.84 6.18 -40.82 -0.25 4.59 16 33 H 0.38 7.25 8.34 -40.82 -0.34 6.91 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.13 0.84 6.73 -52.49 -0.35 0.49 16 38 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -35.25 333.93 -8.21 -43.46 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.75 Total: 6.42 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.52 Total: 5.65 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.04 Total: -60.89 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.25 -8.21 -43.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.438 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds