Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.53005 * 109.47189 * 239.99988 * 2 1 3 5 5 N 1.46504 * 109.47067 * 59.99997 * 4 2 1 6 6 C 1.34771 * 120.00147 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99963 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00264 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00187 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99846 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99694 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47283 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47025 * 120.00097 * 14 12 10 17 17 H 1.48500 * 109.47017 * 239.99994 * 14 12 10 18 18 C 1.50706 * 109.47413 * 120.00057 * 2 1 3 19 19 C 1.38227 * 119.61686 * 285.02767 * 18 2 1 20 20 C 1.38627 * 119.15663 * 179.70253 * 19 18 2 21 21 C 1.38669 * 118.42388 * 0.51169 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.50231 * 21 20 19 23 23 N 1.31856 * 119.61480 * 104.99684 * 18 2 1 24 24 H 1.08992 * 109.47284 * 299.99609 * 1 2 3 25 25 H 1.08998 * 109.47466 * 59.99986 * 1 2 3 26 26 H 1.09010 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47670 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46868 * 300.00380 * 3 2 1 29 29 H 1.09001 * 109.46819 * 59.99917 * 3 2 1 30 30 H 1.09000 * 109.46825 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47119 * 300.00287 * 4 2 1 32 32 H 0.97002 * 119.99448 * 359.97438 * 5 4 2 33 33 H 0.97002 * 119.99331 * 359.97438 * 8 6 5 34 34 H 1.08992 * 109.47393 * 300.00330 * 9 8 6 35 35 H 1.09001 * 109.46684 * 60.00239 * 9 8 6 36 36 H 0.96996 * 119.99893 * 179.97438 * 13 12 10 37 37 H 1.07998 * 120.41947 * 359.94797 * 19 18 2 38 38 H 1.08008 * 120.78691 * 180.26734 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78749 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.5517 -0.0306 -2.4455 6 6 1.8768 -0.4913 -3.6695 7 8 2.5751 -1.4805 -3.7811 8 7 1.4272 0.1437 -4.7700 9 6 1.7811 -0.3568 -6.1006 10 6 1.1574 0.5253 -7.1513 11 1 0.5570 1.3735 -6.8573 12 6 1.3523 0.2487 -8.4880 13 7 2.0829 -0.7846 -8.8459 14 14 0.5798 1.3424 -9.7903 15 1 -0.1883 2.4295 -9.1318 16 1 1.6470 1.9327 -10.6375 17 1 -0.3340 0.5342 -10.6370 18 6 2.0324 -0.7104 1.2305 19 6 1.9664 -0.0793 2.4585 20 6 2.4255 -0.7440 3.5850 21 6 2.9461 -2.0202 3.4321 22 6 2.9801 -2.5870 2.1723 23 7 2.5293 -1.9271 1.1232 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7578 -2.3564 33 1 0.8692 0.9321 -4.6809 34 1 2.8648 -0.3478 -6.2158 35 1 1.4119 -1.3759 -6.2154 36 1 2.2198 -0.9794 -9.7862 37 1 1.5586 0.9174 2.5398 38 1 2.3825 -0.2774 4.5582 39 1 3.3161 -2.5660 4.2875 40 1 3.3802 -3.5821 2.0454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -31.894920 kcal Electronic energy + Delta-G solvation = -20877.744266 eV Core-core repulsion = 17691.035608 eV Total energy + Delta-G solvation = -3186.708658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58291 -40.74890 -38.11561 -36.10311 -34.67961 -34.06827 -33.38008 -31.03697 -29.39431 -28.21995 -27.33369 -24.92348 -24.31175 -23.91225 -21.89292 -20.57087 -19.89890 -18.14832 -17.71059 -17.32827 -16.91689 -16.64219 -16.42188 -16.11301 -15.58585 -15.29816 -15.10749 -14.67665 -14.63426 -14.34420 -14.02305 -13.94562 -13.85221 -13.25798 -12.97727 -12.85845 -12.75606 -12.68948 -12.20215 -12.13899 -12.08886 -11.79708 -11.43083 -11.25843 -10.80571 -10.77133 -10.30223 -10.22039 -9.86218 -9.56327 -8.26954 -6.43520 0.21036 0.43370 1.44391 1.46467 1.59659 1.89884 2.26600 2.41012 2.88795 3.08000 3.21527 3.51725 3.68301 3.92147 3.94215 4.11584 4.13616 4.29399 4.32009 4.66177 4.67364 4.76319 4.79736 4.84204 4.93322 4.99447 5.05905 5.12129 5.23532 5.27051 5.28217 5.34441 5.38371 5.50574 5.54932 5.69941 5.85395 5.86663 6.28579 6.68731 7.13418 7.25824 7.34459 7.75048 8.85934 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043930 B = 0.002958 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.223728 B = 9462.779012 C = 9889.932562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 C -0.139 4.139 4 C 0.172 3.828 5 N -0.728 5.728 6 C 0.689 3.311 7 O -0.652 6.652 8 N -0.722 5.722 9 C 0.285 3.715 10 C -0.552 4.552 11 H 0.086 0.914 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.989 3.011 15 H -0.251 1.251 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.122 3.878 19 C -0.164 4.164 20 C -0.075 4.075 21 C -0.175 4.175 22 C 0.079 3.921 23 N -0.522 5.522 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.409 0.591 33 H 0.405 0.595 34 H -0.016 1.016 35 H -0.017 1.017 36 H 0.269 0.731 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 6.813 28.354 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.019 4.019 3 C -0.197 4.197 4 C 0.047 3.953 5 N -0.386 5.386 6 C 0.389 3.611 7 O -0.535 6.535 8 N -0.376 5.376 9 C 0.162 3.838 10 C -0.590 4.590 11 H 0.104 0.896 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.811 3.189 15 H -0.175 1.175 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.016 4.016 19 C -0.184 4.184 20 C -0.100 4.100 21 C -0.194 4.194 22 C -0.078 4.078 23 N -0.231 5.231 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.077 0.923 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.203 5.422 27.284 28.001 hybrid contribution -0.251 0.553 -0.228 0.648 sum -3.454 5.974 27.056 27.922 Atomic orbital electron populations 1.21882 0.91246 1.02166 1.03942 1.19691 0.97305 0.95720 0.89203 1.21970 1.01058 0.92449 1.04206 1.20830 0.97265 0.95122 0.82098 1.44940 1.56967 1.33662 1.03060 1.16343 0.80364 0.82731 0.81668 1.90843 1.45502 1.30229 1.86897 1.45261 1.55029 1.32373 1.04901 1.18410 0.93718 0.93586 0.78135 1.21632 1.32966 1.13275 0.91106 0.89628 1.26112 0.95403 0.96898 1.01415 1.70163 1.39698 1.29297 1.17974 0.85057 0.77948 0.78271 0.77578 1.17464 1.20463 1.20490 1.21130 0.95082 0.90536 0.94829 1.22168 1.01579 1.02513 0.92130 1.22023 0.93854 0.94124 1.00042 1.22469 1.00910 0.97078 0.98989 1.23108 0.95730 1.00204 0.88710 1.67466 1.10909 1.09330 1.35421 0.89420 0.90798 0.93848 0.93291 0.90892 0.88856 0.94470 0.93644 0.75267 0.75926 0.99834 0.99862 0.92265 0.82062 0.81489 0.82106 0.82022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.23 71.98 0.59 -1.66 16 2 C -0.02 -0.36 0.63 -52.93 -0.03 -0.40 16 3 C -0.14 -2.14 7.91 71.98 0.57 -1.57 16 4 C 0.17 5.35 3.90 86.38 0.34 5.69 16 5 N -0.73 -23.27 4.96 -478.52 -2.37 -25.65 16 6 C 0.69 31.14 8.57 179.06 1.53 32.67 16 7 O -0.65 -36.83 16.34 -4.00 -0.07 -36.90 16 8 N -0.72 -32.69 5.55 -482.31 -2.68 -35.37 16 9 C 0.28 16.44 5.43 85.64 0.46 16.90 16 10 C -0.55 -30.77 9.28 25.60 0.24 -30.53 16 11 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 14 Si 0.99 42.96 29.54 68.60 2.03 44.98 16 15 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 C 0.12 2.59 5.56 42.55 0.24 2.83 16 19 C -0.16 -2.30 9.08 22.36 0.20 -2.10 16 20 C -0.07 -0.85 10.18 22.47 0.23 -0.62 16 21 C -0.17 -2.31 10.11 22.36 0.23 -2.08 16 22 C 0.08 1.56 11.18 84.67 0.95 2.50 16 23 N -0.52 -13.56 9.03 -183.88 -1.66 -15.22 16 24 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 25 H 0.07 1.12 6.86 -2.39 -0.02 1.11 16 26 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.04 6.86 -2.39 -0.02 1.02 16 29 H 0.09 0.85 6.70 -2.39 -0.02 0.83 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.41 9.63 6.18 -92.71 -0.57 9.06 16 33 H 0.41 14.88 8.34 -92.71 -0.77 14.10 16 34 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.16 1.28 6.73 -2.91 -0.02 1.26 16 38 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -82.12 333.93 1.25 -80.88 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.29 Total: 22.49 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 6.00 Total: 22.15 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -6.43 Total: -133.60 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.07 Total: -36.90 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -82.12 1.25 -80.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.982 kcal (2) G-P(sol) polarization free energy of solvation -82.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds