Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 N 1.46505 * 109.47159 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99822 * 270.00200 * 4 3 2 6 6 H 1.08001 * 119.99765 * 33.38273 * 5 4 3 7 7 C 1.38811 * 119.99528 * 213.38746 * 5 4 3 8 8 N 1.31615 * 120.00197 * 24.65884 * 7 5 4 9 9 Si 1.86799 * 119.99538 * 204.65847 * 7 5 4 10 10 H 1.48503 * 109.47391 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47295 * 120.00052 * 9 7 5 12 12 H 1.48497 * 109.47255 * 239.99908 * 9 7 5 13 13 C 1.46501 * 119.99834 * 89.99770 * 4 3 2 14 14 C 1.50695 * 109.47183 * 264.69614 * 13 4 3 15 15 C 1.38229 * 120.41032 * 95.00400 * 14 13 4 16 16 C 1.39377 * 118.35045 * 180.02562 * 15 14 13 17 17 O 1.35517 * 120.51601 * 180.02562 * 16 15 14 18 18 N 1.32820 * 118.97520 * 0.27678 * 16 15 14 19 19 C 1.31774 * 120.72015 * 359.43552 * 18 16 15 20 20 C 1.50700 * 119.09280 * 180.29215 * 19 18 16 21 21 C 1.52994 * 117.50298 * 9.03015 * 20 19 18 22 22 C 1.52999 * 117.49973 * 300.36515 * 20 19 18 23 23 N 1.31789 * 121.80995 * 0.58077 * 19 18 16 24 24 H 1.08995 * 109.47030 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46862 * 300.00226 * 1 2 3 26 26 H 1.09009 * 109.46735 * 59.99855 * 1 2 3 27 27 H 1.09004 * 109.46950 * 240.00077 * 2 1 3 28 28 H 1.08997 * 109.47038 * 119.99885 * 2 1 3 29 29 H 1.09004 * 109.47135 * 60.00190 * 3 2 1 30 30 H 1.09003 * 109.47404 * 300.00152 * 3 2 1 31 31 H 0.97004 * 119.99916 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46302 * 144.69588 * 13 4 3 33 33 H 1.08997 * 109.47149 * 24.69957 * 13 4 3 34 34 H 1.08003 * 120.82628 * 359.97438 * 15 14 13 35 35 H 0.96702 * 113.99722 * 89.99831 * 17 16 15 36 36 H 1.09001 * 115.54396 * 154.70017 * 20 19 18 37 37 H 1.09009 * 117.49728 * 359.97438 * 21 20 19 38 38 H 1.09001 * 117.50188 * 145.01765 * 21 20 19 39 39 H 1.09005 * 117.49788 * 214.97963 * 22 20 19 40 40 H 1.09001 * 117.50003 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.4426 1.1869 6 1 3.7825 0.9281 2.0449 7 6 5.4055 2.1042 1.2864 8 7 5.6818 3.0998 0.4711 9 14 6.6500 1.5814 2.5776 10 1 6.1021 0.4457 3.3621 11 1 7.9082 1.1602 1.9106 12 1 6.9295 2.7221 3.4863 13 6 4.2381 1.4422 -1.2678 14 6 4.6032 0.0275 -1.6368 15 6 3.7951 -0.7048 -2.4862 16 6 4.1733 -2.0095 -2.7983 17 8 3.4139 -2.7665 -3.6269 18 7 5.2870 -2.5011 -2.2670 19 6 6.0318 -1.7666 -1.4657 20 6 7.2915 -2.3591 -0.8885 21 6 7.7488 -3.7138 -1.4328 22 6 7.1509 -3.6157 -0.0270 23 7 5.7024 -0.5300 -1.1506 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.5319 3.5618 0.5405 32 1 5.1460 2.0362 -1.1628 33 1 3.6115 1.8715 -2.0496 34 1 2.8926 -0.2769 -2.8972 35 1 3.6522 -2.6874 -4.5608 36 1 8.0636 -1.6418 -0.6102 37 1 7.1383 -4.1768 -2.2081 38 1 8.8219 -3.8881 -1.5122 39 1 7.8309 -3.7254 0.8178 40 1 6.1472 -4.0136 0.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459370332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 28.794332 kcal Electronic energy + Delta-G solvation = -22183.347745 eV Core-core repulsion = 18999.270770 eV Total energy + Delta-G solvation = -3184.076975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14376 -38.85537 -38.44109 -37.37565 -34.77399 -34.16083 -32.69633 -32.02268 -28.40521 -27.36632 -26.12668 -24.63526 -23.35928 -23.22015 -21.93426 -21.57551 -19.82025 -18.74739 -18.52301 -17.14550 -16.79964 -16.52307 -16.39527 -15.90374 -15.73034 -15.37666 -15.25956 -14.78161 -14.59384 -13.84148 -13.34049 -13.31903 -13.20537 -12.99175 -12.70328 -12.53651 -12.51134 -12.35574 -12.20102 -11.99720 -11.93624 -11.73867 -11.60404 -11.44341 -11.33668 -11.15931 -10.50922 -10.18903 -10.03620 -8.67249 -7.85354 -5.41845 -0.07426 0.11369 1.41528 1.48129 1.53942 2.35826 2.47419 2.56941 2.88179 3.16266 3.27083 3.51916 3.74581 3.87511 4.01777 4.11177 4.13504 4.20260 4.26677 4.36307 4.45800 4.61012 4.70598 4.72914 4.79155 4.86368 4.91102 4.92836 5.12116 5.14925 5.22199 5.28088 5.37450 5.40634 5.57176 5.61444 5.70343 6.13662 6.42421 6.57640 7.11919 7.28934 7.81771 8.28897 9.10141 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.008898 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.063633 B = 3145.885710 C = 4768.136229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.582 5.582 5 C -0.264 4.264 6 H 0.043 0.957 7 C -0.007 4.007 8 N -0.900 5.900 9 Si 0.940 3.060 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.288 1.288 13 C 0.176 3.824 14 C 0.188 3.812 15 C -0.246 4.246 16 C 0.353 3.647 17 O -0.477 6.477 18 N -0.559 5.559 19 C 0.352 3.648 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.153 4.153 23 N -0.531 5.531 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.253 0.747 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.165 0.835 35 H 0.425 0.575 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -10.059 -8.303 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.301 5.301 5 C -0.394 4.394 6 H 0.061 0.939 7 C -0.206 4.206 8 N -0.543 5.543 9 Si 0.769 3.231 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.215 1.215 13 C 0.049 3.951 14 C 0.041 3.959 15 C -0.270 4.270 16 C 0.166 3.834 17 O -0.287 6.287 18 N -0.286 5.286 19 C 0.085 3.915 20 C -0.149 4.149 21 C -0.162 4.162 22 C -0.191 4.191 23 N -0.247 5.247 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.287 0.713 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.664 -10.437 -7.476 12.946 hybrid contribution 0.115 0.337 0.077 0.364 sum -1.549 -10.100 -7.399 12.616 Atomic orbital electron populations 1.21640 0.93893 1.01674 1.02305 1.22033 0.96734 0.98947 0.99864 1.21123 0.82654 0.94390 0.99866 1.43849 1.00853 1.84199 1.01195 1.18939 1.03624 1.26522 0.90279 0.93925 1.25344 1.01004 0.94794 0.99452 1.70018 1.23364 1.19736 1.41175 0.85669 0.80429 0.77620 0.79390 1.20572 1.21318 1.21543 1.20046 0.99804 0.87921 0.87312 1.23228 0.86923 0.99716 0.86060 1.22869 1.04211 0.94827 1.05071 1.19438 0.86721 0.86477 0.90749 1.84680 1.54283 1.67305 1.22468 1.67551 1.07258 1.39296 1.14492 1.22363 0.94032 0.86048 0.89029 1.20744 0.94054 0.92492 1.07573 1.23061 1.02465 0.94363 0.96350 1.23028 1.02817 0.97285 0.95997 1.68140 1.19947 1.12928 1.23713 0.92608 0.92654 0.91403 0.93251 0.95690 0.93922 0.92426 0.93744 0.89545 0.91053 0.81792 0.71279 0.86038 0.87903 0.85451 0.86060 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.14 -4.87 6.26 30.60 0.19 -4.68 16 3 C 0.14 5.81 5.71 86.38 0.49 6.30 16 4 N -0.58 -28.27 2.45 -706.33 -1.73 -30.00 16 5 C -0.26 -14.58 9.44 84.03 0.79 -13.79 16 6 H 0.04 2.46 7.94 -2.91 -0.02 2.43 16 7 C -0.01 -0.39 4.96 84.86 0.42 0.04 16 8 N -0.90 -51.49 11.32 21.65 0.25 -51.25 16 9 Si 0.94 46.34 29.62 68.60 2.03 48.37 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 C 0.18 8.09 5.73 85.63 0.49 8.58 16 14 C 0.19 7.99 6.35 42.46 0.27 8.26 16 15 C -0.25 -8.51 8.12 22.54 0.18 -8.33 16 16 C 0.35 11.64 7.83 84.82 0.66 12.31 16 17 O -0.48 -11.98 13.58 -88.19 -1.20 -13.18 16 18 N -0.56 -20.19 9.38 -300.69 -2.82 -23.01 16 19 C 0.35 13.95 7.31 138.76 1.01 14.96 16 20 C -0.13 -4.24 6.23 -11.54 -0.07 -4.31 16 21 C -0.12 -3.04 10.01 30.62 0.31 -2.73 16 22 C -0.15 -4.20 10.24 30.62 0.31 -3.89 16 23 N -0.53 -24.21 10.27 -176.22 -1.81 -26.02 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.05 1.79 6.17 -2.38 -0.01 1.77 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 1.77 8.04 -2.38 -0.02 1.76 16 30 H 0.06 2.05 7.86 -2.39 -0.02 2.03 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.09 4.65 5.34 -2.39 -0.01 4.64 16 33 H 0.07 2.84 7.75 -2.39 -0.02 2.83 16 34 H 0.16 4.74 7.90 -2.91 -0.02 4.72 16 35 H 0.42 5.65 9.06 -74.06 -0.67 4.97 16 36 H 0.12 4.07 8.14 -2.39 -0.02 4.06 16 37 H 0.10 2.62 7.54 -2.38 -0.02 2.60 16 38 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.07 337.09 0.88 -67.19 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.38 Total: 18.17 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.78 Total: 9.73 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -6.11 Total: -130.28 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.20 Total: -13.18 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -68.07 0.88 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459370332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.985 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds