Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 N 1.46509 * 109.46795 * 119.99917 * 2 1 3 5 5 C 1.46497 * 119.99782 * 113.80491 * 4 2 1 6 6 C 1.50695 * 109.47344 * 90.00005 * 5 4 2 7 7 H 1.08002 * 120.00232 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99747 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47252 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46994 * 119.99978 * 10 8 6 13 13 H 1.48507 * 109.46877 * 239.99744 * 10 8 6 14 14 C 1.34778 * 119.99824 * 294.07394 * 4 2 1 15 15 O 1.21730 * 119.99715 * 185.36037 * 14 4 2 16 16 C 1.46146 * 120.00012 * 5.36861 * 14 4 2 17 17 C 1.35247 * 120.00075 * 184.82686 * 16 14 4 18 18 C 1.46438 * 120.00117 * 7.19229 * 17 16 14 19 19 C 1.38392 * 126.51607 * 235.69334 * 18 17 16 20 20 C 1.39179 * 107.64594 * 179.97438 * 19 18 17 21 21 N 1.30994 * 108.82575 * 359.97438 * 20 19 18 22 22 N 1.36794 * 126.50771 * 55.37526 * 18 17 16 23 23 C 1.46495 * 126.15862 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.47216 * 304.10193 * 1 2 3 25 25 H 1.09003 * 109.46753 * 64.09271 * 1 2 3 26 26 H 1.09000 * 109.47228 * 184.09458 * 1 2 3 27 27 H 1.08997 * 109.47285 * 239.99528 * 2 1 3 28 28 H 1.09003 * 109.46963 * 174.61093 * 3 2 1 29 29 H 1.09001 * 109.46853 * 294.61156 * 3 2 1 30 30 H 1.08997 * 109.46850 * 54.61269 * 3 2 1 31 31 H 1.09003 * 109.46583 * 210.00179 * 5 4 2 32 32 H 1.09005 * 109.47480 * 329.99315 * 5 4 2 33 33 H 0.97002 * 120.00277 * 180.02562 * 9 8 6 34 34 H 1.08006 * 120.00349 * 4.81430 * 16 14 4 35 35 H 1.08001 * 120.00400 * 187.20352 * 17 16 14 36 36 H 1.08003 * 126.18259 * 359.95183 * 19 18 17 37 37 H 1.07993 * 125.58732 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47500 * 95.72918 * 23 22 18 39 39 H 1.09009 * 109.47460 * 215.73279 * 23 22 18 40 40 H 1.08999 * 109.47001 * 335.72574 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.7452 -1.9559 1.0661 6 6 4.2200 -1.6765 0.9330 7 1 4.5799 -0.6583 0.9438 8 6 5.1100 -2.7208 0.7975 9 7 4.6718 -3.9608 0.7848 10 14 6.9383 -2.3745 0.6332 11 1 7.1703 -0.9085 0.6769 12 1 7.6677 -3.0252 1.7511 13 1 7.4302 -2.9148 -0.6597 14 6 1.7939 -0.1647 2.4168 15 8 2.2822 -0.6852 3.4029 16 6 0.9644 1.0304 2.5562 17 6 0.8187 1.6149 3.7671 18 6 1.6130 1.1486 4.9056 19 6 1.1264 0.7105 6.1248 20 6 2.2184 0.3618 6.9142 21 7 3.3169 0.5684 6.2311 22 7 2.9767 1.0577 4.9637 23 6 3.9129 1.4100 3.8935 24 1 -0.3633 0.5762 0.8509 25 1 -0.3633 0.4490 -0.9244 26 1 -0.3634 -1.0250 0.0734 27 1 1.8933 -0.5139 -0.8899 28 1 3.1258 1.4440 0.0965 29 1 1.7576 1.9277 -0.9343 30 1 1.6000 1.9834 0.8378 31 1 2.5697 -2.5683 1.9506 32 1 2.3946 -2.4870 0.1812 33 1 5.2980 -4.6956 0.6898 34 1 0.4677 1.4469 1.6923 35 1 0.1165 2.4255 3.8946 36 1 0.0871 0.6504 6.4122 37 1 2.1683 -0.0170 7.9242 38 1 4.2724 2.4277 4.0457 39 1 4.7570 0.7205 3.9075 40 1 3.4058 1.3439 2.9309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491346898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = 88.884600 kcal Electronic energy + Delta-G solvation = -22663.020987 eV Core-core repulsion = 19481.549722 eV Total energy + Delta-G solvation = -3181.471265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63769 -39.33829 -36.02057 -33.98431 -32.89560 -32.31171 -30.96896 -29.02107 -27.10228 -27.05237 -26.27807 -24.20872 -22.32721 -21.30042 -20.56477 -19.66871 -18.19211 -16.54439 -16.45955 -16.18314 -14.98294 -14.94167 -14.44852 -14.31549 -13.95833 -13.75715 -13.50570 -13.26888 -13.06575 -12.84251 -12.38139 -12.16334 -12.14893 -11.99774 -11.80041 -11.72092 -11.17807 -11.07367 -10.85278 -10.58035 -10.33516 -10.20536 -10.11102 -9.71689 -9.57561 -9.12205 -8.46365 -8.39463 -7.91518 -7.65729 -6.06918 -4.11600 1.15263 2.53036 3.07717 3.26926 3.30279 3.35220 3.37013 3.85982 3.88606 4.41929 4.75400 4.90513 5.02050 5.14159 5.27917 5.36469 5.37755 5.55022 5.58573 5.61469 5.67748 5.85017 5.89387 5.92359 6.00685 6.05702 6.12592 6.16548 6.27621 6.40811 6.46867 6.48945 7.05064 7.13373 7.40528 7.48848 7.52216 7.88803 8.19843 8.22330 8.38076 8.86704 9.05425 9.53507 11.01145 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.007440 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.457768 B = 3762.634366 C = 4922.835582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.133 3.867 3 C -0.178 4.178 4 N -0.586 5.586 5 C 0.248 3.752 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.521 3.479 15 O -0.521 6.521 16 C -0.194 4.194 17 C -0.045 4.045 18 C 0.126 3.874 19 C -0.267 4.267 20 C 0.035 3.965 21 N -0.293 5.293 22 N -0.327 5.327 23 C 0.110 3.890 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.175 0.825 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 13.288 1.055 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 C -0.236 4.236 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.560 4.560 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.215 4.215 17 C -0.067 4.067 18 C -0.003 4.003 19 C -0.297 4.297 20 C -0.148 4.148 21 N -0.116 5.116 22 N -0.108 5.108 23 C -0.031 4.031 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.192 0.808 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.984 12.738 1.452 15.103 hybrid contribution 0.103 -0.056 -0.402 0.419 sum -7.882 12.681 1.050 14.968 Atomic orbital electron populations 1.22583 0.96147 1.02827 1.01993 1.20986 0.92970 0.93189 0.90006 1.22608 1.02795 0.96178 1.01977 1.48294 1.54282 1.25114 1.04013 1.19294 0.90744 0.79120 0.97982 1.21394 0.91507 0.92987 1.50109 0.92517 1.24929 0.98988 0.94940 0.95211 1.69936 1.34801 0.98378 1.50148 0.86493 0.85245 0.78353 0.77624 1.19829 1.20896 1.20974 1.18134 0.81772 0.85070 0.84096 1.90930 1.50092 1.62071 1.36787 1.24344 1.01802 0.97201 0.98190 1.21706 0.96513 0.98388 0.90049 1.19833 0.84450 1.00901 0.95083 1.21500 0.99500 1.14949 0.93749 1.23395 0.90213 1.01232 0.99999 1.77198 1.23805 1.19182 0.91461 1.48563 1.03737 1.47512 1.10986 1.21794 0.93498 1.00072 0.87770 0.91726 0.91881 0.92014 0.88837 0.91579 0.91903 0.91663 0.94059 0.95148 0.92778 0.82859 0.83775 0.84194 0.80826 0.91974 0.89107 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.07 37.16 0.34 -1.80 16 2 C 0.13 2.03 3.26 -67.93 -0.22 1.81 16 3 C -0.18 -2.24 8.85 37.16 0.33 -1.91 16 4 N -0.59 -11.77 2.41 -169.20 -0.41 -12.17 16 5 C 0.25 6.32 5.07 -5.20 -0.03 6.30 16 6 C -0.52 -14.35 9.39 -34.44 -0.32 -14.67 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.52 10.32 5.24 -13.09 -0.07 10.25 16 15 O -0.52 -12.65 11.77 5.16 0.06 -12.59 16 16 C -0.19 -2.78 6.16 -37.48 -0.23 -3.01 16 17 C -0.05 -0.61 9.87 -37.35 -0.37 -0.98 16 18 C 0.13 2.16 4.76 -82.30 -0.39 1.77 16 19 C -0.27 -4.36 10.83 -39.18 -0.42 -4.78 16 20 C 0.03 0.59 11.96 -17.56 -0.21 0.38 16 21 N -0.29 -5.88 12.54 30.51 0.38 -5.50 16 22 N -0.33 -6.26 2.99 -64.07 -0.19 -6.45 16 23 C 0.11 1.94 10.11 59.84 0.61 2.55 16 24 H 0.06 0.70 4.77 -51.93 -0.25 0.46 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.51 7.85 -51.93 -0.41 1.10 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.73 4.46 -51.93 -0.23 0.50 16 31 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 32 H 0.03 0.79 7.98 -51.93 -0.41 0.38 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.15 1.71 3.28 -52.48 -0.17 1.54 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.08 1.48 5.01 -51.93 -0.26 1.22 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -34.67 323.90 -6.12 -40.80 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.47 Total: 2.50 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.09 Total: -2.46 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.52 Total: -49.90 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.06 Total: -12.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.67 -6.12 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491346898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.681 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds