Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 N 1.46509 * 109.46795 * 119.99917 * 2 1 3 5 5 C 1.46497 * 119.99782 * 113.80491 * 4 2 1 6 6 C 1.50695 * 109.47344 * 90.00005 * 5 4 2 7 7 H 1.08002 * 120.00232 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99747 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47252 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46994 * 119.99978 * 10 8 6 13 13 H 1.48507 * 109.46877 * 239.99744 * 10 8 6 14 14 C 1.34778 * 119.99824 * 294.07394 * 4 2 1 15 15 O 1.21730 * 119.99715 * 185.36037 * 14 4 2 16 16 C 1.46146 * 120.00012 * 5.36861 * 14 4 2 17 17 C 1.35247 * 120.00075 * 184.82686 * 16 14 4 18 18 C 1.46438 * 120.00117 * 7.19229 * 17 16 14 19 19 C 1.38392 * 126.51607 * 235.69334 * 18 17 16 20 20 C 1.39179 * 107.64594 * 179.97438 * 19 18 17 21 21 N 1.30994 * 108.82575 * 359.97438 * 20 19 18 22 22 N 1.36794 * 126.50771 * 55.37526 * 18 17 16 23 23 C 1.46495 * 126.15862 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.47216 * 304.10193 * 1 2 3 25 25 H 1.09003 * 109.46753 * 64.09271 * 1 2 3 26 26 H 1.09000 * 109.47228 * 184.09458 * 1 2 3 27 27 H 1.08997 * 109.47285 * 239.99528 * 2 1 3 28 28 H 1.09003 * 109.46963 * 174.61093 * 3 2 1 29 29 H 1.09001 * 109.46853 * 294.61156 * 3 2 1 30 30 H 1.08997 * 109.46850 * 54.61269 * 3 2 1 31 31 H 1.09003 * 109.46583 * 210.00179 * 5 4 2 32 32 H 1.09005 * 109.47480 * 329.99315 * 5 4 2 33 33 H 0.97002 * 120.00277 * 180.02562 * 9 8 6 34 34 H 1.08006 * 120.00349 * 4.81430 * 16 14 4 35 35 H 1.08001 * 120.00400 * 187.20352 * 17 16 14 36 36 H 1.08003 * 126.18259 * 359.95183 * 19 18 17 37 37 H 1.07993 * 125.58732 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47500 * 95.72918 * 23 22 18 39 39 H 1.09009 * 109.47460 * 215.73279 * 23 22 18 40 40 H 1.08999 * 109.47001 * 335.72574 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.7452 -1.9559 1.0661 6 6 4.2200 -1.6765 0.9330 7 1 4.5799 -0.6583 0.9438 8 6 5.1100 -2.7208 0.7975 9 7 4.6718 -3.9608 0.7848 10 14 6.9383 -2.3745 0.6332 11 1 7.1703 -0.9085 0.6769 12 1 7.6677 -3.0252 1.7511 13 1 7.4302 -2.9148 -0.6597 14 6 1.7939 -0.1647 2.4168 15 8 2.2822 -0.6852 3.4029 16 6 0.9644 1.0304 2.5562 17 6 0.8187 1.6149 3.7671 18 6 1.6130 1.1486 4.9056 19 6 1.1264 0.7105 6.1248 20 6 2.2184 0.3618 6.9142 21 7 3.3169 0.5684 6.2311 22 7 2.9767 1.0577 4.9637 23 6 3.9129 1.4100 3.8935 24 1 -0.3633 0.5762 0.8509 25 1 -0.3633 0.4490 -0.9244 26 1 -0.3634 -1.0250 0.0734 27 1 1.8933 -0.5139 -0.8899 28 1 3.1258 1.4440 0.0965 29 1 1.7576 1.9277 -0.9343 30 1 1.6000 1.9834 0.8378 31 1 2.5697 -2.5683 1.9506 32 1 2.3946 -2.4870 0.1812 33 1 5.2980 -4.6956 0.6898 34 1 0.4677 1.4469 1.6923 35 1 0.1165 2.4255 3.8946 36 1 0.0871 0.6504 6.4122 37 1 2.1683 -0.0170 7.9242 38 1 4.2724 2.4277 4.0457 39 1 4.7570 0.7205 3.9075 40 1 3.4058 1.3439 2.9309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491346898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = 65.503678 kcal Electronic energy + Delta-G solvation = -22664.034860 eV Core-core repulsion = 19481.549722 eV Total energy + Delta-G solvation = -3182.485138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96679 -40.78935 -37.48353 -35.52945 -34.69129 -33.65923 -32.54009 -30.35711 -28.99262 -28.03773 -27.61489 -25.82592 -24.05288 -22.57451 -21.86408 -21.04192 -19.51066 -18.69453 -17.78632 -17.65464 -16.65632 -16.33354 -16.04797 -15.85771 -15.32975 -15.13352 -14.73872 -14.53561 -14.41180 -14.13586 -13.99212 -13.63047 -13.46323 -13.34859 -13.19856 -13.05950 -12.96872 -12.76377 -12.45455 -12.20410 -12.01701 -11.66371 -11.59623 -11.31095 -10.95308 -10.68252 -10.57422 -9.76452 -9.42040 -9.14066 -8.24816 -6.38744 -0.03364 1.24652 1.30316 1.33508 1.43828 1.80018 2.02467 2.26912 2.43091 2.49327 3.04801 3.63608 3.69925 3.74448 4.04418 4.23874 4.27364 4.32240 4.37889 4.51946 4.57662 4.71846 4.76190 4.80476 4.85148 4.96401 4.98791 5.01466 5.07998 5.10841 5.19185 5.36555 5.40443 5.48413 5.58940 5.89050 5.90221 6.04478 6.21963 6.69475 6.84934 6.90658 7.27426 7.53415 8.81978 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.007440 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.457768 B = 3762.634366 C = 4922.835582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 C -0.170 4.170 4 N -0.592 5.592 5 C 0.266 3.734 6 C -0.527 4.527 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.288 1.288 13 H -0.269 1.269 14 C 0.514 3.486 15 O -0.578 6.578 16 C -0.198 4.198 17 C -0.021 4.021 18 C 0.110 3.890 19 C -0.275 4.275 20 C 0.029 3.971 21 N -0.346 5.346 22 N -0.344 5.344 23 C 0.113 3.887 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.086 0.914 31 H -0.011 1.011 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.195 0.805 35 H 0.204 0.796 36 H 0.172 0.828 37 H 0.204 0.796 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 16.447 0.377 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 C -0.227 4.227 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.566 4.566 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.214 1.214 13 H -0.194 1.194 14 C 0.305 3.695 15 O -0.459 6.459 16 C -0.219 4.219 17 C -0.041 4.041 18 C -0.019 4.019 19 C -0.304 4.304 20 C -0.153 4.153 21 N -0.170 5.170 22 N -0.126 5.126 23 C -0.028 4.028 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.007 0.993 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.211 0.789 35 H 0.221 0.779 36 H 0.189 0.811 37 H 0.220 0.780 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.811 15.937 0.736 18.729 hybrid contribution 0.610 -1.084 -0.135 1.251 sum -9.201 14.853 0.602 17.482 Atomic orbital electron populations 1.22510 0.92987 1.02399 1.04685 1.21352 0.95449 0.94159 0.87164 1.22555 1.01029 0.94372 1.04779 1.48285 1.53985 1.23672 1.06358 1.18649 0.90803 0.81410 0.94672 1.21664 0.92716 0.92854 1.49383 0.92691 1.25829 1.03763 0.94745 0.94926 1.70061 1.36421 0.99325 1.51265 0.85467 0.79475 0.78682 0.77831 1.18701 1.21420 1.19367 1.19031 0.81408 0.86235 0.82844 1.90910 1.52481 1.64090 1.38462 1.24237 1.01939 0.95535 1.00225 1.22351 0.95395 0.98518 0.87865 1.20620 0.84079 1.00503 0.96689 1.21981 1.00780 1.14273 0.93368 1.24029 0.89962 1.00111 1.01195 1.77118 1.25844 1.21345 0.92694 1.48681 1.04801 1.48242 1.10847 1.21741 0.92426 1.00889 0.87758 0.89851 0.88295 0.93991 0.90661 0.94326 0.88353 0.89583 0.99296 0.96520 0.92623 0.78868 0.77925 0.81084 0.77950 0.88679 0.92579 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.07 71.98 0.65 -2.86 16 2 C 0.12 3.55 3.26 44.99 0.15 3.70 16 3 C -0.17 -3.78 8.85 71.98 0.64 -3.14 16 4 N -0.59 -24.31 2.41 -807.41 -1.94 -26.25 16 5 C 0.27 14.44 5.07 85.63 0.43 14.88 16 6 C -0.53 -30.34 9.39 25.60 0.24 -30.10 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.34 5.46 84.65 0.46 0.81 16 9 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 10 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.51 20.35 5.24 86.30 0.45 20.80 16 15 O -0.58 -29.11 11.77 -4.44 -0.05 -29.16 16 16 C -0.20 -5.03 6.16 23.63 0.15 -4.88 16 17 C -0.02 -0.47 9.87 23.72 0.23 -0.23 16 18 C 0.11 3.55 4.76 40.54 0.19 3.75 16 19 C -0.28 -8.43 10.83 22.53 0.24 -8.19 16 20 C 0.03 0.99 11.96 85.04 1.02 2.00 16 21 N -0.35 -14.16 12.54 -57.40 -0.72 -14.88 16 22 N -0.34 -13.21 2.99 -356.62 -1.06 -14.28 16 23 C 0.11 4.07 10.11 127.77 1.29 5.36 16 24 H 0.08 1.42 4.77 -2.39 -0.01 1.41 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 2.43 7.85 -2.39 -0.02 2.41 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.54 4.46 -2.39 -0.01 1.53 16 31 H -0.01 -0.71 7.50 -2.39 -0.02 -0.73 16 32 H 0.02 0.93 7.98 -2.38 -0.02 0.92 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.19 3.25 3.28 -2.91 -0.01 3.24 16 35 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.20 5.14 8.06 -2.91 -0.02 5.12 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.08 2.89 5.01 -2.39 -0.01 2.88 16 Total: -1.00 -83.12 323.90 5.73 -77.39 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.04 Total: 14.69 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 6.15 Total: 1.90 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.44 Total: -112.68 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -83.12 5.73 -77.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491346898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.894 kcal (2) G-P(sol) polarization free energy of solvation -83.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds