Wall clock time and date at job start Mon Mar 30 2020 02:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 H 1.08995 * 109.46716 * 56.43014 * 3 2 1 5 5 C 1.50695 * 109.47399 * 176.43412 * 3 2 1 6 6 H 1.08000 * 120.00351 * 119.99804 * 5 3 2 7 7 C 1.37877 * 119.99857 * 299.99912 * 5 3 2 8 8 N 1.31511 * 120.00065 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46930 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47134 * 119.99578 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00042 * 9 7 5 13 13 N 1.46502 * 109.46863 * 296.43345 * 3 2 1 14 14 C 1.34778 * 120.00077 * 94.10611 * 13 3 2 15 15 O 1.21732 * 119.99783 * 354.64299 * 14 13 3 16 16 C 1.46150 * 119.99950 * 174.64174 * 14 13 3 17 17 C 1.35252 * 119.99677 * 183.99091 * 16 14 13 18 18 C 1.46431 * 120.00471 * 6.35067 * 17 16 14 19 19 C 1.38393 * 126.51332 * 236.64818 * 18 17 16 20 20 C 1.39180 * 107.64329 * 179.97438 * 19 18 17 21 21 N 1.30990 * 108.82958 * 0.02562 * 20 19 18 22 22 N 1.36808 * 126.51499 * 56.32855 * 18 17 16 23 23 C 1.46504 * 126.14838 * 0.02921 * 22 18 17 24 24 C 1.52998 * 109.47349 * 95.51485 * 23 22 18 25 25 H 1.08998 * 109.46997 * 56.31795 * 1 2 3 26 26 H 1.08997 * 109.47193 * 296.31146 * 1 2 3 27 27 H 1.09009 * 109.47004 * 176.30905 * 1 2 3 28 28 H 1.08999 * 109.47432 * 120.00072 * 2 1 3 29 29 H 1.09002 * 109.47399 * 240.00080 * 2 1 3 30 30 H 0.97004 * 119.99989 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00161 * 274.10444 * 13 3 2 32 32 H 1.08001 * 120.00488 * 3.98895 * 16 14 13 33 33 H 1.08005 * 119.99708 * 186.35016 * 17 16 14 34 34 H 1.08004 * 126.18101 * 359.96001 * 19 18 17 35 35 H 1.07999 * 125.58480 * 180.02562 * 20 19 18 36 36 H 1.09008 * 109.46418 * 215.50973 * 23 22 18 37 37 H 1.08994 * 109.47735 * 335.50849 * 23 22 18 38 38 H 1.08998 * 109.47417 * 64.97486 * 24 23 22 39 39 H 1.08990 * 109.47425 * 184.98306 * 24 23 22 40 40 H 1.09008 * 109.47041 * 304.98165 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6254 1.9744 0.8562 5 6 3.5444 1.4434 0.0884 6 1 4.1313 1.8944 -0.6981 7 6 4.1716 0.8684 1.1733 8 7 3.4570 0.3187 2.1307 9 14 6.0364 0.8688 1.2825 10 1 6.6021 1.5440 0.0869 11 1 6.4603 1.5944 2.5069 12 1 6.5292 -0.5308 1.3408 13 7 1.6231 2.1078 -1.2368 14 6 0.4864 2.8316 -1.2626 15 8 -0.2436 2.8531 -0.2887 16 6 0.1304 3.5905 -2.4597 17 6 -0.9675 4.3805 -2.4579 18 6 -1.7203 4.5851 -1.2187 19 6 -3.0653 4.3271 -1.0201 20 6 -3.3692 4.6616 0.2963 21 7 -2.2833 5.1011 0.8823 22 7 -1.2262 5.0621 -0.0354 23 6 0.1587 5.4635 0.2237 24 6 0.2954 6.9756 0.0345 25 1 -0.3633 0.5699 -0.8551 26 1 -0.3633 0.4555 0.9212 27 1 -0.3633 -1.0256 -0.0662 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.8982 -0.0862 2.8938 31 1 2.1651 2.0275 -2.0372 32 1 0.7438 3.5207 -3.3459 33 1 -1.2889 4.8604 -3.3705 34 1 -3.7548 3.9368 -1.7541 35 1 -4.3411 4.5733 0.7588 36 1 0.4281 5.1995 1.2465 37 1 0.8223 4.9490 -0.4711 38 1 -0.3005 7.4914 0.7875 39 1 1.3416 7.2619 0.1402 40 1 -0.0580 7.2508 -0.9593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492559034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:45 Heat of formation + Delta-G solvation = 58.855914 kcal Electronic energy + Delta-G solvation = -22317.500940 eV Core-core repulsion = 19134.727534 eV Total energy + Delta-G solvation = -3182.773407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67630 -38.92993 -35.37535 -34.04900 -33.28909 -32.40797 -30.96941 -29.14633 -28.80578 -27.03017 -24.12761 -23.37377 -22.47889 -20.65563 -20.38382 -19.57281 -18.81610 -17.25723 -16.17853 -15.88887 -15.15525 -14.86323 -14.71298 -14.27895 -13.89160 -13.72678 -13.71058 -13.22077 -12.88238 -12.72872 -12.25937 -12.15400 -11.99753 -11.75062 -11.52674 -11.29632 -11.04957 -10.99249 -10.85059 -10.33807 -10.27212 -10.16838 -9.73419 -9.69201 -9.23215 -9.10327 -8.53865 -8.45661 -7.98523 -7.81460 -6.15621 -4.25403 1.12374 2.47509 2.97961 3.20392 3.26143 3.28721 3.30692 3.86604 4.08940 4.36070 4.74620 4.87979 5.15591 5.18524 5.27507 5.30471 5.45958 5.53141 5.71265 5.86325 5.91646 6.04629 6.13242 6.17221 6.28142 6.33913 6.41773 6.46134 6.62036 6.99223 7.09190 7.16731 7.30946 7.39972 7.45716 7.57898 7.68960 7.89007 8.14221 8.18504 8.61121 8.74361 9.07730 9.42425 10.89490 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.005326 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.906035 B = 5256.069554 C = 5600.913513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.181 4.181 17 C -0.037 4.037 18 C 0.128 3.872 19 C -0.267 4.267 20 C 0.035 3.965 21 N -0.293 5.293 22 N -0.321 5.321 23 C 0.135 3.865 24 C -0.167 4.167 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.024 0.976 28 H 0.098 0.902 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 8.567 -9.643 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.410 6.410 16 C -0.204 4.204 17 C -0.059 4.059 18 C -0.001 4.001 19 C -0.296 4.296 20 C -0.149 4.149 21 N -0.116 5.116 22 N -0.103 5.103 23 C 0.014 3.986 24 C -0.226 4.226 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.191 0.809 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.675 8.968 -7.574 13.503 hybrid contribution 0.998 -0.682 -1.141 1.663 sum -5.676 8.286 -8.715 13.298 Atomic orbital electron populations 1.21739 0.98426 0.98109 1.00974 1.21917 0.92473 0.99894 1.02287 1.18788 0.93750 0.89095 0.81506 0.92982 1.21287 0.90683 1.38571 1.06760 0.92106 1.24891 0.98611 0.94815 0.95340 1.69904 1.35174 1.37214 1.09595 0.86427 0.84985 0.77812 0.78074 1.19764 1.20896 1.20865 1.46442 1.22509 1.49964 1.15844 1.18295 0.82631 0.81154 0.87945 1.90924 1.49588 1.64557 1.35939 1.23594 0.98277 0.98677 0.99816 1.21652 0.92912 0.96490 0.94834 1.19795 0.93122 0.99753 0.87442 1.21501 0.94068 1.15520 0.98520 1.23381 0.97521 1.00195 0.93756 1.77172 0.94772 1.24815 1.14857 1.48733 1.07811 1.47676 1.06104 1.21596 0.77928 0.94715 1.04367 1.22208 1.02667 0.95383 1.02300 0.94442 0.93477 0.95703 0.88349 0.95030 0.92603 0.78008 0.84835 0.83812 0.84280 0.80923 0.88843 0.89186 0.91884 0.90710 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.80 37.16 0.33 -2.68 16 2 C -0.13 -3.04 5.44 -26.73 -0.15 -3.18 16 3 C 0.27 6.55 2.22 -69.08 -0.15 6.39 16 4 H 0.05 1.48 7.38 -51.93 -0.38 1.10 16 5 C -0.53 -13.68 8.75 -34.44 -0.30 -13.99 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.88 -24.46 11.30 55.43 0.63 -23.83 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -13.62 4.77 -56.41 -0.27 -13.89 16 14 C 0.51 9.46 4.63 -13.09 -0.06 9.40 16 15 O -0.53 -11.61 10.01 5.16 0.05 -11.56 16 16 C -0.18 -2.44 9.35 -37.47 -0.35 -2.79 16 17 C -0.04 -0.47 9.86 -37.35 -0.37 -0.84 16 18 C 0.13 2.04 4.76 -82.29 -0.39 1.65 16 19 C -0.27 -4.10 10.83 -39.17 -0.42 -4.53 16 20 C 0.03 0.55 11.96 -17.56 -0.21 0.34 16 21 N -0.29 -5.47 12.54 30.51 0.38 -5.09 16 22 N -0.32 -5.65 2.57 -57.32 -0.15 -5.80 16 23 C 0.14 2.20 5.79 -4.04 -0.02 2.18 16 24 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 25 H 0.04 0.81 5.99 -51.93 -0.31 0.50 16 26 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 27 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.10 2.63 5.98 -51.93 -0.31 2.32 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.51 8.67 -40.82 -0.35 6.15 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.49 5.08 -51.93 -0.26 1.23 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.45 328.41 -7.06 -38.52 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.82 Total: 9.54 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.82 Total: -8.09 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.59 Total: -48.61 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.05 Total: -11.56 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.45 -7.06 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492559034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.371 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds