Wall clock time and date at job start Mon Mar 30 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 H 1.08997 * 109.47511 * 304.93234 * 3 2 1 5 5 C 1.50705 * 109.47293 * 184.93248 * 3 2 1 6 6 H 1.07993 * 120.00258 * 239.99901 * 5 3 2 7 7 C 1.37877 * 119.99752 * 60.00245 * 5 3 2 8 8 N 1.31515 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47322 * 59.99533 * 9 7 5 11 11 H 1.48495 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46654 * 299.99613 * 9 7 5 13 13 N 1.46502 * 109.46855 * 64.93409 * 3 2 1 14 14 C 1.34773 * 119.99766 * 270.30359 * 13 3 2 15 15 O 1.21738 * 120.00506 * 355.39398 * 14 13 3 16 16 C 1.46154 * 120.00015 * 175.39217 * 14 13 3 17 17 C 1.35253 * 120.00311 * 176.94105 * 16 14 13 18 18 C 1.46422 * 119.99668 * 7.00714 * 17 16 14 19 19 C 1.38397 * 126.51557 * 241.11105 * 18 17 16 20 20 C 1.39177 * 107.64537 * 179.97438 * 19 18 17 21 21 N 1.30988 * 108.83256 * 0.02562 * 20 19 18 22 22 N 1.36816 * 126.51738 * 60.80959 * 18 17 16 23 23 C 1.46494 * 126.14799 * 0.02562 * 22 18 17 24 24 C 1.52997 * 109.47405 * 95.70281 * 23 22 18 25 25 H 1.08997 * 109.47075 * 293.92383 * 1 2 3 26 26 H 1.09003 * 109.46652 * 173.92826 * 1 2 3 27 27 H 1.08993 * 109.47378 * 53.93003 * 1 2 3 28 28 H 1.08993 * 109.47751 * 120.00102 * 2 1 3 29 29 H 1.09004 * 109.47180 * 240.00397 * 2 1 3 30 30 H 0.97005 * 119.99559 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99991 * 90.31021 * 13 3 2 32 32 H 1.08005 * 119.99608 * 356.94178 * 16 14 13 33 33 H 1.08003 * 119.99725 * 187.00681 * 17 16 14 34 34 H 1.08000 * 126.18049 * 359.97316 * 19 18 17 35 35 H 1.08004 * 125.58772 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47318 * 215.70136 * 23 22 18 37 37 H 1.09003 * 109.47759 * 335.69968 * 23 22 18 38 38 H 1.09000 * 109.47591 * 184.98876 * 24 23 22 39 39 H 1.09006 * 109.46913 * 304.99344 * 24 23 22 40 40 H 1.09003 * 109.47297 * 64.98594 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6063 1.9812 -0.8425 5 6 3.5420 1.4443 -0.1222 6 1 4.1464 1.8892 0.6544 7 6 4.1446 0.8781 -1.2255 8 7 3.4086 0.3359 -2.1709 9 14 6.0065 0.8797 -1.3766 10 1 6.5970 0.1455 -0.2288 11 1 6.4008 0.2149 -2.6445 12 1 6.5018 2.2797 -1.3762 13 7 1.6510 2.0979 1.2512 14 6 0.4725 2.7465 1.3340 15 8 -0.2306 2.8601 0.3467 16 6 0.0385 3.3137 2.6092 17 6 -1.1141 4.0178 2.6790 18 6 -2.0034 4.0832 1.5176 19 6 -2.3770 5.2245 0.8297 20 6 -3.2276 4.8363 -0.2012 21 7 -3.3763 3.5356 -0.1596 22 7 -2.6184 3.0271 0.9026 23 6 -2.5071 1.6182 1.2883 24 6 -3.6857 1.2410 2.1879 25 1 -0.3633 0.4167 0.9394 26 1 -0.3633 -1.0220 -0.1087 27 1 -0.3634 0.6050 -0.8306 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8326 -0.0621 -2.9473 31 1 2.2416 2.0651 2.0198 32 1 0.6384 3.1704 3.4959 33 1 -1.3785 4.5318 3.5913 34 1 -2.0649 6.2341 1.0526 35 1 -3.6895 5.4989 -0.9182 36 1 -2.5184 0.9947 0.3942 37 1 -1.5732 1.4619 1.8283 38 1 -3.5568 0.2198 2.5466 39 1 -3.7266 1.9223 3.0379 40 1 -4.6135 1.3123 1.6203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492559035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:48 Heat of formation + Delta-G solvation = 58.374515 kcal Electronic energy + Delta-G solvation = -22393.882698 eV Core-core repulsion = 19211.088416 eV Total energy + Delta-G solvation = -3182.794282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66202 -38.90707 -35.33801 -34.17713 -33.29867 -32.39354 -30.98740 -29.21732 -28.79817 -27.05396 -24.17969 -23.26533 -22.69851 -20.64620 -20.25700 -19.62771 -18.88268 -17.27383 -16.16052 -15.90463 -15.17764 -14.72984 -14.69937 -14.39713 -14.05752 -13.71751 -13.63964 -13.21838 -12.83070 -12.69128 -12.39762 -12.20812 -11.98889 -11.88796 -11.56348 -11.31529 -11.11765 -11.01698 -10.82544 -10.35203 -10.28948 -10.15949 -9.75406 -9.62786 -9.24667 -9.10301 -8.56015 -8.44082 -8.01642 -7.77814 -6.14014 -4.23572 1.14503 2.43084 2.96356 3.23941 3.26406 3.29693 3.30597 3.87450 4.11806 4.37599 4.73578 4.82209 5.12709 5.17226 5.24692 5.28012 5.43408 5.50558 5.65487 5.79583 5.91834 6.02784 6.08401 6.15358 6.26482 6.28403 6.30006 6.44017 6.52330 6.90348 7.09305 7.11896 7.27698 7.40102 7.44563 7.57883 7.69176 7.88796 8.14395 8.17746 8.63030 8.75894 9.09576 9.43910 10.91173 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.004961 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.163606 B = 5642.556241 C = 5835.156773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.531 6.531 16 C -0.179 4.179 17 C -0.039 4.039 18 C 0.129 3.871 19 C -0.267 4.267 20 C 0.037 3.963 21 N -0.295 5.295 22 N -0.323 5.323 23 C 0.135 3.865 24 C -0.170 4.170 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 4.141 11.425 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.411 6.411 16 C -0.201 4.201 17 C -0.061 4.061 18 C 0.001 3.999 19 C -0.296 4.296 20 C -0.147 4.147 21 N -0.117 5.117 22 N -0.105 5.105 23 C 0.014 3.986 24 C -0.228 4.228 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.191 0.809 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.555 2.908 9.961 14.802 hybrid contribution 1.965 0.677 0.644 2.176 sum -8.591 3.585 10.606 14.111 Atomic orbital electron populations 1.21935 0.98893 0.98700 1.00375 1.21925 0.92282 0.99945 1.02413 1.18792 0.94224 0.88919 0.81276 0.92925 1.21205 0.90801 1.39023 1.06335 0.92222 1.24883 0.98584 0.94806 0.95360 1.69878 1.35237 1.37539 1.09341 0.86524 0.84909 0.78321 0.77444 1.20179 1.21122 1.20194 1.46424 1.18344 1.52689 1.17323 1.18304 0.83082 0.79889 0.88686 1.90905 1.54187 1.58577 1.37388 1.23617 0.97707 1.00175 0.98618 1.21652 0.92439 0.96484 0.95502 1.19778 0.96603 0.88277 0.95290 1.21506 1.08454 0.97758 1.01894 1.23379 0.99572 0.92650 0.99055 1.77158 1.17826 1.11190 1.05575 1.48703 1.34929 1.05540 1.21313 1.21735 0.98979 0.77894 1.00023 1.22237 0.98887 1.01873 0.99798 0.94841 0.95375 0.92899 0.94975 0.88164 0.92502 0.78007 0.84851 0.83834 0.84273 0.80907 0.88862 0.89121 0.90821 0.92387 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 7.89 37.16 0.29 -2.64 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.59 2.23 -69.08 -0.15 6.44 16 4 H 0.05 1.53 7.37 -51.93 -0.38 1.15 16 5 C -0.54 -13.96 8.74 -34.44 -0.30 -14.26 16 6 H 0.06 1.49 7.78 -52.49 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.65 11.29 55.43 0.63 -24.03 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.70 -13.82 4.92 -56.41 -0.28 -14.10 16 14 C 0.51 9.58 5.12 -13.09 -0.07 9.52 16 15 O -0.53 -11.73 10.04 5.15 0.05 -11.67 16 16 C -0.18 -2.41 9.32 -37.47 -0.35 -2.76 16 17 C -0.04 -0.50 9.78 -37.35 -0.37 -0.86 16 18 C 0.13 2.06 4.64 -82.29 -0.38 1.68 16 19 C -0.27 -4.16 10.83 -39.17 -0.42 -4.58 16 20 C 0.04 0.59 11.96 -17.56 -0.21 0.38 16 21 N -0.29 -5.43 12.54 30.51 0.38 -5.04 16 22 N -0.32 -5.55 2.58 -57.33 -0.15 -5.70 16 23 C 0.14 2.07 5.02 -4.05 -0.02 2.05 16 24 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 25 H 0.03 0.62 4.09 -51.93 -0.21 0.41 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.22 7.75 -51.93 -0.40 0.82 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.60 8.60 -40.82 -0.35 6.25 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 37 H 0.09 1.40 4.06 -51.93 -0.21 1.19 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -31.80 323.15 -6.96 -38.77 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.61 Total: 9.45 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.84 Total: -8.06 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.58 Total: -48.87 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.05 Total: -11.67 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.80 -6.96 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492559035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.141 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds