Wall clock time and date at job start Mon Mar 30 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 H 1.08997 * 109.47511 * 304.93234 * 3 2 1 5 5 C 1.50705 * 109.47293 * 184.93248 * 3 2 1 6 6 H 1.07993 * 120.00258 * 239.99901 * 5 3 2 7 7 C 1.37877 * 119.99752 * 60.00245 * 5 3 2 8 8 N 1.31515 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47322 * 59.99533 * 9 7 5 11 11 H 1.48495 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46654 * 299.99613 * 9 7 5 13 13 N 1.46502 * 109.46855 * 64.93409 * 3 2 1 14 14 C 1.34773 * 119.99766 * 270.30359 * 13 3 2 15 15 O 1.21738 * 120.00506 * 355.39398 * 14 13 3 16 16 C 1.46154 * 120.00015 * 175.39217 * 14 13 3 17 17 C 1.35253 * 120.00311 * 176.94105 * 16 14 13 18 18 C 1.46422 * 119.99668 * 7.00714 * 17 16 14 19 19 C 1.38397 * 126.51557 * 241.11105 * 18 17 16 20 20 C 1.39177 * 107.64537 * 179.97438 * 19 18 17 21 21 N 1.30988 * 108.83256 * 0.02562 * 20 19 18 22 22 N 1.36816 * 126.51738 * 60.80959 * 18 17 16 23 23 C 1.46494 * 126.14799 * 0.02562 * 22 18 17 24 24 C 1.52997 * 109.47405 * 95.70281 * 23 22 18 25 25 H 1.08997 * 109.47075 * 293.92383 * 1 2 3 26 26 H 1.09003 * 109.46652 * 173.92826 * 1 2 3 27 27 H 1.08993 * 109.47378 * 53.93003 * 1 2 3 28 28 H 1.08993 * 109.47751 * 120.00102 * 2 1 3 29 29 H 1.09004 * 109.47180 * 240.00397 * 2 1 3 30 30 H 0.97005 * 119.99559 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99991 * 90.31021 * 13 3 2 32 32 H 1.08005 * 119.99608 * 356.94178 * 16 14 13 33 33 H 1.08003 * 119.99725 * 187.00681 * 17 16 14 34 34 H 1.08000 * 126.18049 * 359.97316 * 19 18 17 35 35 H 1.08004 * 125.58772 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47318 * 215.70136 * 23 22 18 37 37 H 1.09003 * 109.47759 * 335.69968 * 23 22 18 38 38 H 1.09000 * 109.47591 * 184.98876 * 24 23 22 39 39 H 1.09006 * 109.46913 * 304.99344 * 24 23 22 40 40 H 1.09003 * 109.47297 * 64.98594 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6063 1.9812 -0.8425 5 6 3.5420 1.4443 -0.1222 6 1 4.1464 1.8892 0.6544 7 6 4.1446 0.8781 -1.2255 8 7 3.4086 0.3359 -2.1709 9 14 6.0065 0.8797 -1.3766 10 1 6.5970 0.1455 -0.2288 11 1 6.4008 0.2149 -2.6445 12 1 6.5018 2.2797 -1.3762 13 7 1.6510 2.0979 1.2512 14 6 0.4725 2.7465 1.3340 15 8 -0.2306 2.8601 0.3467 16 6 0.0385 3.3137 2.6092 17 6 -1.1141 4.0178 2.6790 18 6 -2.0034 4.0832 1.5176 19 6 -2.3770 5.2245 0.8297 20 6 -3.2276 4.8363 -0.2012 21 7 -3.3763 3.5356 -0.1596 22 7 -2.6184 3.0271 0.9026 23 6 -2.5071 1.6182 1.2883 24 6 -3.6857 1.2410 2.1879 25 1 -0.3633 0.4167 0.9394 26 1 -0.3633 -1.0220 -0.1087 27 1 -0.3634 0.6050 -0.8306 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8326 -0.0621 -2.9473 31 1 2.2416 2.0651 2.0198 32 1 0.6384 3.1704 3.4959 33 1 -1.3785 4.5318 3.5913 34 1 -2.0649 6.2341 1.0526 35 1 -3.6895 5.4989 -0.9182 36 1 -2.5184 0.9947 0.3942 37 1 -1.5732 1.4619 1.8283 38 1 -3.5568 0.2198 2.5466 39 1 -3.7266 1.9223 3.0379 40 1 -4.6135 1.3123 1.6203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492559035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:48 Heat of formation + Delta-G solvation = 37.147135 kcal Electronic energy + Delta-G solvation = -22394.803186 eV Core-core repulsion = 19211.088416 eV Total energy + Delta-G solvation = -3183.714770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89033 -40.41466 -37.08305 -35.35653 -34.49009 -34.27903 -32.73588 -30.42086 -30.00333 -28.88826 -25.68224 -24.58974 -24.21927 -21.95127 -21.62119 -21.33453 -20.27250 -18.76579 -17.81145 -17.37644 -16.77191 -16.18912 -16.09020 -15.80047 -15.47775 -14.94586 -14.87269 -14.60450 -14.43685 -14.05402 -13.94313 -13.44807 -13.28964 -13.19797 -13.12089 -12.95884 -12.89047 -12.67264 -12.23575 -12.17038 -11.96553 -11.62379 -11.48304 -11.09110 -10.89687 -10.61141 -10.50330 -9.75879 -9.57162 -9.13931 -8.16752 -6.34223 0.04007 1.24100 1.42866 1.44594 1.52299 1.81026 2.05511 2.35540 2.51597 2.77625 3.12887 3.63366 3.71414 4.06711 4.10710 4.19809 4.32957 4.46807 4.52954 4.55992 4.63794 4.71345 4.76580 4.81732 4.92894 5.03022 5.04944 5.12023 5.18692 5.23893 5.38969 5.40725 5.55401 5.65378 5.79892 5.92356 5.98157 6.17789 6.28817 6.75445 6.95026 7.05747 7.33973 7.65705 8.87801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.004961 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.163606 B = 5642.556241 C = 5835.156773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.572 6.572 16 C -0.183 4.183 17 C -0.019 4.019 18 C 0.113 3.887 19 C -0.281 4.281 20 C 0.028 3.972 21 N -0.342 5.342 22 N -0.333 5.333 23 C 0.132 3.868 24 C -0.158 4.158 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.017 0.983 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.180 0.820 33 H 0.197 0.803 34 H 0.163 0.837 35 H 0.199 0.801 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 4.870 14.603 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.453 6.453 16 C -0.205 4.205 17 C -0.040 4.040 18 C -0.016 4.016 19 C -0.310 4.310 20 C -0.154 4.154 21 N -0.165 5.165 22 N -0.115 5.115 23 C 0.011 3.989 24 C -0.216 4.216 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.239 0.761 32 H 0.198 0.802 33 H 0.214 0.786 34 H 0.181 0.819 35 H 0.216 0.784 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.016 3.645 13.184 16.954 hybrid contribution 1.732 0.515 -0.399 1.850 sum -8.285 4.161 12.785 15.793 Atomic orbital electron populations 1.21731 0.97054 0.99282 0.99989 1.21751 0.93786 0.99064 1.01293 1.18265 0.93282 0.89011 0.81671 0.98835 1.21603 0.91816 1.38620 1.06605 0.91188 1.25768 1.03205 0.94485 0.95076 1.70053 1.37089 1.38500 1.09878 0.85464 0.79332 0.78350 0.77592 1.18654 1.21367 1.19879 1.46156 1.19482 1.53089 1.16168 1.19171 0.81971 0.78900 0.90335 1.90911 1.55047 1.59776 1.39573 1.23586 0.99079 1.00635 0.97206 1.22216 0.90852 0.95189 0.95736 1.20492 0.96698 0.88082 0.96293 1.21923 1.08372 0.98957 1.01719 1.23930 0.99505 0.92385 0.99612 1.77083 1.19762 1.12530 1.07123 1.48869 1.35101 1.06270 1.21238 1.21772 1.00494 0.77160 0.99441 1.22162 0.96740 1.03493 0.99176 0.92806 0.93458 0.96389 0.93664 0.91479 0.92753 0.76143 0.80238 0.78620 0.81931 0.78448 0.91589 0.89249 0.88488 0.91100 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 7.89 71.98 0.57 -4.66 16 2 C -0.12 -5.72 5.45 30.59 0.17 -5.56 16 3 C 0.28 14.14 2.23 44.25 0.10 14.24 16 4 H -0.01 -0.39 7.37 -2.39 -0.02 -0.41 16 5 C -0.55 -28.83 8.74 25.60 0.22 -28.60 16 6 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 7 C 0.01 0.79 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.03 11.29 21.45 0.24 -52.79 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 N -0.70 -27.18 4.92 -450.57 -2.22 -29.40 16 14 C 0.51 18.43 5.12 86.30 0.44 18.87 16 15 O -0.57 -25.74 10.04 -4.47 -0.04 -25.78 16 16 C -0.18 -4.28 9.32 23.64 0.22 -4.06 16 17 C -0.02 -0.41 9.78 23.71 0.23 -0.18 16 18 C 0.11 3.43 4.64 40.54 0.19 3.62 16 19 C -0.28 -8.38 10.83 22.53 0.24 -8.14 16 20 C 0.03 0.90 11.96 85.04 1.02 1.92 16 21 N -0.34 -12.87 12.54 -57.40 -0.72 -13.59 16 22 N -0.33 -11.40 2.58 -335.28 -0.87 -12.26 16 23 C 0.13 4.02 5.02 86.38 0.43 4.46 16 24 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 25 H 0.05 2.02 4.09 -2.39 -0.01 2.01 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.02 0.85 7.75 -2.39 -0.02 0.83 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 3.67 5.95 -2.38 -0.01 3.66 16 30 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.40 12.95 8.60 -92.71 -0.80 12.16 16 32 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.20 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.07 2.32 7.54 -2.38 -0.02 2.30 16 37 H 0.09 2.67 4.06 -2.39 -0.01 2.66 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.01 323.15 3.69 -70.32 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.25 Total: 28.83 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.02 Total: -9.56 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.56 Total: -108.04 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.78 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -74.01 3.69 -70.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492559035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.468 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds