Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21707 * 120.00025 * 359.97438 * 14 13 3 16 16 C 1.46321 * 119.99781 * 179.97438 * 14 13 3 17 17 C 1.35166 * 119.99895 * 179.97438 * 16 14 13 18 18 C 1.46533 * 120.00141 * 180.02562 * 17 16 14 19 19 N 1.31897 * 125.87639 * 359.69743 * 18 17 16 20 20 C 1.33164 * 109.21431 * 179.82936 * 19 18 17 21 21 C 1.35513 * 108.44964 * 0.43601 * 20 19 18 22 22 N 1.36246 * 107.09846 * 359.73534 * 21 20 19 23 23 C 1.46505 * 126.49969 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.47018 * 265.00150 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08003 * 120.00288 * 0.02562 * 16 14 13 33 33 H 1.07999 * 120.00275 * 0.02562 * 17 16 14 34 34 H 1.08009 * 125.77406 * 180.19238 * 20 19 18 35 35 H 1.08001 * 126.44565 * 179.77618 * 21 20 19 36 36 H 1.08999 * 109.47124 * 25.00482 * 23 22 21 37 37 H 1.09001 * 109.46470 * 144.99949 * 23 22 21 38 38 H 1.09002 * 109.47041 * 180.02562 * 24 23 22 39 39 H 1.08999 * 109.47444 * 300.00136 * 24 23 22 40 40 H 1.08999 * 109.47008 * 60.00881 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3423 2.6318 -0.4312 16 6 0.0482 3.3189 -2.6172 17 6 -1.1728 3.8870 -2.7329 18 6 -1.5605 4.5420 -3.9850 19 7 -0.8114 4.6496 -5.0653 20 6 -1.4909 5.3016 -6.0067 21 6 -2.7080 5.6285 -5.5084 22 7 -2.7596 5.1525 -4.2328 23 6 -3.8853 5.2722 -3.3028 24 6 -3.6784 6.4946 -2.4064 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8770 0.4827 2.1133 31 1 2.2720 2.1231 -1.9978 32 1 0.7380 3.3474 -3.4478 33 1 -1.8627 3.8582 -1.9025 34 1 -1.1313 5.5344 -6.9982 35 1 -3.4900 6.1647 -6.0254 36 1 -4.8113 5.3873 -3.8662 37 1 -3.9441 4.3752 -2.6864 38 1 -4.5157 6.5835 -1.7142 39 1 -2.7524 6.3796 -1.8430 40 1 -3.6196 7.3915 -3.0230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492606545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = 38.719496 kcal Electronic energy + Delta-G solvation = -21053.472881 eV Core-core repulsion = 17869.826294 eV Total energy + Delta-G solvation = -3183.646587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.13969 -39.19365 -35.46223 -35.27175 -33.47851 -32.34243 -31.46511 -30.42250 -28.83660 -27.46693 -24.52248 -23.72109 -22.53400 -21.62223 -20.60736 -19.61483 -18.91641 -17.63519 -17.07015 -15.98967 -15.67817 -15.58471 -15.10741 -14.74256 -14.28184 -14.16835 -13.85618 -13.54219 -13.37834 -13.01845 -12.92033 -12.46059 -12.37157 -11.98191 -11.90299 -11.75596 -11.70437 -11.07273 -10.87503 -10.61009 -10.22701 -10.13598 -9.90244 -9.84014 -9.56222 -9.22627 -9.16197 -8.72784 -8.16828 -7.93855 -6.18181 -4.20512 0.89204 2.22693 2.45772 3.17455 3.25457 3.37136 3.42154 3.89833 3.94409 4.25349 4.33891 4.41282 4.55596 4.61957 4.79706 5.12597 5.14244 5.15303 5.24084 5.32853 5.46141 5.55265 5.68363 5.99455 6.01654 6.05245 6.19412 6.29643 6.35470 6.60673 6.69267 6.72626 6.87056 6.93276 6.98761 7.30854 7.32657 7.54066 7.91027 8.18808 8.56234 8.79268 8.95976 9.42535 10.93964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.003615 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.227817 B = 7743.956844 C = 8130.646302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.241 3.759 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.690 5.690 14 C 0.531 3.469 15 O -0.555 6.555 16 C -0.141 4.141 17 C -0.035 4.035 18 C 0.223 3.777 19 N -0.468 5.468 20 C -0.026 4.026 21 C -0.051 4.051 22 N -0.447 5.447 23 C 0.097 3.903 24 C -0.171 4.171 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.267 0.733 31 H 0.398 0.602 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.961 8.630 -11.425 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.336 5.336 14 C 0.318 3.682 15 O -0.436 6.436 16 C -0.166 4.166 17 C -0.056 4.056 18 C -0.033 4.033 19 N -0.186 5.186 20 C -0.178 4.178 21 C -0.186 4.186 22 N -0.129 5.129 23 C -0.025 4.025 24 C -0.229 4.229 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.189 0.811 35 H 0.192 0.808 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.664 8.260 -10.604 23.000 hybrid contribution -0.944 -0.080 0.282 0.988 sum -19.608 8.180 -10.323 23.621 Atomic orbital electron populations 1.21879 0.96970 0.98995 1.02265 1.22286 0.94360 0.99916 1.01155 1.19177 0.95675 0.88535 0.82832 0.93203 1.21073 0.88615 1.39740 1.07880 0.90093 1.24837 0.94866 0.95167 0.97672 1.69870 1.08690 1.44552 1.29800 0.86898 0.80959 0.79956 0.80876 1.20246 1.22207 1.18460 1.46105 1.14622 1.54904 1.18015 1.18168 0.82874 0.79571 0.87573 1.90766 1.51648 1.60662 1.40569 1.23237 0.97182 0.97968 0.98186 1.20961 0.97312 0.95633 0.91717 1.21621 0.83123 1.02242 0.96293 1.70395 1.30443 1.18224 0.99569 1.22357 0.91998 1.03392 1.00032 1.22846 1.02106 1.07555 0.86110 1.45658 1.13775 1.41428 1.12005 1.21943 0.87502 1.01069 0.91962 1.22178 1.03807 0.97037 0.99875 0.95015 0.92871 0.92893 0.92776 0.92210 0.92307 0.76828 0.84447 0.84186 0.81119 0.80772 0.88787 0.88516 0.90251 0.91235 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.75 1.83 -69.08 -0.13 5.63 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.57 9.31 -34.44 -0.32 -14.89 16 6 H 0.08 2.32 7.98 -52.48 -0.42 1.90 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 9 Si 0.88 21.83 24.41 -169.99 -4.15 17.68 16 10 H -0.28 -6.60 6.83 56.52 0.39 -6.21 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.69 -13.90 5.02 -56.35 -0.28 -14.18 16 14 C 0.53 10.08 6.31 -13.01 -0.08 9.99 16 15 O -0.56 -11.89 13.37 5.18 0.07 -11.82 16 16 C -0.14 -2.18 9.65 -37.43 -0.36 -2.54 16 17 C -0.03 -0.48 9.30 -37.33 -0.35 -0.83 16 18 C 0.22 2.98 7.66 -154.53 -1.18 1.79 16 19 N -0.47 -6.74 10.76 -11.42 -0.12 -6.86 16 20 C -0.03 -0.29 11.84 -17.95 -0.21 -0.51 16 21 C -0.05 -0.47 11.57 -16.56 -0.19 -0.66 16 22 N -0.45 -4.55 2.78 -114.55 -0.32 -4.87 16 23 C 0.10 0.66 6.60 -4.04 -0.03 0.63 16 24 C -0.17 -1.11 10.24 37.16 0.38 -0.73 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.05 5.64 -51.93 -0.29 0.76 16 27 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 28 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.40 7.20 8.52 -40.82 -0.35 6.85 16 32 H 0.14 2.01 7.72 -52.48 -0.41 1.60 16 33 H 0.14 1.85 7.09 -52.49 -0.37 1.48 16 34 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.64 7.65 -51.93 -0.40 0.24 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -33.25 329.69 -7.17 -40.42 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.72 Total: 6.32 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.39 Total: -5.82 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.05 Total: -51.75 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.25 -7.17 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492606545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.143 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds