Wall clock time and date at job start Mon Mar 30 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47463 * 2 1 4 4 H 1.09008 * 109.46966 * 54.99864 * 3 2 1 5 5 C 1.50703 * 109.47308 * 174.99482 * 3 2 1 6 6 H 1.08000 * 119.99665 * 119.99899 * 5 3 2 7 7 C 1.37870 * 120.00523 * 300.00565 * 5 3 2 8 8 N 1.31520 * 119.99835 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00429 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47029 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47283 * 119.99840 * 9 7 5 12 12 H 1.48501 * 109.47289 * 239.99970 * 9 7 5 13 13 N 1.46497 * 109.47549 * 295.00079 * 3 2 1 14 14 C 1.34770 * 120.00229 * 85.27134 * 13 3 2 15 15 O 1.21749 * 119.99918 * 359.72848 * 14 13 3 16 16 C 1.41823 * 120.00486 * 179.73049 * 14 13 3 17 17 C 1.35045 * 120.00435 * 186.67882 * 16 14 13 18 18 C 1.46963 * 119.99978 * 10.11238 * 17 16 14 19 19 C 1.41432 * 126.44240 * 46.42398 * 18 17 16 20 20 N 1.30438 * 108.04326 * 179.97438 * 19 18 17 21 21 N 1.39925 * 108.96129 * 0.02562 * 20 19 18 22 22 C 1.46505 * 125.74281 * 180.02562 * 21 20 19 23 23 C 1.34396 * 108.51898 * 359.74658 * 21 20 19 24 24 C 1.50697 * 126.32220 * 180.26843 * 23 21 20 25 25 H 1.09002 * 109.47576 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47347 * 300.00204 * 1 2 3 27 27 H 1.09001 * 109.47044 * 59.99730 * 1 2 3 28 28 H 1.08999 * 109.47347 * 239.99795 * 2 1 3 29 29 H 1.09001 * 109.47044 * 120.00270 * 2 1 3 30 30 H 0.97001 * 120.00230 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99714 * 265.00585 * 13 3 2 32 32 H 1.08000 * 119.99958 * 6.67441 * 16 14 13 33 33 H 1.08001 * 120.00305 * 190.11303 * 17 16 14 34 34 H 1.08005 * 125.98028 * 0.02562 * 19 18 17 35 35 H 1.08991 * 109.47236 * 89.97053 * 22 21 20 36 36 H 1.09001 * 109.47121 * 209.97616 * 22 21 20 37 37 H 1.09007 * 109.46581 * 329.97202 * 22 21 20 38 38 H 1.08999 * 109.47109 * 270.15012 * 24 23 21 39 39 H 1.08999 * 109.47448 * 30.15371 * 24 23 21 40 40 H 1.09007 * 109.47180 * 150.15323 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3372 2.1734 9 14 6.0050 0.8798 1.3813 10 1 6.5989 1.5440 0.1933 11 1 6.3999 1.6154 2.6093 12 1 6.4962 -0.5193 1.4628 13 7 1.6525 2.0975 -1.2517 14 6 0.4374 2.6693 -1.3650 15 8 -0.3402 2.6371 -0.4288 16 6 0.0644 3.3085 -2.5749 17 6 -1.0952 3.9969 -2.6452 18 6 -1.8608 4.2738 -1.4217 19 6 -1.3434 4.7620 -0.1993 20 7 -2.3339 4.8763 0.6418 21 7 -3.5155 4.4729 0.0101 22 6 -4.8480 4.4547 0.6188 23 6 -3.2234 4.1109 -1.2508 24 6 -4.2001 3.6163 -2.2864 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0613 2.9500 31 1 2.2720 2.1230 -1.9977 32 1 0.7078 3.2447 -3.4399 33 1 -1.4601 4.3441 -3.6006 34 1 -0.3092 4.9994 0.0023 35 1 -5.3370 5.4143 0.4516 36 1 -5.4427 3.6604 0.1677 37 1 -4.7556 4.2757 1.6901 38 1 -4.2809 2.5313 -2.2206 39 1 -5.1773 4.0649 -2.1079 40 1 -3.8484 3.8949 -3.2798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492625027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:02 Heat of formation + Delta-G solvation = 59.233290 kcal Electronic energy + Delta-G solvation = -21871.392932 eV Core-core repulsion = 18688.635890 eV Total energy + Delta-G solvation = -3182.757042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87184 -38.92844 -35.24309 -33.56301 -32.93615 -32.24742 -31.21962 -30.45897 -27.27749 -26.59029 -26.17310 -23.52025 -22.42770 -20.73020 -19.70364 -19.30366 -18.67290 -16.92123 -15.97891 -15.92008 -15.36890 -15.04250 -14.47262 -14.23598 -13.86517 -13.67507 -13.33717 -13.04489 -12.95340 -12.58590 -12.46932 -12.27675 -12.12390 -11.90336 -11.67992 -11.39505 -11.17966 -10.89048 -10.77701 -10.30985 -10.20843 -10.06658 -9.54592 -9.48670 -8.96735 -8.94858 -8.67381 -8.41630 -7.58244 -7.40744 -6.05490 -4.14318 1.47421 2.28530 2.79339 3.27482 3.35361 3.38100 3.44069 4.27275 4.33493 4.62297 4.69708 4.77241 5.02533 5.13387 5.25807 5.29859 5.38338 5.39384 5.49888 5.60550 5.73613 5.97817 6.14097 6.18542 6.47344 6.55832 6.63256 6.72643 6.79433 7.06777 7.14424 7.30174 7.32762 7.48496 7.62563 7.71865 7.87031 8.01770 8.13689 8.27714 8.84126 8.91269 9.36099 9.55126 10.99801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.004404 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.260942 B = 6356.982025 C = 6544.216783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.525 3.475 15 O -0.538 6.538 16 C -0.219 4.219 17 C 0.009 3.991 18 C -0.204 4.204 19 C 0.133 3.867 20 N -0.311 5.311 21 N -0.377 5.377 22 C 0.105 3.895 23 C 0.087 3.913 24 C -0.087 4.087 25 H 0.018 0.982 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.096 0.904 30 H 0.262 0.738 31 H 0.385 0.615 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.175 0.825 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.719 6.764 -10.268 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.355 5.355 14 C 0.314 3.686 15 O -0.419 6.419 16 C -0.241 4.241 17 C -0.013 4.013 18 C -0.216 4.216 19 C -0.054 4.054 20 N -0.131 5.131 21 N -0.159 5.159 22 C -0.037 4.037 23 C -0.040 4.040 24 C -0.145 4.145 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.217 0.783 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.192 0.808 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.718 6.949 -8.109 18.184 hybrid contribution 1.689 -0.487 -1.018 2.031 sum -13.029 6.462 -9.127 17.170 Atomic orbital electron populations 1.21801 0.98363 0.97599 1.01283 1.21907 0.92574 1.00011 1.01959 1.18694 0.93898 0.89074 0.81418 0.93416 1.21308 0.90978 1.38598 1.06101 0.92146 1.24886 0.98437 0.94940 0.95461 1.69917 1.34912 1.37869 1.09350 0.86438 0.85153 0.77693 0.78074 1.19763 1.20942 1.20967 1.46512 1.14847 1.55964 1.18197 1.17143 0.82833 0.80385 0.88244 1.90842 1.50490 1.60105 1.40447 1.22221 0.99478 1.02866 0.99499 1.21460 0.92399 0.92520 0.94918 1.18897 0.91000 1.15205 0.96494 1.23660 0.97701 0.94377 0.89698 1.77081 0.90445 1.24565 1.20990 1.47958 1.07386 1.52015 1.08545 1.21706 0.79387 1.02286 1.00286 1.21322 0.95004 1.00353 0.87344 1.20387 0.96278 1.01601 0.96258 0.96332 0.93371 0.94095 0.95280 0.88577 0.92748 0.78261 0.86124 0.86160 0.80826 0.91383 0.90098 0.89487 0.90318 0.91513 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.15 5.45 -26.74 -0.15 -3.29 16 3 C 0.27 6.94 2.24 -69.09 -0.15 6.78 16 4 H 0.05 1.42 7.57 -51.92 -0.39 1.03 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.71 -14.86 5.01 -57.78 -0.29 -15.15 16 14 C 0.53 10.40 5.77 -14.89 -0.09 10.32 16 15 O -0.54 -12.26 9.26 5.14 0.05 -12.21 16 16 C -0.22 -3.30 9.82 -39.35 -0.39 -3.69 16 17 C 0.01 0.12 9.76 -37.18 -0.36 -0.25 16 18 C -0.20 -3.29 4.51 -105.13 -0.47 -3.76 16 19 C 0.13 2.46 9.01 -16.93 -0.15 2.30 16 20 N -0.31 -5.82 12.49 30.89 0.39 -5.44 16 21 N -0.38 -5.72 3.98 -63.24 -0.25 -5.97 16 22 C 0.11 1.05 11.06 59.85 0.66 1.72 16 23 C 0.09 1.24 7.02 -81.45 -0.57 0.67 16 24 C -0.09 -0.81 9.71 36.00 0.35 -0.46 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.93 5.66 -51.93 -0.29 0.64 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.39 7.12 8.50 -40.82 -0.35 6.77 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.17 3.25 7.84 -52.48 -0.41 2.83 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.61 7.64 -51.93 -0.40 0.21 16 37 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.47 7.72 -51.93 -0.40 0.07 16 40 H 0.08 0.64 7.97 -51.93 -0.41 0.22 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -33.45 329.36 -6.81 -40.27 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.87 Total: 7.56 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.40 Total: -5.31 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.47 Total: -51.21 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.05 Total: -12.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.45 -6.81 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492625027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.499 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds