Wall clock time and date at job start Mon Mar 30 2020 02:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47463 * 2 1 4 4 H 1.09008 * 109.46966 * 54.99864 * 3 2 1 5 5 C 1.50703 * 109.47308 * 174.99482 * 3 2 1 6 6 H 1.08000 * 119.99665 * 119.99899 * 5 3 2 7 7 C 1.37870 * 120.00523 * 300.00565 * 5 3 2 8 8 N 1.31520 * 119.99835 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00429 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47029 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47283 * 119.99840 * 9 7 5 12 12 H 1.48501 * 109.47289 * 239.99970 * 9 7 5 13 13 N 1.46497 * 109.47549 * 295.00079 * 3 2 1 14 14 C 1.34770 * 120.00229 * 85.27134 * 13 3 2 15 15 O 1.21749 * 119.99918 * 359.72848 * 14 13 3 16 16 C 1.41823 * 120.00486 * 179.73049 * 14 13 3 17 17 C 1.35045 * 120.00435 * 186.67882 * 16 14 13 18 18 C 1.46963 * 119.99978 * 10.11238 * 17 16 14 19 19 C 1.41432 * 126.44240 * 46.42398 * 18 17 16 20 20 N 1.30438 * 108.04326 * 179.97438 * 19 18 17 21 21 N 1.39925 * 108.96129 * 0.02562 * 20 19 18 22 22 C 1.46505 * 125.74281 * 180.02562 * 21 20 19 23 23 C 1.34396 * 108.51898 * 359.74658 * 21 20 19 24 24 C 1.50697 * 126.32220 * 180.26843 * 23 21 20 25 25 H 1.09002 * 109.47576 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47347 * 300.00204 * 1 2 3 27 27 H 1.09001 * 109.47044 * 59.99730 * 1 2 3 28 28 H 1.08999 * 109.47347 * 239.99795 * 2 1 3 29 29 H 1.09001 * 109.47044 * 120.00270 * 2 1 3 30 30 H 0.97001 * 120.00230 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99714 * 265.00585 * 13 3 2 32 32 H 1.08000 * 119.99958 * 6.67441 * 16 14 13 33 33 H 1.08001 * 120.00305 * 190.11303 * 17 16 14 34 34 H 1.08005 * 125.98028 * 0.02562 * 19 18 17 35 35 H 1.08991 * 109.47236 * 89.97053 * 22 21 20 36 36 H 1.09001 * 109.47121 * 209.97616 * 22 21 20 37 37 H 1.09007 * 109.46581 * 329.97202 * 22 21 20 38 38 H 1.08999 * 109.47109 * 270.15012 * 24 23 21 39 39 H 1.08999 * 109.47448 * 30.15371 * 24 23 21 40 40 H 1.09007 * 109.47180 * 150.15323 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3372 2.1734 9 14 6.0050 0.8798 1.3813 10 1 6.5989 1.5440 0.1933 11 1 6.3999 1.6154 2.6093 12 1 6.4962 -0.5193 1.4628 13 7 1.6525 2.0975 -1.2517 14 6 0.4374 2.6693 -1.3650 15 8 -0.3402 2.6371 -0.4288 16 6 0.0644 3.3085 -2.5749 17 6 -1.0952 3.9969 -2.6452 18 6 -1.8608 4.2738 -1.4217 19 6 -1.3434 4.7620 -0.1993 20 7 -2.3339 4.8763 0.6418 21 7 -3.5155 4.4729 0.0101 22 6 -4.8480 4.4547 0.6188 23 6 -3.2234 4.1109 -1.2508 24 6 -4.2001 3.6163 -2.2864 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0613 2.9500 31 1 2.2720 2.1230 -1.9977 32 1 0.7078 3.2447 -3.4399 33 1 -1.4601 4.3441 -3.6006 34 1 -0.3092 4.9994 0.0023 35 1 -5.3370 5.4143 0.4516 36 1 -5.4427 3.6604 0.1677 37 1 -4.7556 4.2757 1.6901 38 1 -4.2809 2.5313 -2.2206 39 1 -5.1773 4.0649 -2.1079 40 1 -3.8484 3.8949 -3.2798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492625027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:01 Heat of formation + Delta-G solvation = 36.069456 kcal Electronic energy + Delta-G solvation = -21872.397392 eV Core-core repulsion = 18688.635890 eV Total energy + Delta-G solvation = -3183.761502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06107 -40.50509 -37.04281 -34.83583 -34.20242 -34.01477 -32.84679 -31.75145 -29.08951 -27.62694 -27.37303 -25.27200 -24.04585 -22.18788 -21.27593 -20.74332 -20.13231 -18.51264 -17.58807 -17.28138 -16.77604 -16.46586 -16.08818 -15.85779 -15.13373 -15.02273 -14.68479 -14.38626 -14.09916 -13.79204 -13.72085 -13.50528 -13.38385 -13.26808 -13.15753 -13.03645 -12.81010 -12.68921 -12.64199 -12.12978 -12.00667 -11.59675 -11.49584 -11.00176 -10.73307 -10.55193 -10.27524 -10.02776 -9.35500 -8.61222 -8.14458 -6.31618 0.32347 1.10292 1.43099 1.44047 1.56225 1.78663 2.16634 2.39477 2.83653 3.03203 3.15727 3.72874 3.85996 4.16942 4.35200 4.41691 4.42047 4.49352 4.50904 4.58270 4.63748 4.70345 4.78835 4.82375 4.96595 5.08775 5.09991 5.13579 5.26618 5.47226 5.48947 5.57522 5.65455 5.76932 5.79995 5.85894 6.07120 6.22336 6.31545 6.79439 6.89151 7.24262 7.37170 7.85818 8.91007 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027145 B = 0.004404 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.260942 B = 6356.982025 C = 6544.216783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.283 3.717 4 H -0.009 1.009 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.710 5.710 14 C 0.521 3.479 15 O -0.574 6.574 16 C -0.242 4.242 17 C 0.039 3.961 18 C -0.238 4.238 19 C 0.110 3.890 20 N -0.359 5.359 21 N -0.380 5.380 22 C 0.093 3.907 23 C 0.098 3.902 24 C -0.085 4.085 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.263 0.737 31 H 0.399 0.601 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 6.915 -13.386 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.179 3.821 4 H 0.009 0.991 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.359 5.359 14 C 0.312 3.688 15 O -0.457 6.457 16 C -0.263 4.263 17 C 0.018 3.982 18 C -0.249 4.249 19 C -0.076 4.076 20 N -0.179 5.179 21 N -0.162 5.162 22 C -0.047 4.047 23 C -0.031 4.031 24 C -0.143 4.143 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.233 0.767 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.883 7.120 -11.259 20.730 hybrid contribution 1.860 -0.465 0.023 1.917 sum -14.024 6.655 -11.235 19.162 Atomic orbital electron populations 1.21587 0.97037 0.98510 1.00005 1.21749 0.93633 0.99503 1.00853 1.18192 0.93207 0.88885 0.81825 0.99110 1.21666 0.91766 1.38429 1.06488 0.91175 1.25791 1.03304 0.94489 0.95062 1.70081 1.36952 1.38711 1.09922 0.85337 0.79231 0.77820 0.78186 1.18326 1.21143 1.20402 1.46288 1.16019 1.56538 1.17051 1.17937 0.81722 0.79628 0.89471 1.90844 1.51372 1.61245 1.42230 1.22174 1.01249 1.04565 0.98274 1.21952 0.90712 0.89704 0.95809 1.19292 0.92314 1.16527 0.96753 1.23521 0.96972 0.95728 0.91380 1.76947 0.92086 1.26452 1.22452 1.48388 1.07769 1.50915 1.09123 1.22119 0.77579 1.04938 1.00036 1.22152 0.95319 0.97981 0.87640 1.20612 0.96367 1.01762 0.95575 0.94130 0.96430 0.93459 0.94241 0.91530 0.92791 0.76652 0.82535 0.81041 0.83157 0.88835 0.86981 0.90298 0.89896 0.88670 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 8.52 71.98 0.61 -4.82 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.94 16 3 C 0.28 15.08 2.24 44.24 0.10 15.18 16 4 H -0.01 -0.58 7.57 -2.38 -0.02 -0.59 16 5 C -0.55 -29.86 8.73 25.60 0.22 -29.64 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.73 5.29 84.65 0.45 1.17 16 8 N -0.92 -54.55 11.29 21.45 0.24 -54.31 16 9 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 N -0.71 -30.28 5.01 -454.91 -2.28 -32.56 16 14 C 0.52 20.86 5.77 85.13 0.49 21.35 16 15 O -0.57 -27.26 9.26 -4.51 -0.04 -27.30 16 16 C -0.24 -6.79 9.82 22.42 0.22 -6.57 16 17 C 0.04 0.95 9.76 23.82 0.23 1.18 16 18 C -0.24 -7.41 4.51 -20.19 -0.09 -7.50 16 19 C 0.11 4.28 9.01 85.69 0.77 5.05 16 20 N -0.36 -14.01 12.49 -56.18 -0.70 -14.71 16 21 N -0.38 -11.22 3.98 -353.99 -1.41 -12.63 16 22 C 0.09 1.69 11.06 127.77 1.41 3.11 16 23 C 0.10 2.58 7.02 42.18 0.30 2.88 16 24 C -0.09 -1.20 9.71 71.23 0.69 -0.50 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.02 0.89 7.85 -2.39 -0.02 0.88 16 27 H 0.05 2.16 5.66 -2.39 -0.01 2.15 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 30 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.40 14.56 8.50 -92.71 -0.79 13.77 16 32 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.15 6.24 7.84 -2.91 -0.02 6.22 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.33 7.64 -2.39 -0.02 1.31 16 37 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 0.83 7.72 -2.39 -0.02 0.81 16 40 H 0.11 1.04 7.97 -2.38 -0.02 1.02 16 Total: -1.00 -78.55 329.36 3.67 -74.88 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.25 Total: 26.24 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.58 Total: -5.05 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.15 Total: -114.21 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.04 Total: -27.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -78.55 3.67 -74.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492625027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.953 kcal (2) G-P(sol) polarization free energy of solvation -78.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds