Wall clock time and date at job start Mon Mar 30 2020 01:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40036 * 126.15372 * 2 1 4 4 C 1.30992 * 108.86075 * 179.97438 * 3 2 1 5 5 C 1.39173 * 108.83103 * 0.02562 * 4 3 2 6 6 C 1.36806 * 126.15029 * 179.69289 * 2 1 3 7 7 C 1.46425 * 126.51675 * 0.02562 * 6 2 1 8 8 C 1.35253 * 120.00013 * 185.07748 * 7 6 2 9 9 C 1.46148 * 119.99844 * 185.22161 * 8 7 6 10 10 O 1.21734 * 120.00258 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99770 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00006 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47271 * 180.02562 * 12 11 9 14 14 C 1.53011 * 109.46839 * 300.00006 * 13 12 11 15 15 C 1.53003 * 109.47409 * 59.99410 * 13 12 11 16 16 C 1.50692 * 109.47323 * 180.02562 * 13 12 11 17 17 H 1.07999 * 119.99929 * 355.35537 * 16 13 12 18 18 C 1.37881 * 120.00483 * 175.35659 * 16 13 12 19 19 N 1.31509 * 120.00497 * 201.80003 * 18 16 13 20 20 Si 1.86802 * 119.99496 * 21.80259 * 18 16 13 21 21 H 1.48494 * 109.47250 * 84.48615 * 20 18 16 22 22 H 1.48500 * 109.46934 * 204.48647 * 20 18 16 23 23 H 1.48495 * 109.47274 * 324.48339 * 20 18 16 24 24 H 1.09005 * 109.47067 * 85.43163 * 1 2 3 25 25 H 1.08998 * 109.47555 * 205.43279 * 1 2 3 26 26 H 1.09000 * 109.47017 * 325.43624 * 1 2 3 27 27 H 1.08003 * 125.58129 * 180.02562 * 4 3 2 28 28 H 1.07992 * 126.17936 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.99906 * 5.07464 * 7 6 2 30 30 H 1.07996 * 119.99899 * 5.22699 * 8 7 6 31 31 H 0.97001 * 120.00418 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.46635 * 300.00288 * 12 11 9 33 33 H 1.08996 * 109.46887 * 60.00178 * 12 11 9 34 34 H 1.08990 * 109.47294 * 72.40018 * 14 13 12 35 35 H 1.08998 * 109.46855 * 192.39892 * 14 13 12 36 36 H 1.08998 * 109.46890 * 312.39416 * 14 13 12 37 37 H 1.09000 * 109.46450 * 60.00578 * 15 13 12 38 38 H 1.08997 * 109.47079 * 180.02562 * 15 13 12 39 39 H 1.08993 * 109.47404 * 300.00631 * 15 13 12 40 40 H 0.96996 * 120.00163 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2912 1.1307 0.0000 4 6 3.5419 0.7413 0.0006 5 6 3.5792 -0.6499 0.0003 6 6 2.2721 -1.1047 0.0059 7 6 1.8358 -2.5024 0.0129 8 6 2.7481 -3.4950 0.1219 9 6 2.3262 -4.8901 0.0144 10 8 1.1539 -5.1588 -0.1738 11 7 3.2353 -5.8792 0.1225 12 6 2.8126 -7.2778 0.0142 13 6 4.0291 -8.1920 0.1723 14 6 5.0475 -7.8804 -0.9263 15 6 4.6690 -7.9572 1.5422 16 6 3.5944 -9.6305 0.0603 17 1 2.5459 -9.8722 -0.0318 18 6 4.5353 -10.6383 0.0753 19 7 4.2468 -11.8150 -0.4361 20 14 6.2199 -10.3321 0.8222 21 1 6.1572 -10.5479 2.2901 22 1 7.2039 -11.2706 0.2255 23 1 6.6378 -8.9344 0.5448 24 1 -0.3633 0.0819 -1.0245 25 1 -0.3634 -0.9280 0.4413 26 1 -0.3633 0.8463 0.5830 27 1 4.4030 1.3932 0.0011 28 1 4.4677 -1.2638 0.0011 29 1 0.7857 -2.7407 -0.0690 30 1 3.7881 -3.2566 0.2886 31 1 4.1695 -5.6652 0.2721 32 1 2.0874 -7.4998 0.7971 33 1 2.3565 -7.4449 -0.9616 34 1 5.5242 -6.9225 -0.7187 35 1 5.8041 -8.6645 -0.9533 36 1 4.5395 -7.8324 -1.8895 37 1 3.9435 -8.1793 2.3248 38 1 5.5359 -8.6082 1.6546 39 1 4.9834 -6.9168 1.6228 40 1 4.9089 -12.5238 -0.4259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493569867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:27 Heat of formation + Delta-G solvation = 43.597555 kcal Electronic energy + Delta-G solvation = -20748.757132 eV Core-core repulsion = 17565.322073 eV Total energy + Delta-G solvation = -3183.435059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95611 -40.77646 -38.40702 -35.05917 -34.97443 -34.10075 -33.40028 -30.25731 -27.95648 -27.80328 -27.61904 -26.97283 -24.61884 -22.25462 -21.40166 -20.94591 -19.90326 -18.72401 -18.02249 -17.45333 -16.84700 -16.63447 -16.42846 -16.22250 -15.56392 -15.05901 -14.89632 -14.83608 -14.61585 -14.31402 -14.17473 -13.93352 -13.64930 -13.62812 -13.28741 -12.91110 -12.81334 -12.39681 -12.13123 -11.99973 -11.75790 -11.72536 -11.63270 -11.17284 -10.98645 -10.52768 -10.35807 -10.09247 -9.90497 -9.26241 -8.31574 -6.27411 -0.39389 1.22973 1.38805 1.41563 1.48839 1.52625 1.89026 2.33283 2.37239 2.42271 3.04138 3.50712 3.63941 3.91979 4.08815 4.16879 4.29294 4.36321 4.36790 4.46988 4.57805 4.63258 4.74308 4.81839 4.87852 4.88325 4.89858 4.98065 5.11790 5.16565 5.21265 5.30177 5.46327 5.58668 5.69233 5.74758 5.84675 5.94452 6.32781 6.65179 6.67503 6.75671 7.29686 7.35178 8.85714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.003131 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.656151 B = 8940.824668 C = 9435.625854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.376 5.376 3 N -0.321 5.321 4 C 0.039 3.961 5 C -0.243 4.243 6 C 0.082 3.918 7 C -0.018 4.018 8 C -0.162 4.162 9 C 0.535 3.465 10 O -0.596 6.596 11 N -0.701 5.701 12 C 0.156 3.844 13 C 0.030 3.970 14 C -0.138 4.138 15 C -0.150 4.150 16 C -0.528 4.528 17 H 0.026 0.974 18 C 0.022 3.978 19 N -0.939 5.939 20 Si 0.936 3.064 21 H -0.282 1.282 22 H -0.313 1.313 23 H -0.200 1.200 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.215 0.785 28 H 0.179 0.821 29 H 0.132 0.868 30 H 0.170 0.830 31 H 0.415 0.585 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 25.278 2.560 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.160 5.160 3 N -0.144 5.144 4 C -0.144 4.144 5 C -0.272 4.272 6 C -0.044 4.044 7 C -0.040 4.040 8 C -0.185 4.185 9 C 0.325 3.675 10 O -0.479 6.479 11 N -0.352 5.352 12 C 0.032 3.968 13 C 0.029 3.971 14 C -0.195 4.195 15 C -0.206 4.206 16 C -0.565 4.565 17 H 0.044 0.956 18 C -0.176 4.176 19 N -0.578 5.578 20 Si 0.764 3.236 21 H -0.209 1.209 22 H -0.242 1.242 23 H -0.123 1.123 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.232 0.768 28 H 0.196 0.804 29 H 0.150 0.850 30 H 0.187 0.813 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.246 25.941 2.381 26.051 hybrid contribution 0.970 -1.598 0.236 1.884 sum 1.216 24.343 2.617 24.513 Atomic orbital electron populations 1.22185 0.72559 1.05729 1.04724 1.49254 1.07613 1.02861 1.56315 1.77272 1.03167 1.08801 1.25205 1.24264 0.95298 0.95832 0.98989 1.22317 0.96204 0.95320 1.13330 1.20254 0.91655 0.87922 1.04595 1.21373 1.00411 0.87855 0.94321 1.22930 1.02281 0.89563 1.03696 1.18743 0.85149 0.87086 0.76513 1.90803 1.19664 1.85668 1.51770 1.45928 1.11930 1.05807 1.71492 1.21062 0.96984 0.79258 0.99501 1.18624 0.92360 0.92563 0.93601 1.22175 0.98516 1.00378 0.98473 1.22357 0.99721 1.00798 0.97770 1.20996 0.93302 0.90906 1.51343 0.95601 1.25825 1.02918 0.94594 0.94278 1.70186 1.37913 1.05998 1.43666 0.86484 0.79132 0.79900 0.78125 1.20925 1.24238 1.12287 0.89514 0.88006 0.88230 0.76813 0.80377 0.85000 0.81274 0.74667 0.93837 0.94162 0.91113 0.94124 0.94215 0.93621 0.94304 0.90681 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.35 127.77 1.45 2.56 16 2 N -0.38 -7.33 4.07 -356.60 -1.45 -8.78 16 3 N -0.32 -6.80 12.54 -57.40 -0.72 -7.52 16 4 C 0.04 0.62 11.96 85.04 1.02 1.64 16 5 C -0.24 -3.82 10.20 22.53 0.23 -3.59 16 6 C 0.08 1.55 6.91 40.54 0.28 1.83 16 7 C -0.02 -0.35 9.25 23.71 0.22 -0.13 16 8 C -0.16 -3.14 9.53 23.64 0.23 -2.91 16 9 C 0.54 15.52 7.73 86.30 0.67 16.19 16 10 O -0.60 -22.77 16.24 -4.46 -0.07 -22.84 16 11 N -0.70 -19.98 5.00 -467.59 -2.34 -22.32 16 12 C 0.16 6.03 4.47 86.38 0.39 6.42 16 13 C 0.03 1.22 0.50 -52.93 -0.03 1.19 16 14 C -0.14 -5.06 7.47 71.99 0.54 -4.52 16 15 C -0.15 -5.30 7.57 71.98 0.54 -4.76 16 16 C -0.53 -28.72 8.60 25.60 0.22 -28.50 16 17 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 18 C 0.02 1.24 5.16 84.66 0.44 1.68 16 19 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 20 Si 0.94 41.45 23.05 68.60 1.58 43.03 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.20 -7.32 4.70 99.48 0.47 -6.86 16 24 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.10 1.03 7.30 -2.39 -0.02 1.02 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.18 1.76 7.33 -2.91 -0.02 1.73 16 29 H 0.13 2.74 6.94 -2.91 -0.02 2.72 16 30 H 0.17 1.99 6.97 -2.91 -0.02 1.97 16 31 H 0.42 8.91 6.29 -92.71 -0.58 8.32 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.92 7.19 -2.39 -0.02 1.90 16 35 H 0.04 1.59 4.34 -2.39 -0.01 1.58 16 36 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.44 2.49 -2.39 -0.01 1.43 16 39 H 0.07 1.97 6.86 -2.39 -0.02 1.95 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -75.48 323.32 3.72 -71.76 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.24 Total: 16.93 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 6.19 Total: -12.90 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.21 Total: -95.98 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.58 Total: 43.03 kcal Total: -75.48 3.72 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493569867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.356 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds