Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46897 * 2 1 4 4 N 1.46495 * 109.47367 * 120.00265 * 2 1 3 5 5 C 1.46501 * 120.00016 * 304.24425 * 4 2 1 6 6 C 1.50699 * 109.46979 * 270.00187 * 5 4 2 7 7 H 1.07991 * 120.00336 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99555 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00444 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99616 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46849 * 60.00105 * 10 8 6 12 12 H 1.48493 * 109.46803 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47205 * 300.00064 * 10 8 6 14 14 C 1.34775 * 119.99983 * 124.24069 * 4 2 1 15 15 O 1.21287 * 119.99717 * 185.39774 * 14 4 2 16 16 C 1.50694 * 120.00265 * 5.40134 * 14 4 2 17 17 C 1.52998 * 109.47497 * 174.86553 * 16 14 4 18 18 C 1.50694 * 109.47178 * 180.02562 * 17 16 14 19 19 C 1.38391 * 120.00154 * 125.00134 * 18 17 16 20 20 N 1.32130 * 119.99745 * 179.97438 * 19 18 17 21 21 C 1.32155 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.38346 * 120.00174 * 0.02562 * 21 20 19 23 23 N 1.32121 * 120.00209 * 304.71796 * 18 17 16 24 24 H 1.08991 * 109.47012 * 295.63852 * 1 2 3 25 25 H 1.08993 * 109.47346 * 55.64499 * 1 2 3 26 26 H 1.09005 * 109.46602 * 175.63694 * 1 2 3 27 27 H 1.09004 * 109.46976 * 240.00593 * 2 1 3 28 28 H 1.09003 * 109.47299 * 184.58297 * 3 2 1 29 29 H 1.09003 * 109.47557 * 304.58650 * 3 2 1 30 30 H 1.09005 * 109.46981 * 64.58305 * 3 2 1 31 31 H 1.09001 * 109.46975 * 29.99972 * 5 4 2 32 32 H 1.09003 * 109.47531 * 149.99989 * 5 4 2 33 33 H 0.96995 * 120.00072 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.46996 * 294.86820 * 16 14 4 35 35 H 1.09004 * 109.46937 * 54.86206 * 16 14 4 36 36 H 1.09004 * 109.46891 * 299.99676 * 17 16 14 37 37 H 1.08996 * 109.47033 * 59.99879 * 17 16 14 38 38 H 1.07998 * 120.00329 * 359.95389 * 19 18 17 39 39 H 1.08002 * 119.99825 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.99518 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5895 -0.2467 2.5247 6 6 2.5498 0.7937 3.0409 7 1 3.3952 1.0939 2.4398 8 6 2.3489 1.3623 4.2809 9 7 1.3197 0.9964 5.0132 10 14 3.5396 2.6515 4.9211 11 1 3.5594 3.8110 3.9936 12 1 3.1041 3.1024 6.2672 13 1 4.9014 2.0663 5.0111 14 6 2.8623 -1.7344 1.0742 15 8 3.1894 -2.3675 2.0556 16 6 3.3993 -2.1149 -0.2814 17 6 4.4246 -3.2399 -0.1265 18 6 4.9620 -3.6200 -1.4821 19 6 6.3261 -3.6040 -1.7150 20 7 6.7973 -3.9377 -2.9035 21 6 5.9660 -4.2872 -3.8696 22 6 4.6023 -4.3031 -3.6367 23 7 4.1313 -3.9738 -2.4467 24 1 -0.3633 0.4446 0.9264 25 1 -0.3633 0.5799 -0.8483 26 1 -0.3633 -1.0248 -0.0782 27 1 1.8934 -0.5138 -0.8901 28 1 3.1269 1.4436 -0.0821 29 1 1.6111 1.9795 -0.8460 30 1 1.7452 1.9320 0.9282 31 1 0.5897 0.1823 2.4592 32 1 1.5757 -1.0980 3.2054 33 1 1.1782 1.3967 5.8853 34 1 2.5798 -2.4549 -0.9145 35 1 3.8768 -1.2486 -0.7393 36 1 5.2442 -2.8999 0.5066 37 1 3.9470 -4.1062 0.3313 38 1 7.0055 -3.3185 -0.9255 39 1 6.3512 -4.5603 -4.8409 40 1 3.9231 -4.5883 -4.4264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527531174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = 0.801550 kcal Electronic energy + Delta-G solvation = -21382.938868 eV Core-core repulsion = 18197.648035 eV Total energy + Delta-G solvation = -3185.290833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23773 -39.20335 -36.06256 -34.92034 -33.56090 -32.78951 -30.81456 -30.49979 -27.58969 -26.74052 -25.52863 -24.62503 -22.99740 -21.83267 -21.02071 -18.02589 -17.60553 -17.18716 -16.80132 -16.44099 -15.66265 -15.37695 -14.94150 -14.74957 -14.22675 -13.81677 -13.48466 -13.37823 -13.07426 -12.40060 -12.36618 -12.27711 -11.97138 -11.74305 -11.65269 -11.45326 -11.38776 -11.13558 -10.99624 -10.87031 -10.81633 -10.54535 -10.32913 -9.98754 -9.54377 -9.39322 -9.21074 -8.83449 -8.40299 -7.60826 -6.02123 -4.05718 0.59799 0.96473 3.31877 3.36821 3.37874 3.46590 3.51777 3.83342 3.98872 4.10524 4.32438 4.45729 4.63219 4.94722 5.00363 5.21459 5.25452 5.30020 5.31564 5.39112 5.44355 5.60374 5.70146 5.77045 6.05249 6.07604 6.11975 6.19324 6.27736 6.29988 6.36863 6.62458 6.98066 7.10140 7.15579 7.51295 7.60661 7.61790 7.95074 8.27550 8.48757 8.92975 9.12955 9.58414 11.05883 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.004139 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.135659 B = 6763.580537 C = 7262.361011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.593 5.593 5 C 0.244 3.756 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.507 3.493 15 O -0.546 6.546 16 C -0.131 4.131 17 C -0.052 4.052 18 C 0.093 3.907 19 C 0.052 3.948 20 N -0.438 5.438 21 C 0.033 3.967 22 C 0.053 3.947 23 N -0.436 5.436 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -6.551 -17.862 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.325 5.325 5 C 0.125 3.875 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.294 3.706 15 O -0.424 6.424 16 C -0.172 4.172 17 C -0.091 4.091 18 C -0.047 4.047 19 C -0.108 4.108 20 N -0.152 5.152 21 C -0.126 4.126 22 C -0.107 4.107 23 N -0.152 5.152 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.188 0.812 39 H 0.184 0.816 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.053 -6.842 -17.147 18.901 hybrid contribution 0.619 0.840 0.229 1.069 sum 4.672 -6.002 -16.918 18.550 Atomic orbital electron populations 1.22152 0.95482 1.01641 1.02736 1.20976 0.94238 0.93919 0.87951 1.22201 1.00710 0.96002 1.03030 1.48297 1.45357 1.30141 1.08670 1.19253 0.95301 0.95632 0.77330 1.21418 1.10856 1.21711 1.02047 0.92422 1.24926 0.95533 0.97132 0.96510 1.69918 1.28558 1.43121 1.11801 0.86619 0.81523 0.81642 0.77990 1.20303 1.21251 1.20244 1.20259 0.79576 0.80681 0.90124 1.90661 1.59147 1.52559 1.40049 1.21593 0.99659 0.98819 0.97115 1.20304 0.99717 0.99648 0.89441 1.22478 0.91479 0.94251 0.96540 1.23714 0.94780 0.97036 0.95298 1.68447 1.39072 1.07161 1.00526 1.23726 0.91669 0.97797 0.99407 1.23791 0.95359 0.96328 0.95180 1.68301 1.38972 1.07661 1.00237 0.91055 0.92312 0.92931 0.90794 0.93153 0.93277 0.89646 0.94739 0.93952 0.92735 0.88679 0.89850 0.88950 0.88561 0.81209 0.81601 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.19 37.16 0.34 -2.09 16 2 C 0.13 2.19 3.12 -67.93 -0.21 1.98 16 3 C -0.16 -2.65 8.74 37.16 0.32 -2.33 16 4 N -0.59 -12.32 2.39 -167.47 -0.40 -12.72 16 5 C 0.24 6.24 4.73 -5.19 -0.02 6.22 16 6 C -0.52 -14.34 7.71 -34.44 -0.27 -14.60 16 7 H 0.06 1.58 7.59 -52.49 -0.40 1.18 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 C 0.51 10.30 7.65 -10.99 -0.08 10.21 16 15 O -0.55 -13.30 15.54 5.55 0.09 -13.22 16 16 C -0.13 -1.94 3.89 -27.89 -0.11 -2.05 16 17 C -0.05 -0.71 4.93 -27.89 -0.14 -0.84 16 18 C 0.09 1.12 6.17 -82.41 -0.51 0.61 16 19 C 0.05 0.58 10.85 -17.37 -0.19 0.39 16 20 N -0.44 -4.95 10.50 -13.05 -0.14 -5.09 16 21 C 0.03 0.30 11.22 -17.37 -0.20 0.10 16 22 C 0.05 0.48 11.22 -17.37 -0.20 0.29 16 23 N -0.44 -5.22 10.06 -9.29 -0.09 -5.32 16 24 H 0.07 1.23 6.34 -51.93 -0.33 0.90 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.03 5.85 -51.93 -0.30 0.72 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.68 6.60 -51.93 -0.34 1.34 16 31 H 0.03 0.90 6.13 -51.93 -0.32 0.58 16 32 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.09 1.31 7.55 -51.93 -0.39 0.92 16 35 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 36 H 0.09 1.22 7.88 -51.93 -0.41 0.81 16 37 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.17 1.56 7.95 -52.49 -0.42 1.14 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 333.69 15.07 5.03 5.03 Total: -1.00 -33.33 333.69 -6.94 -40.28 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.79 Total: 0.53 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.35 Total: -0.49 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.11 Total: -48.71 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.33 -6.94 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527531174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.077 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds