Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47323 * 2 1 4 4 H 1.09006 * 109.47297 * 57.71395 * 3 2 1 5 5 C 1.50699 * 109.47672 * 177.71106 * 3 2 1 6 6 O 1.21274 * 120.00156 * 105.71071 * 5 3 2 7 7 N 1.34781 * 119.99906 * 285.71785 * 5 3 2 8 8 C 1.39478 * 119.99941 * 184.65692 * 7 5 3 9 9 C 1.38594 * 119.57733 * 184.57772 * 8 7 5 10 10 C 1.40807 * 118.79346 * 179.77760 * 9 8 7 11 11 C 1.41545 * 120.99773 * 180.26285 * 10 9 8 12 12 H 1.07997 * 119.99896 * 203.38444 * 11 10 9 13 13 C 1.40024 * 119.99875 * 23.38037 * 11 10 9 14 14 N 1.30743 * 120.00339 * 13.91445 * 13 11 10 15 15 Si 1.86804 * 119.99885 * 193.91305 * 13 11 10 16 16 H 1.48505 * 109.47053 * 94.98281 * 15 13 11 17 17 H 1.48504 * 109.47173 * 214.98284 * 15 13 11 18 18 H 1.48496 * 109.47309 * 334.98477 * 15 13 11 19 19 C 1.41180 * 118.00482 * 0.48241 * 10 9 8 20 20 C 1.37584 * 119.01583 * 359.75809 * 19 10 9 21 21 N 1.32079 * 121.10948 * 359.97438 * 20 19 10 22 22 N 1.46903 * 109.47323 * 297.71137 * 3 2 1 23 23 C 1.46900 * 111.00139 * 181.09650 * 22 3 2 24 24 C 1.46894 * 110.99972 * 305.05316 * 22 3 2 25 25 H 1.08997 * 109.47200 * 305.15139 * 1 2 3 26 26 H 1.08997 * 109.47006 * 65.15694 * 1 2 3 27 27 H 1.09005 * 109.46746 * 185.15501 * 1 2 3 28 28 H 1.09000 * 109.47196 * 239.99983 * 2 1 3 29 29 H 1.09004 * 109.47059 * 120.00061 * 2 1 3 30 30 H 0.96997 * 119.99812 * 4.65516 * 7 5 3 31 31 H 1.07995 * 120.60313 * 0.02562 * 9 8 7 32 32 H 0.96995 * 120.00140 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.48923 * 179.77743 * 19 10 9 34 34 H 1.08003 * 119.44460 * 180.02562 * 20 19 10 35 35 H 1.09003 * 109.46884 * 183.95358 * 23 22 3 36 36 H 1.08998 * 109.47230 * 63.95981 * 23 22 3 37 37 H 1.08999 * 109.47278 * 303.95367 * 23 22 3 38 38 H 1.08996 * 109.47158 * 292.16195 * 24 22 3 39 39 H 1.09006 * 109.47210 * 52.15324 * 24 22 3 40 40 H 1.08994 * 109.47537 * 172.15421 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6436 1.9680 0.8688 5 6 3.5459 1.4429 0.0567 6 8 4.1900 1.7140 -0.9344 7 7 4.1770 1.1419 1.2090 8 6 5.5663 1.2365 1.2886 9 6 6.2142 0.8344 2.4460 10 6 7.6175 0.9327 2.5067 11 6 8.3270 0.5302 3.6634 12 1 9.3073 0.9366 3.8643 13 6 7.7580 -0.3948 4.5473 14 7 6.7116 -1.0889 4.1830 15 14 8.4940 -0.6372 6.2470 16 1 7.7681 0.2110 7.2263 17 1 8.3710 -2.0638 6.6409 18 1 9.9278 -0.2516 6.2252 19 6 8.2952 1.4492 1.3810 20 6 7.5650 1.8276 0.2780 21 7 6.2492 1.7142 0.2590 22 7 1.5961 2.1188 -1.2261 23 6 2.0902 3.5014 -1.2731 24 6 2.0114 1.3705 -2.4200 25 1 -0.3633 0.5916 0.8402 26 1 -0.3633 0.4317 -0.9325 27 1 -0.3633 -1.0236 0.0923 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.6650 0.8594 1.9829 31 1 5.6532 0.4489 3.2844 32 1 6.3177 -1.7299 4.7951 33 1 9.3709 1.5455 1.3855 34 1 8.0763 2.2232 -0.5871 35 1 1.6897 4.0006 -2.1554 36 1 3.1791 3.4966 -1.3214 37 1 1.7685 4.0329 -0.3775 38 1 3.0966 1.4093 -2.5139 39 1 1.6917 0.3324 -2.3276 40 1 1.5540 1.8141 -3.3043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532500122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -8.755343 kcal Electronic energy + Delta-G solvation = -21820.967595 eV Core-core repulsion = 18635.262344 eV Total energy + Delta-G solvation = -3185.705251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70020 -40.08437 -37.75473 -36.12178 -35.60574 -33.83049 -32.47191 -30.71562 -28.64123 -28.21204 -27.91771 -24.41445 -23.90300 -23.57316 -22.06406 -20.80940 -19.49729 -18.55574 -17.73113 -17.12306 -16.73729 -16.37069 -16.13091 -16.00607 -15.68648 -15.45968 -14.99532 -14.54134 -14.39311 -14.26747 -14.02047 -13.28337 -13.19082 -13.01683 -12.92345 -12.79807 -12.69479 -12.59919 -12.45289 -12.09332 -11.90477 -11.87914 -11.61263 -11.45424 -11.23084 -11.16715 -9.97533 -9.84332 -9.09461 -8.86646 -8.63753 -6.59911 0.70886 0.97691 1.40423 1.53014 1.53907 1.82985 2.14221 2.19082 2.79285 2.92499 3.58360 3.72015 3.87493 4.05107 4.17114 4.24536 4.49526 4.61041 4.63891 4.68496 4.72686 4.78628 4.82408 4.90111 4.96009 5.03102 5.07463 5.14629 5.19688 5.21867 5.26841 5.46425 5.53645 5.64770 5.83237 5.90969 5.95341 6.13544 6.45514 6.59171 6.77360 6.81172 7.29000 7.81378 8.24897 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.004579 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.753831 B = 6113.184604 C = 6961.908319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C 0.073 3.927 4 H 0.125 0.875 5 C 0.469 3.531 6 O -0.516 6.516 7 N -0.651 5.651 8 C 0.332 3.668 9 C -0.263 4.263 10 C 0.112 3.888 11 C -0.483 4.483 12 H 0.083 0.917 13 C 0.039 3.961 14 N -0.813 5.813 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.259 1.259 19 C -0.300 4.300 20 C 0.112 3.888 21 N -0.578 5.578 22 N -0.503 5.503 23 C 0.012 3.988 24 C 0.002 3.998 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.420 0.580 31 H 0.129 0.871 32 H 0.293 0.707 33 H 0.114 0.886 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 1.123 -1.705 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.040 4.040 4 H 0.143 0.857 5 C 0.255 3.745 6 O -0.389 6.389 7 N -0.299 5.299 8 C 0.106 3.894 9 C -0.288 4.288 10 C 0.104 3.896 11 C -0.514 4.514 12 H 0.101 0.899 13 C -0.178 4.178 14 N -0.438 5.438 15 Si 0.809 3.191 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.324 4.324 20 C -0.042 4.042 21 N -0.298 5.298 22 N -0.224 5.224 23 C -0.136 4.136 24 C -0.145 4.145 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.258 0.742 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.797 1.439 -3.168 13.262 hybrid contribution 1.915 -0.555 1.619 2.569 sum -10.882 0.884 -1.548 11.027 Atomic orbital electron populations 1.21580 0.92219 1.02035 1.03010 1.21632 0.98964 0.91829 1.02797 1.22164 0.85978 0.99171 0.96674 0.85740 1.22989 0.92746 0.76275 0.82487 1.90672 1.68622 1.45395 1.34177 1.43748 1.04095 1.66333 1.15734 1.18514 0.84731 0.94956 0.91165 1.21661 0.95345 1.13268 0.98536 1.18021 0.91879 0.87435 0.92285 1.19906 1.03839 1.22380 1.05237 0.89893 1.26830 0.94475 0.92834 1.03653 1.69788 1.19477 1.17184 1.37380 0.85078 0.79611 0.78564 0.75809 1.18387 1.19068 1.18302 1.22067 0.99766 1.14627 0.95913 1.22175 0.89076 0.95946 0.97004 1.67317 1.09185 1.24191 1.29109 1.62640 1.55969 1.02544 1.01292 1.22538 0.98382 0.89355 1.03362 1.22704 1.00039 0.99166 0.92632 0.91684 0.91957 0.91829 0.92142 0.90512 0.74213 0.85321 0.89621 0.86779 0.83559 0.89908 0.96285 0.90784 0.94837 0.90567 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.71 71.98 0.70 -1.49 16 2 C -0.11 -2.50 4.99 30.59 0.15 -2.34 16 3 C 0.07 1.89 2.28 44.17 0.10 1.99 16 4 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 5 C 0.47 17.20 6.30 87.66 0.55 17.76 16 6 O -0.52 -23.03 10.13 -3.01 -0.03 -23.06 16 7 N -0.65 -25.37 5.39 -308.66 -1.66 -27.03 16 8 C 0.33 16.34 7.41 132.75 0.98 17.33 16 9 C -0.26 -13.58 8.63 22.98 0.20 -13.39 16 10 C 0.11 6.03 5.62 -21.11 -0.12 5.91 16 11 C -0.48 -25.06 9.13 23.52 0.21 -24.85 16 12 H 0.08 4.13 7.88 -2.91 -0.02 4.11 16 13 C 0.04 1.85 5.26 85.29 0.45 2.30 16 14 N -0.81 -39.54 10.73 21.84 0.23 -39.30 16 15 Si 0.99 35.61 29.58 68.60 2.03 37.64 16 16 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 17 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 18 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 19 C -0.30 -15.09 9.90 22.84 0.23 -14.86 16 20 C 0.11 5.48 11.15 84.50 0.94 6.42 16 21 N -0.58 -29.93 7.88 -193.54 -1.52 -31.46 16 22 N -0.50 -12.93 4.48 -927.75 -4.16 -17.09 16 23 C 0.01 0.32 9.16 127.69 1.17 1.48 16 24 C 0.00 0.06 8.90 127.69 1.14 1.20 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.10 7.83 -2.39 -0.02 1.08 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 1.47 6.03 -2.39 -0.01 1.46 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.42 13.38 8.70 -92.71 -0.81 12.57 16 31 H 0.13 6.59 6.05 -2.91 -0.02 6.57 16 32 H 0.29 12.65 8.29 -92.71 -0.77 11.88 16 33 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 34 H 0.15 6.21 8.06 -2.91 -0.02 6.19 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.02 0.65 5.90 -2.39 -0.01 0.64 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.03 1.16 5.54 -2.39 -0.01 1.14 16 39 H 0.08 1.85 5.73 -2.38 -0.01 1.84 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.68 323.01 1.84 -63.84 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: 0.25 Total: 39.02 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.71 Total: -2.55 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -7.11 Total: -114.88 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.03 Total: -23.06 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -65.68 1.84 -63.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532500122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.084 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds