Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47133 * 2 1 4 4 H 1.09003 * 109.47339 * 54.99884 * 3 2 1 5 5 C 1.50697 * 109.47469 * 174.99800 * 3 2 1 6 6 H 1.07998 * 120.00453 * 119.99640 * 5 3 2 7 7 C 1.37881 * 119.99631 * 300.00173 * 5 3 2 8 8 N 1.31521 * 119.99714 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47286 * 89.99940 * 9 7 5 11 11 H 1.48503 * 109.47159 * 210.00284 * 9 7 5 12 12 H 1.48500 * 109.47305 * 329.99852 * 9 7 5 13 13 N 1.46497 * 109.47225 * 294.99765 * 3 2 1 14 14 C 1.34782 * 120.00376 * 84.99663 * 13 3 2 15 15 O 1.21938 * 119.99629 * 0.02562 * 14 13 3 16 16 N 1.33231 * 120.00203 * 180.02562 * 14 13 3 17 17 C 1.34328 * 120.00062 * 244.80654 * 16 14 13 18 18 C 1.41345 * 120.67178 * 355.14164 * 17 16 14 19 19 C 1.35235 * 119.25633 * 179.97438 * 18 17 16 20 20 C 1.50695 * 119.65457 * 179.97438 * 19 18 17 21 21 N 1.35545 * 120.68654 * 0.02562 * 19 18 17 22 22 H 0.96998 * 119.27077 * 179.97438 * 21 19 18 23 23 C 1.35545 * 121.45250 * 359.97438 * 21 19 18 24 24 C 1.35227 * 120.69197 * 0.25643 * 23 21 19 25 25 C 1.50694 * 120.37309 * 179.71936 * 24 23 21 26 26 H 1.08991 * 109.47238 * 300.00129 * 1 2 3 27 27 H 1.08997 * 109.46495 * 60.00458 * 1 2 3 28 28 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47595 * 239.99826 * 2 1 3 30 30 H 1.08998 * 109.46961 * 119.99787 * 2 1 3 31 31 H 0.96998 * 119.99851 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00177 * 265.00539 * 13 3 2 33 33 H 1.08003 * 120.37655 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47235 * 270.02095 * 20 19 18 35 35 H 1.08994 * 109.47323 * 30.02696 * 20 19 18 36 36 H 1.09008 * 109.46585 * 150.02220 * 20 19 18 37 37 H 1.07998 * 119.65105 * 179.97438 * 23 21 19 38 38 H 1.09002 * 109.46870 * 90.00132 * 25 24 23 39 39 H 1.08992 * 109.47222 * 209.99967 * 25 24 23 40 40 H 1.09000 * 109.47200 * 330.00309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4540 0.8796 1.3360 9 14 3.0962 0.1101 2.5707 10 1 2.8743 -1.3260 2.2646 11 1 3.7939 0.2361 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3435 2.6324 -0.4293 16 7 0.0826 3.2595 -2.5057 17 6 -0.1454 4.5831 -2.5291 18 6 -0.1156 5.3411 -1.3365 19 6 -0.3488 6.6720 -1.3932 20 6 -0.3198 7.4887 -0.1271 21 7 -0.6094 7.2788 -2.5769 22 1 -0.7740 8.2345 -2.5938 23 6 -0.6449 6.5794 -3.7375 24 6 -0.4246 5.2452 -3.7464 25 6 -0.4721 4.4737 -5.0400 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4818 2.1129 32 1 2.2720 2.1230 -1.9978 33 1 0.0919 4.8630 -0.3906 34 1 -1.3173 7.5149 0.3113 35 1 0.3762 7.0378 0.5802 36 1 0.0028 8.5042 -0.3572 37 1 -0.8557 7.0924 -4.6642 38 1 0.5214 4.4545 -5.4882 39 1 -0.8015 3.4537 -4.8428 40 1 -1.1703 4.9551 -5.7248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547786531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = 23.220098 kcal Electronic energy + Delta-G solvation = -21750.195075 eV Core-core repulsion = 18565.876384 eV Total energy + Delta-G solvation = -3184.318691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91858 -38.96348 -35.82110 -34.73780 -33.57854 -32.18201 -31.60237 -30.65325 -28.87330 -27.22252 -25.99829 -23.94197 -22.48976 -21.92914 -20.31974 -19.19428 -18.25209 -17.61090 -16.84811 -16.12592 -15.55149 -15.10540 -14.96585 -14.75241 -13.83998 -13.49067 -13.37139 -13.32090 -13.09483 -12.93741 -12.56527 -12.53254 -12.31653 -12.07584 -11.71853 -11.68278 -11.48206 -10.94853 -10.88700 -10.73116 -10.46461 -9.90415 -9.75416 -9.30566 -9.29924 -9.05785 -8.62470 -8.44836 -7.74610 -7.24039 -6.10182 -4.10839 1.05446 1.28909 2.72957 3.32811 3.38701 3.42639 3.50726 3.78939 4.27758 4.41553 4.42544 4.69723 4.85300 4.99425 5.08672 5.17805 5.24069 5.38981 5.58651 5.65952 5.78831 5.87748 5.98573 6.14716 6.19356 6.22619 6.38269 6.48415 6.66671 6.79855 6.85798 6.89095 7.02554 7.09433 7.23011 7.49726 7.55303 7.76267 8.27218 8.42294 8.87206 8.95080 9.46736 9.64040 11.02151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.004860 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.360747 B = 5760.149985 C = 6139.717494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.045 0.955 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.661 3.339 15 O -0.602 6.602 16 N -0.622 5.622 17 C 0.311 3.689 18 C -0.240 4.240 19 C 0.151 3.849 20 C -0.121 4.121 21 N -0.591 5.591 22 H 0.415 0.585 23 C 0.113 3.887 24 C -0.161 4.161 25 C -0.087 4.087 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.393 0.607 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.167 0.833 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 17.162 -10.107 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.063 0.937 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.185 1.185 13 N -0.349 5.349 14 C 0.361 3.639 15 O -0.483 6.483 16 N -0.357 5.357 17 C 0.147 3.853 18 C -0.267 4.267 19 C 0.039 3.961 20 C -0.179 4.179 21 N -0.196 5.196 22 H 0.250 0.750 23 C -0.017 4.017 24 C -0.170 4.170 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.169 0.831 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.184 0.816 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.012 16.136 -9.720 22.895 hybrid contribution -0.078 0.034 1.048 1.052 sum -13.090 16.170 -8.672 22.540 Atomic orbital electron populations 1.21846 0.96881 0.98613 1.02496 1.22277 0.94496 1.00141 1.00707 1.19037 0.95158 0.88353 0.82789 0.93705 1.21096 0.88810 1.39204 1.07560 0.90333 1.24824 0.94842 0.95218 0.97679 1.69882 1.08654 1.45008 1.29812 0.86894 0.80974 0.80069 0.80724 1.20267 1.22332 1.18479 1.45764 1.13641 1.57875 1.17595 1.17300 0.82637 0.80846 0.83122 1.90893 1.51677 1.65548 1.40222 1.68698 1.29917 1.08089 1.29041 1.18602 0.86440 0.89254 0.91054 1.21759 1.11277 0.92503 1.01179 1.20272 0.95236 0.93746 0.86808 1.21010 1.04524 0.98992 0.93345 1.40907 1.61836 1.11859 1.04986 0.74989 1.21511 0.98201 0.92767 0.89182 1.19306 1.09421 0.92168 0.96078 1.20383 1.01599 1.00811 0.91609 0.93101 0.92574 0.95347 0.92453 0.93114 0.92455 0.77439 0.83057 0.89549 0.88748 0.90765 0.81624 0.91543 0.90074 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.51 37.16 0.32 -2.99 16 2 C -0.14 -3.45 5.11 -26.73 -0.14 -3.58 16 3 C 0.25 6.64 1.83 -69.09 -0.13 6.52 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.53 -15.33 9.31 -34.44 -0.32 -15.65 16 6 H 0.08 2.40 7.98 -52.49 -0.42 1.99 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.88 22.97 24.41 -169.99 -4.15 18.82 16 10 H -0.28 -6.99 6.83 56.52 0.39 -6.60 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 12 H -0.26 -6.76 6.53 56.52 0.37 -6.39 16 13 N -0.70 -16.78 5.03 -60.15 -0.30 -17.09 16 14 C 0.66 15.56 5.48 -88.28 -0.48 15.07 16 15 O -0.60 -15.59 12.94 4.98 0.06 -15.52 16 16 N -0.62 -12.75 9.62 -14.59 -0.14 -12.89 16 17 C 0.31 5.20 6.59 -84.41 -0.56 4.64 16 18 C -0.24 -3.72 8.65 -39.47 -0.34 -4.06 16 19 C 0.15 1.51 6.80 -82.02 -0.56 0.95 16 20 C -0.12 -0.84 10.07 36.00 0.36 -0.47 16 21 N -0.59 -3.82 5.24 -9.31 -0.05 -3.87 16 22 H 0.41 0.94 8.77 -40.82 -0.36 0.58 16 23 C 0.11 0.82 10.82 -16.98 -0.18 0.63 16 24 C -0.16 -1.91 5.89 -104.51 -0.62 -2.52 16 25 C -0.09 -0.90 9.81 36.00 0.35 -0.55 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 27 H 0.06 1.36 5.64 -51.93 -0.29 1.07 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 1.30 3.22 -51.93 -0.17 1.13 16 31 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.39 8.92 8.64 -40.82 -0.35 8.57 16 33 H 0.15 2.85 6.35 -52.48 -0.33 2.52 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 37 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 40 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -38.20 321.86 -6.97 -45.16 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.63 Total: 7.20 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.39 Total: 0.16 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.28 Total: -60.67 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.06 Total: -15.52 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.15 Total: 18.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -38.20 -6.97 -45.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547786531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.384 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds