Wall clock time and date at job start Mon Mar 30 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47133 * 2 1 4 4 H 1.09003 * 109.47339 * 54.99884 * 3 2 1 5 5 C 1.50697 * 109.47469 * 174.99800 * 3 2 1 6 6 H 1.07998 * 120.00453 * 119.99640 * 5 3 2 7 7 C 1.37881 * 119.99631 * 300.00173 * 5 3 2 8 8 N 1.31521 * 119.99714 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47286 * 89.99940 * 9 7 5 11 11 H 1.48503 * 109.47159 * 210.00284 * 9 7 5 12 12 H 1.48500 * 109.47305 * 329.99852 * 9 7 5 13 13 N 1.46497 * 109.47225 * 294.99765 * 3 2 1 14 14 C 1.34782 * 120.00376 * 84.99663 * 13 3 2 15 15 O 1.21938 * 119.99629 * 0.02562 * 14 13 3 16 16 N 1.33231 * 120.00203 * 180.02562 * 14 13 3 17 17 C 1.34328 * 120.00062 * 244.80654 * 16 14 13 18 18 C 1.41345 * 120.67178 * 355.14164 * 17 16 14 19 19 C 1.35235 * 119.25633 * 179.97438 * 18 17 16 20 20 C 1.50695 * 119.65457 * 179.97438 * 19 18 17 21 21 N 1.35545 * 120.68654 * 0.02562 * 19 18 17 22 22 H 0.96998 * 119.27077 * 179.97438 * 21 19 18 23 23 C 1.35545 * 121.45250 * 359.97438 * 21 19 18 24 24 C 1.35227 * 120.69197 * 0.25643 * 23 21 19 25 25 C 1.50694 * 120.37309 * 179.71936 * 24 23 21 26 26 H 1.08991 * 109.47238 * 300.00129 * 1 2 3 27 27 H 1.08997 * 109.46495 * 60.00458 * 1 2 3 28 28 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47595 * 239.99826 * 2 1 3 30 30 H 1.08998 * 109.46961 * 119.99787 * 2 1 3 31 31 H 0.96998 * 119.99851 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00177 * 265.00539 * 13 3 2 33 33 H 1.08003 * 120.37655 * 0.02562 * 18 17 16 34 34 H 1.08992 * 109.47235 * 270.02095 * 20 19 18 35 35 H 1.08994 * 109.47323 * 30.02696 * 20 19 18 36 36 H 1.09008 * 109.46585 * 150.02220 * 20 19 18 37 37 H 1.07998 * 119.65105 * 179.97438 * 23 21 19 38 38 H 1.09002 * 109.46870 * 90.00132 * 25 24 23 39 39 H 1.08992 * 109.47222 * 209.99967 * 25 24 23 40 40 H 1.09000 * 109.47200 * 330.00309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 5.4540 0.8796 1.3360 9 14 3.0962 0.1101 2.5707 10 1 2.8743 -1.3260 2.2646 11 1 3.7939 0.2361 3.8756 12 1 1.7880 0.8094 2.6395 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3435 2.6324 -0.4293 16 7 0.0826 3.2595 -2.5057 17 6 -0.1454 4.5831 -2.5291 18 6 -0.1156 5.3411 -1.3365 19 6 -0.3488 6.6720 -1.3932 20 6 -0.3198 7.4887 -0.1271 21 7 -0.6094 7.2788 -2.5769 22 1 -0.7740 8.2345 -2.5938 23 6 -0.6449 6.5794 -3.7375 24 6 -0.4246 5.2452 -3.7464 25 6 -0.4721 4.4737 -5.0400 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8770 0.4818 2.1129 32 1 2.2720 2.1230 -1.9978 33 1 0.0919 4.8630 -0.3906 34 1 -1.3173 7.5149 0.3113 35 1 0.3762 7.0378 0.5802 36 1 0.0028 8.5042 -0.3572 37 1 -0.8557 7.0924 -4.6642 38 1 0.5214 4.4545 -5.4882 39 1 -0.8015 3.4537 -4.8428 40 1 -1.1703 4.9551 -5.7248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547786531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:00 Heat of formation + Delta-G solvation = -8.996938 kcal Electronic energy + Delta-G solvation = -21751.592111 eV Core-core repulsion = 18565.876384 eV Total energy + Delta-G solvation = -3185.715727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92156 -40.58781 -37.46335 -36.12706 -34.60689 -34.36398 -33.26673 -31.94109 -29.94927 -29.21906 -26.74723 -25.27717 -24.41834 -23.02314 -22.08778 -21.00312 -19.31740 -19.00558 -18.09766 -17.77765 -17.51605 -16.64562 -16.22102 -15.91235 -15.58093 -15.14588 -15.00518 -14.41937 -14.17178 -14.06996 -13.87556 -13.73497 -13.70175 -13.24385 -13.18832 -13.11579 -12.94834 -12.80768 -12.48653 -12.34967 -12.17373 -11.88478 -11.57261 -11.28070 -11.27251 -10.87975 -10.13849 -9.98957 -9.65749 -8.42783 -8.40303 -6.46636 0.05936 0.33740 1.23882 1.30004 1.43100 1.95864 2.01690 2.23897 2.41787 2.91947 3.02731 3.52302 3.79347 4.02449 4.11551 4.16597 4.19875 4.26962 4.38616 4.53265 4.63080 4.74140 4.76610 4.84498 4.89947 5.00765 5.04104 5.07475 5.08639 5.19727 5.25420 5.38772 5.44558 5.64134 5.66338 5.76986 5.86514 6.17821 6.33788 6.52811 6.87652 7.16832 7.18445 7.94477 8.74466 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.004860 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.360747 B = 5760.149985 C = 6139.717494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 C 0.262 3.738 4 H 0.016 0.984 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.707 5.707 14 C 0.670 3.330 15 O -0.642 6.642 16 N -0.685 5.685 17 C 0.301 3.699 18 C -0.303 4.303 19 C 0.197 3.803 20 C -0.124 4.124 21 N -0.555 5.555 22 H 0.447 0.553 23 C 0.164 3.836 24 C -0.202 4.202 25 C -0.079 4.079 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.272 0.728 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.236 0.764 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 20.872 -11.549 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.174 4.174 3 C 0.156 3.844 4 H 0.034 0.966 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.167 4.167 8 N -0.571 5.571 9 Si 0.766 3.234 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.357 5.357 14 C 0.371 3.629 15 O -0.526 6.526 16 N -0.428 5.428 17 C 0.146 3.854 18 C -0.331 4.331 19 C 0.082 3.918 20 C -0.181 4.181 21 N -0.159 5.159 22 H 0.289 0.711 23 C 0.033 3.967 24 C -0.210 4.210 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.227 0.773 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.115 19.975 -11.212 27.444 hybrid contribution 0.493 -0.625 1.367 1.582 sum -14.622 19.350 -9.845 26.175 Atomic orbital electron populations 1.21683 0.95532 1.00137 1.01103 1.22203 0.95632 0.98818 1.00719 1.18682 0.93175 0.89291 0.83273 0.96607 1.21229 0.90066 1.38886 1.07023 0.93289 1.25531 0.95877 0.95614 0.99698 1.69977 1.10117 1.46079 1.30920 0.85992 0.79086 0.79968 0.78374 1.18348 1.21036 1.19090 1.45686 1.14468 1.58861 1.16708 1.17559 0.81581 0.80280 0.83435 1.90806 1.52586 1.66946 1.42257 1.68572 1.37487 1.10084 1.26651 1.19306 0.84310 0.88398 0.93364 1.21466 1.17120 0.95153 0.99325 1.20518 0.89975 0.92082 0.89263 1.21186 1.05315 1.00375 0.91225 1.41219 1.57335 1.13581 1.03801 0.71110 1.22434 0.92075 0.91144 0.91039 1.19553 1.12463 0.94257 0.94738 1.20320 1.02516 0.99100 0.91743 0.94529 0.94005 0.92104 0.91973 0.93323 0.91875 0.77316 0.87808 0.87675 0.90716 0.86205 0.74774 0.91692 0.93903 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.51 71.98 0.61 -5.52 16 2 C -0.14 -6.98 5.11 30.59 0.16 -6.82 16 3 C 0.26 14.71 1.83 44.24 0.08 14.79 16 4 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16 5 C -0.53 -32.75 9.31 25.60 0.24 -32.51 16 6 H 0.05 3.21 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.98 5.45 84.65 0.46 2.44 16 8 N -0.93 -59.02 13.96 21.45 0.30 -58.72 16 9 Si 0.94 48.40 24.41 68.60 1.67 50.07 16 10 H -0.26 -12.51 6.83 99.48 0.68 -11.84 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.27 -13.92 6.53 99.48 0.65 -13.27 16 13 N -0.71 -36.98 5.03 -462.33 -2.32 -39.31 16 14 C 0.67 34.49 5.48 179.53 0.98 35.48 16 15 O -0.64 -36.23 12.94 -5.11 -0.07 -36.30 16 16 N -0.69 -30.63 9.62 -319.05 -3.07 -33.70 16 17 C 0.30 10.53 6.59 40.29 0.27 10.79 16 18 C -0.30 -9.81 8.65 22.34 0.19 -9.61 16 19 C 0.20 3.38 6.80 41.29 0.28 3.66 16 20 C -0.12 -1.28 10.07 71.23 0.72 -0.57 16 21 N -0.55 -3.74 5.24 -183.36 -0.96 -4.70 16 22 H 0.45 -1.75 8.77 -92.71 -0.81 -2.56 16 23 C 0.16 1.36 10.82 83.42 0.90 2.26 16 24 C -0.20 -4.36 5.89 -19.79 -0.12 -4.48 16 25 C -0.08 -1.53 9.81 71.23 0.70 -0.83 16 26 H 0.04 1.83 7.84 -2.39 -0.02 1.81 16 27 H 0.04 2.13 5.64 -2.39 -0.01 2.11 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.05 2.51 3.22 -2.39 -0.01 2.50 16 31 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.39 19.72 8.64 -92.71 -0.80 18.92 16 33 H 0.10 4.40 6.35 -2.91 -0.02 4.38 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.18 8.07 -2.39 -0.02 1.16 16 36 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.24 -1.00 8.06 -2.91 -0.02 -1.02 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.16 7.58 -2.39 -0.02 1.14 16 40 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 Total: -1.00 -95.77 321.86 0.40 -95.37 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.62 Total: 18.22 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.48 Total: 9.07 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -6.06 Total: -136.43 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.07 Total: -36.30 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.67 Total: 50.07 kcal Total: -95.77 0.40 -95.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547786531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.368 kcal (2) G-P(sol) polarization free energy of solvation -95.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds