Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 N 1.46503 * 109.47558 * 120.00102 * 2 1 3 5 5 C 1.46501 * 119.99868 * 300.00185 * 4 2 1 6 6 C 1.50694 * 109.47362 * 269.99975 * 5 4 2 7 7 H 1.08003 * 119.99751 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00478 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99552 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00404 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47078 * 59.99564 * 10 8 6 12 12 H 1.48501 * 109.47308 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46964 * 299.99907 * 10 8 6 14 14 C 1.34777 * 120.00034 * 119.99558 * 4 2 1 15 15 O 1.21284 * 119.99577 * 180.02562 * 14 4 2 16 16 C 1.50694 * 120.00301 * 0.02562 * 14 4 2 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 14 4 18 18 C 1.50699 * 109.47299 * 179.97438 * 17 16 14 19 19 C 1.38602 * 120.79596 * 90.00262 * 18 17 16 20 20 N 1.32331 * 119.10423 * 179.97438 * 19 18 17 21 21 C 1.31794 * 120.81888 * 359.97438 * 20 19 18 22 22 N 1.31795 * 121.75372 * 0.02562 * 21 20 19 23 23 C 1.32334 * 120.81807 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47438 * 299.99730 * 1 2 3 25 25 H 1.09000 * 109.47207 * 59.99961 * 1 2 3 26 26 H 1.09004 * 109.46882 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47438 * 240.00270 * 2 1 3 28 28 H 1.08999 * 109.47839 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46985 * 300.00174 * 3 2 1 30 30 H 1.09007 * 109.46994 * 60.00058 * 3 2 1 31 31 H 1.09003 * 109.47068 * 30.00110 * 5 4 2 32 32 H 1.08999 * 109.47243 * 149.99222 * 5 4 2 33 33 H 0.97009 * 119.99765 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47033 * 59.99689 * 16 14 4 35 35 H 1.09005 * 109.47292 * 299.99987 * 16 14 4 36 36 H 1.08998 * 109.46952 * 60.00104 * 17 16 14 37 37 H 1.08997 * 109.47566 * 300.00466 * 17 16 14 38 38 H 1.07994 * 120.45169 * 359.95292 * 19 18 17 39 39 H 1.08003 * 119.12654 * 179.71869 * 21 20 19 40 40 H 1.07998 * 120.44737 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.7031 0.8018 2.9830 7 1 3.5431 1.0357 2.3457 8 6 2.5817 1.4100 4.2144 9 7 1.5590 1.1247 4.9906 10 14 3.8695 2.6391 4.7802 11 1 3.9250 3.7735 3.8237 12 1 3.5107 3.1465 6.1290 13 1 5.1963 1.9746 4.8376 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3584 2.0627 16 6 3.1576 -2.3010 -0.2962 17 6 4.0376 -3.5447 -0.1559 18 6 4.4015 -4.0597 -1.5246 19 6 5.5448 -3.6145 -2.1694 20 7 5.8326 -4.0895 -3.3706 21 6 5.0482 -4.9744 -3.9525 22 7 3.9534 -5.4202 -3.3697 23 6 3.6012 -4.9898 -2.1689 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 0.6904 0.2973 2.4844 32 1 1.6238 -1.0227 3.2291 33 1 1.4734 1.5529 5.8569 34 1 3.7028 -1.5302 -0.8409 35 1 2.2494 -2.5578 -0.8416 36 1 3.4928 -4.3157 0.3889 37 1 4.9457 -3.2876 0.3893 38 1 6.1919 -2.8896 -1.6982 39 1 5.3068 -5.3403 -4.9352 40 1 2.7026 -5.3589 -1.6971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550354385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = -1.266929 kcal Electronic energy + Delta-G solvation = -21363.809550 eV Core-core repulsion = 18178.429021 eV Total energy + Delta-G solvation = -3185.380529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18510 -39.28448 -36.13419 -34.72337 -33.85810 -32.84684 -30.87697 -30.45408 -27.54758 -26.76343 -25.31630 -24.75138 -23.02006 -21.84677 -21.09865 -17.99428 -17.80676 -17.75136 -16.83612 -16.47831 -15.28660 -15.00737 -14.84459 -14.45532 -14.20239 -13.83679 -13.73428 -13.52837 -13.35427 -12.99567 -12.42104 -12.34067 -12.13111 -11.70488 -11.60379 -11.20851 -11.12369 -11.00255 -10.96341 -10.89850 -10.86397 -10.58867 -10.39543 -10.03822 -9.60487 -9.55032 -9.38905 -8.89374 -8.42965 -7.67793 -6.04667 -4.08148 0.70585 0.88485 3.30243 3.34676 3.35421 3.41290 3.57283 3.86636 3.98216 4.04564 4.43132 4.44166 4.60043 4.70353 5.04753 5.13731 5.24347 5.25834 5.29184 5.38123 5.52570 5.61323 5.61715 5.64510 5.98251 6.05773 6.08673 6.13156 6.23991 6.25281 6.33659 6.56612 6.76165 6.93056 7.09255 7.45367 7.54696 7.87648 7.91902 8.24167 8.42170 8.89594 9.07149 9.56044 11.03459 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.004010 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.588867 B = 6980.404851 C = 7338.673696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.136 4.136 17 C -0.058 4.058 18 C -0.177 4.177 19 C 0.149 3.851 20 N -0.519 5.519 21 C 0.279 3.721 22 N -0.520 5.520 23 C 0.148 3.852 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.193 0.807 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -6.976 -15.912 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.324 5.324 5 C 0.127 3.873 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.176 4.176 17 C -0.097 4.097 18 C -0.181 4.181 19 C -0.017 4.017 20 N -0.232 5.232 21 C -0.008 4.008 22 N -0.233 5.233 23 C -0.018 4.018 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.186 0.814 39 H 0.210 0.790 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.067 -7.562 -16.109 17.915 hybrid contribution 0.435 1.162 1.135 1.682 sum 2.502 -6.400 -14.974 16.476 Atomic orbital electron populations 1.22158 0.95601 1.01773 1.02481 1.20996 0.94107 0.94157 0.87913 1.22140 1.01326 0.95715 1.02328 1.48344 1.49029 1.26367 1.08650 1.19230 0.95870 0.94966 0.77237 1.21394 1.08908 1.23507 1.02086 0.92453 1.24923 0.95739 0.97118 0.96352 1.69922 1.29507 1.43330 1.10715 0.86613 0.82059 0.81280 0.77791 1.20293 1.21250 1.20247 1.20238 0.79309 0.81065 0.90341 1.90679 1.53466 1.58212 1.39697 1.21694 1.00786 0.97999 0.97108 1.20249 1.01519 0.97340 0.90597 1.21850 0.97359 0.99216 0.99663 1.23248 0.93697 0.95088 0.89692 1.68430 1.32453 1.11576 1.10768 1.24929 0.86409 0.89935 0.99566 1.68425 1.17664 1.26440 1.10753 1.23219 0.97872 0.90977 0.89744 0.91265 0.92304 0.92933 0.90823 0.92773 0.93311 0.90022 0.94843 0.94092 0.92732 0.89452 0.89595 0.89453 0.89333 0.81425 0.79016 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.17 37.15 0.34 -1.94 16 2 C 0.13 2.06 3.17 -67.93 -0.22 1.84 16 3 C -0.16 -2.50 8.47 37.16 0.31 -2.19 16 4 N -0.59 -11.77 2.39 -167.47 -0.40 -12.17 16 5 C 0.25 6.15 4.59 -5.20 -0.02 6.13 16 6 C -0.52 -14.11 7.83 -34.44 -0.27 -14.37 16 7 H 0.06 1.55 7.63 -52.48 -0.40 1.15 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 10 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.50 9.66 7.67 -10.99 -0.08 9.57 16 15 O -0.54 -12.77 15.56 5.55 0.09 -12.68 16 16 C -0.14 -1.76 3.99 -27.89 -0.11 -1.87 16 17 C -0.06 -0.68 4.68 -27.89 -0.13 -0.81 16 18 C -0.18 -1.84 5.17 -104.36 -0.54 -2.38 16 19 C 0.15 1.56 11.01 -17.20 -0.19 1.37 16 20 N -0.52 -5.85 10.44 -14.58 -0.15 -6.00 16 21 C 0.28 2.86 12.29 -92.15 -1.13 1.73 16 22 N -0.52 -5.75 10.44 -14.58 -0.15 -5.90 16 23 C 0.15 1.51 11.01 -17.21 -0.19 1.32 16 24 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.55 6.92 -51.92 -0.36 1.19 16 31 H 0.03 0.85 6.43 -51.93 -0.33 0.52 16 32 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 1.03 7.79 -51.93 -0.40 0.63 16 35 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 36 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 37 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 38 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.19 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -32.74 335.06 -8.04 -40.78 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.86 Total: -0.14 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.33 Total: -0.02 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.03 Total: -49.42 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.74 -8.04 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550354385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.517 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds