Wall clock time and date at job start Mon Mar 30 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47040 * 2 1 4 4 N 1.46897 * 109.46911 * 119.99813 * 2 1 3 5 5 C 1.46903 * 110.99868 * 147.95922 * 4 2 1 6 6 C 1.50702 * 109.46762 * 287.86075 * 5 4 2 7 7 O 1.21288 * 120.00328 * 4.66417 * 6 5 4 8 8 N 1.34776 * 119.99668 * 184.66523 * 6 5 4 9 9 C 1.37102 * 120.00014 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00124 * 359.97438 * 9 8 6 11 11 C 1.38948 * 120.00103 * 179.97438 * 9 8 6 12 12 N 1.31410 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00071 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47201 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47359 * 120.00131 * 13 11 9 16 16 H 1.48501 * 109.47298 * 240.00035 * 13 11 9 17 17 C 1.46900 * 111.00346 * 271.91168 * 4 2 1 18 18 C 1.50697 * 109.46864 * 71.60283 * 17 4 2 19 19 C 1.38237 * 119.61765 * 92.77635 * 18 17 4 20 20 C 1.38628 * 119.15986 * 179.74517 * 19 18 17 21 21 C 1.38674 * 118.41973 * 0.46804 * 20 19 18 22 22 C 1.38180 * 119.16244 * 359.51205 * 21 20 19 23 23 N 1.31854 * 119.62179 * 272.74989 * 18 17 4 24 24 H 1.09002 * 109.47072 * 305.40054 * 1 2 3 25 25 H 1.09007 * 109.47064 * 65.39595 * 1 2 3 26 26 H 1.08999 * 109.47329 * 185.39854 * 1 2 3 27 27 H 1.09000 * 109.46930 * 240.00025 * 2 1 3 28 28 H 1.09001 * 109.47499 * 183.26708 * 3 2 1 29 29 H 1.08999 * 109.47364 * 303.26549 * 3 2 1 30 30 H 1.09008 * 109.47393 * 63.26967 * 3 2 1 31 31 H 1.09000 * 109.46817 * 47.85789 * 5 4 2 32 32 H 1.08999 * 109.47100 * 167.85927 * 5 4 2 33 33 H 0.97003 * 120.00499 * 359.97438 * 8 6 5 34 34 H 0.97006 * 120.00233 * 180.02562 * 12 11 9 35 35 H 1.09007 * 109.47097 * 311.60814 * 17 4 2 36 36 H 1.08995 * 109.47377 * 191.60421 * 17 4 2 37 37 H 1.07996 * 120.41231 * 359.95702 * 19 18 17 38 38 H 1.07995 * 120.78541 * 180.23432 * 20 19 18 39 39 H 1.07998 * 120.41729 * 179.77746 * 21 20 19 40 40 H 1.08000 * 119.61262 * 180.24731 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.2911 -1.3770 0.9299 6 6 3.0386 -2.5813 0.0599 7 8 1.9250 -2.7963 -0.3699 8 7 4.0503 -3.4196 -0.2406 9 6 3.8208 -4.5149 -1.0325 10 1 2.8292 -4.7063 -1.4152 11 6 4.8639 -5.3788 -1.3427 12 7 6.0706 -5.1457 -0.8774 13 14 4.5510 -6.8716 -2.4211 14 1 3.1190 -6.9084 -2.8121 15 1 5.3954 -6.7877 -3.6398 16 1 4.8899 -8.1060 -1.6683 17 6 2.1520 0.2388 2.3279 18 6 0.7822 0.6292 2.8202 19 6 0.1958 -0.0863 3.8473 20 6 -1.0622 0.2844 4.2964 21 6 -1.6904 1.3596 3.6862 22 6 -1.0419 2.0275 2.6651 23 7 0.1572 1.6497 2.2666 24 1 -0.3633 0.5953 0.8377 25 1 -0.3633 0.4279 -0.9344 26 1 -0.3634 -1.0231 0.0967 27 1 1.8933 -0.5138 -0.8900 28 1 3.1284 1.4431 -0.0586 29 1 1.6296 1.9729 -0.8592 30 1 1.7253 1.9392 0.9179 31 1 3.9697 -0.6947 0.4179 32 1 3.7386 -1.6961 1.8712 33 1 4.9411 -3.2475 0.1029 34 1 6.7989 -5.7486 -1.0943 35 1 2.6888 1.1300 2.0025 36 1 2.7040 -0.2438 3.1343 37 1 0.7128 -0.9214 4.2965 38 1 -1.5432 -0.2538 5.0997 39 1 -2.6723 1.6737 4.0080 40 1 -1.5228 2.8684 2.1875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553545047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:05 Heat of formation + Delta-G solvation = 27.091446 kcal Electronic energy + Delta-G solvation = -21781.993411 eV Core-core repulsion = 18597.842593 eV Total energy + Delta-G solvation = -3184.150817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57408 -38.64979 -36.97901 -33.82132 -32.60983 -32.22385 -31.37194 -30.88459 -27.75833 -26.69226 -25.29138 -23.66844 -23.50933 -22.18360 -19.69058 -18.84927 -17.78454 -16.97209 -16.42128 -15.89818 -15.55821 -15.26234 -15.05483 -14.49693 -14.08981 -13.84647 -13.55278 -13.43733 -13.16830 -12.90798 -12.66554 -12.18267 -12.04595 -11.80908 -11.56595 -11.43089 -11.12890 -11.02540 -10.88492 -10.64468 -10.36755 -10.30681 -10.17229 -9.60375 -9.44804 -9.23362 -8.96866 -8.36845 -7.89725 -7.74932 -6.36339 -3.76590 1.08736 1.25299 3.19705 3.29765 3.37177 3.63651 3.98574 4.15102 4.25235 4.46095 4.70470 4.79616 5.03603 5.07882 5.15825 5.30382 5.39058 5.43619 5.48010 5.63720 5.68362 5.76851 5.81235 5.88896 5.97047 6.11957 6.13984 6.16978 6.28089 6.36345 6.37454 6.45908 6.60046 6.84845 6.89945 7.44022 7.51691 7.60563 7.97133 8.13017 8.68890 9.24702 9.61702 10.14351 10.81759 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032461 B = 0.003820 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.375740 B = 7327.610780 C = 7440.673626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.092 3.908 3 C -0.194 4.194 4 N -0.505 5.505 5 C 0.045 3.955 6 C 0.447 3.553 7 O -0.573 6.573 8 N -0.568 5.568 9 C -0.295 4.295 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.904 5.904 13 Si 0.928 3.072 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.088 3.912 18 C 0.148 3.852 19 C -0.150 4.150 20 C -0.078 4.078 21 C -0.179 4.179 22 C 0.092 3.908 23 N -0.466 5.466 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.391 0.609 34 H 0.270 0.730 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 13.979 10.014 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 C -0.252 4.252 4 N -0.229 5.229 5 C -0.086 4.086 6 C 0.232 3.768 7 O -0.456 6.456 8 N -0.206 5.206 9 C -0.425 4.425 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.546 5.546 13 Si 0.755 3.245 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.040 4.040 18 C 0.011 3.989 19 C -0.170 4.170 20 C -0.104 4.104 21 C -0.199 4.199 22 C -0.065 4.065 23 N -0.176 5.176 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.224 0.776 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.272 13.804 9.140 18.975 hybrid contribution 0.634 -0.663 0.085 0.921 sum -8.638 13.141 9.226 18.232 Atomic orbital electron populations 1.22086 0.94961 1.02157 1.01077 1.21531 0.96080 0.91510 0.92497 1.22703 0.99773 0.98725 1.04037 1.61788 1.27623 1.28151 1.05328 1.21896 0.90490 0.95904 1.00358 1.19751 0.85898 0.85543 0.85629 1.90524 1.23121 1.75385 1.56595 1.41865 1.10020 1.23046 1.45649 1.19733 0.97112 1.00537 1.25087 0.87966 1.25230 0.94795 0.99518 0.98491 1.69621 1.00408 1.38767 1.45773 0.85826 0.78649 0.80735 0.79290 1.19280 1.20838 1.20817 1.21187 0.91347 0.96689 0.94771 1.21051 0.96100 0.90409 0.91387 1.21954 0.96200 1.00418 0.98430 1.21561 0.94565 0.95743 0.98567 1.22061 1.01362 0.97793 0.98711 1.22684 0.91119 0.98556 0.94144 1.67404 1.09394 1.14553 1.26299 0.91315 0.94006 0.92336 0.90205 0.94011 0.92895 0.88850 0.93148 0.89541 0.77580 0.92042 0.91659 0.89666 0.84738 0.85099 0.85217 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.05 37.16 0.34 -2.16 16 2 C 0.09 1.60 2.13 -67.72 -0.14 1.46 16 3 C -0.19 -2.83 7.87 37.16 0.29 -2.54 16 4 N -0.50 -8.66 4.02 -229.52 -0.92 -9.58 16 5 C 0.04 0.81 5.39 -4.97 -0.03 0.78 16 6 C 0.45 10.69 7.33 -10.98 -0.08 10.61 16 7 O -0.57 -15.71 14.66 5.55 0.08 -15.63 16 8 N -0.57 -14.56 5.29 -10.96 -0.06 -14.61 16 9 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 13 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 C 0.09 1.20 4.86 -4.98 -0.02 1.18 16 18 C 0.15 1.95 5.01 -82.58 -0.41 1.53 16 19 C -0.15 -1.76 9.73 -39.44 -0.38 -2.15 16 20 C -0.08 -0.78 10.18 -39.28 -0.40 -1.18 16 21 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 22 C 0.09 0.96 10.61 -17.55 -0.19 0.78 16 23 N -0.47 -5.97 5.58 -9.47 -0.05 -6.03 16 24 H 0.07 1.09 3.49 -51.93 -0.18 0.90 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.66 6.52 -51.93 -0.34 1.32 16 28 H 0.04 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.31 3.93 -51.92 -0.20 1.10 16 31 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 32 H 0.09 1.37 7.73 -51.93 -0.40 0.97 16 33 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.07 0.85 5.49 -51.92 -0.29 0.56 16 36 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -32.13 321.46 -7.49 -39.62 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.42 Total: 10.94 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.67 Total: -1.75 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.31 Total: -54.35 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.08 Total: -15.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.13 -7.49 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553545047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.712 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds