Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 H 1.09000 * 109.46889 * 54.99990 * 3 2 1 5 5 C 1.50700 * 109.47362 * 174.99933 * 3 2 1 6 6 H 1.07991 * 119.99913 * 119.99865 * 5 3 2 7 7 C 1.37881 * 119.99585 * 300.00396 * 5 3 2 8 8 N 1.31505 * 120.00245 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99485 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47376 * 59.99868 * 9 7 5 11 11 H 1.48506 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46949 * 299.99691 * 9 7 5 13 13 N 1.46499 * 109.47215 * 295.00354 * 3 2 1 14 14 C 1.34774 * 120.00359 * 85.00072 * 13 3 2 15 15 O 1.21279 * 119.99630 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99936 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.38976 * 59.87168 * 16 14 13 18 18 C 1.53169 * 109.57350 * 179.69921 * 16 14 13 19 19 C 1.53500 * 109.44935 * 189.82341 * 18 16 14 20 20 C 1.50707 * 108.05198 * 311.32805 * 19 18 16 21 21 C 1.33865 * 128.67981 * 195.85771 * 20 19 18 22 22 N 1.34417 * 107.79933 * 179.84647 * 21 20 19 23 23 C 1.30789 * 109.32503 * 0.02562 * 22 21 20 24 24 N 1.34411 * 108.55001 * 0.03903 * 23 22 21 25 25 C 1.46470 * 128.44479 * 179.88227 * 24 23 22 26 26 H 1.08999 * 109.47509 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47169 * 300.00139 * 1 2 3 28 28 H 1.09007 * 109.47273 * 59.99498 * 1 2 3 29 29 H 1.09006 * 109.46872 * 240.00391 * 2 1 3 30 30 H 1.08996 * 109.47076 * 120.00029 * 2 1 3 31 31 H 0.97001 * 120.00293 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99713 * 264.99109 * 13 3 2 33 33 H 1.09000 * 109.39295 * 69.85365 * 18 16 14 34 34 H 1.09007 * 109.49839 * 309.85568 * 18 16 14 35 35 H 1.09005 * 109.74715 * 191.68602 * 19 18 16 36 36 H 1.09004 * 109.78694 * 70.98554 * 19 18 16 37 37 H 1.08003 * 126.09382 * 359.86318 * 21 20 19 38 38 H 1.07996 * 125.72805 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.60021 * 317.03754 * 25 24 23 40 40 H 1.08997 * 109.59775 * 77.35404 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1732 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2798 1.3809 11 1 6.3978 0.2166 2.6504 12 1 6.5966 0.1451 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3669 15 8 -0.3395 2.6320 -0.4343 16 6 0.0363 3.3378 -2.6548 17 1 0.0699 2.6125 -3.4678 18 6 -1.3869 3.8893 -2.5262 19 6 -1.8817 4.3530 -3.9033 20 6 -0.8100 5.2158 -4.5184 21 6 -0.9061 6.0578 -5.5546 22 7 0.3029 6.6129 -5.7465 23 6 1.1419 6.1396 -4.8617 24 7 0.4884 5.2649 -4.0780 25 6 1.0094 4.4831 -2.9543 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8291 -0.0605 2.9502 32 1 2.2719 2.1233 -1.9977 33 1 -1.3870 4.7332 -1.8364 34 1 -2.0465 3.1089 -2.1465 35 1 -2.7993 4.9304 -3.7897 36 1 -2.0677 3.4875 -4.5393 37 1 -1.7964 6.2558 -6.1331 38 1 2.1847 6.4067 -4.7755 39 1 1.9863 4.0753 -3.2144 40 1 1.1020 5.1220 -2.0761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563202985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = 8.816731 kcal Electronic energy + Delta-G solvation = -21870.999195 eV Core-core repulsion = 18686.055927 eV Total energy + Delta-G solvation = -3184.943268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37663 -39.51943 -36.37669 -35.07565 -33.13919 -32.48208 -31.34366 -30.28573 -27.96126 -26.95964 -24.79840 -23.37054 -22.46586 -21.44894 -20.37291 -19.52021 -19.06690 -17.53583 -16.98298 -16.00624 -15.68537 -15.31011 -15.07304 -14.47296 -14.20271 -14.05496 -13.92412 -13.73295 -13.32013 -13.09315 -12.78201 -12.32409 -11.97399 -11.66799 -11.56337 -11.32887 -11.22521 -11.05358 -10.99532 -10.89842 -10.41952 -10.26943 -9.99878 -9.73150 -9.57168 -9.19041 -9.13058 -8.59269 -8.38058 -7.98633 -6.21161 -4.31542 2.01728 2.65605 3.11956 3.15206 3.19153 3.25377 3.25638 3.82960 4.27214 4.32967 4.54016 4.61598 4.69422 4.80223 5.08724 5.10413 5.14013 5.24991 5.32388 5.41964 5.54073 5.66655 5.77272 6.00558 6.13651 6.29781 6.33364 6.35209 6.55585 6.69064 6.93150 7.08403 7.15129 7.24085 7.30312 7.50738 7.60983 7.78619 8.02062 8.07924 8.49462 8.65570 8.94664 9.36052 10.83992 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.004479 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.249400 B = 6249.336330 C = 7218.298092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.508 3.492 15 O -0.538 6.538 16 C -0.122 4.122 17 H 0.100 0.900 18 C -0.103 4.103 19 C -0.047 4.047 20 C -0.022 4.022 21 C -0.030 4.030 22 N -0.500 5.500 23 C 0.183 3.817 24 N -0.452 5.452 25 C 0.113 3.887 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.099 0.901 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 5.768 -11.079 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.416 6.416 16 C -0.144 4.144 17 H 0.118 0.882 18 C -0.141 4.141 19 C -0.085 4.085 20 C -0.136 4.136 21 C -0.177 4.177 22 N -0.218 5.218 23 C -0.099 4.099 24 N -0.135 5.135 25 C -0.009 4.009 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.184 0.816 38 H 0.221 0.779 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.366 6.130 -10.670 13.855 hybrid contribution 1.324 -0.654 0.355 1.519 sum -5.042 5.476 -10.316 12.721 Atomic orbital electron populations 1.21840 0.98343 0.98143 1.01130 1.21943 0.92604 0.99784 1.02377 1.18816 0.94282 0.89223 0.80789 0.93216 1.21161 0.90596 1.39475 1.06394 0.92170 1.24874 0.98630 0.94682 0.95341 1.69870 1.35317 1.37306 1.09299 0.86521 0.84770 0.78350 0.77544 1.20172 1.21073 1.20136 1.46576 1.14359 1.55717 1.18669 1.19912 0.83058 0.79739 0.88183 1.90697 1.51212 1.59821 1.39827 1.21676 0.96749 0.97145 0.98834 0.88189 1.21471 0.94195 1.02183 0.96296 1.20280 0.94916 0.97715 0.95586 1.21246 0.86429 1.05272 1.00696 1.21796 0.96798 0.99773 0.99372 1.70480 1.01310 1.26215 1.23812 1.24802 0.99977 0.93929 0.91240 1.45443 1.09312 1.33030 1.25718 1.21933 0.97810 0.92959 0.88242 0.95773 0.93116 0.94413 0.95017 0.88214 0.92405 0.78054 0.90894 0.89355 0.89267 0.89988 0.81564 0.77919 0.88317 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.32 2.24 -69.08 -0.15 6.17 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.71 -12.93 4.92 -54.93 -0.27 -13.20 16 14 C 0.51 8.70 5.71 -10.98 -0.06 8.63 16 15 O -0.54 -11.20 12.97 5.56 0.07 -11.13 16 16 C -0.12 -1.52 2.52 -91.55 -0.23 -1.75 16 17 H 0.10 1.15 8.12 -51.93 -0.42 0.72 16 18 C -0.10 -1.22 4.69 -26.38 -0.12 -1.35 16 19 C -0.05 -0.46 6.32 -27.62 -0.17 -0.63 16 20 C -0.02 -0.26 6.57 -81.73 -0.54 -0.79 16 21 C -0.03 -0.37 11.84 -17.96 -0.21 -0.59 16 22 N -0.50 -6.97 11.27 -14.87 -0.17 -7.14 16 23 C 0.18 2.18 12.66 -90.71 -1.15 1.03 16 24 N -0.45 -5.33 3.13 -114.11 -0.36 -5.69 16 25 C 0.11 1.27 6.12 -3.93 -0.02 1.24 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 28 H 0.04 0.76 5.64 -51.93 -0.29 0.46 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.39 6.07 8.17 -40.82 -0.33 5.74 16 33 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.09 1.10 7.79 -51.93 -0.40 0.70 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.10 0.94 7.85 -51.93 -0.41 0.54 16 40 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -30.12 321.01 -9.06 -39.19 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.89 Total: 7.20 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.89 Total: -5.72 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.17 Total: -49.16 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.12 -9.06 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563202985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.005 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds