Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 H 1.09000 * 109.46889 * 54.99990 * 3 2 1 5 5 C 1.50700 * 109.47362 * 174.99933 * 3 2 1 6 6 H 1.07991 * 119.99913 * 119.99865 * 5 3 2 7 7 C 1.37881 * 119.99585 * 300.00396 * 5 3 2 8 8 N 1.31505 * 120.00245 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99485 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47376 * 59.99868 * 9 7 5 11 11 H 1.48506 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46949 * 299.99691 * 9 7 5 13 13 N 1.46499 * 109.47215 * 295.00354 * 3 2 1 14 14 C 1.34774 * 120.00359 * 85.00072 * 13 3 2 15 15 O 1.21279 * 119.99630 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99936 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.38976 * 59.87168 * 16 14 13 18 18 C 1.53169 * 109.57350 * 179.69921 * 16 14 13 19 19 C 1.53500 * 109.44935 * 189.82341 * 18 16 14 20 20 C 1.50707 * 108.05198 * 311.32805 * 19 18 16 21 21 C 1.33865 * 128.67981 * 195.85771 * 20 19 18 22 22 N 1.34417 * 107.79933 * 179.84647 * 21 20 19 23 23 C 1.30789 * 109.32503 * 0.02562 * 22 21 20 24 24 N 1.34411 * 108.55001 * 0.03903 * 23 22 21 25 25 C 1.46470 * 128.44479 * 179.88227 * 24 23 22 26 26 H 1.08999 * 109.47509 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47169 * 300.00139 * 1 2 3 28 28 H 1.09007 * 109.47273 * 59.99498 * 1 2 3 29 29 H 1.09006 * 109.46872 * 240.00391 * 2 1 3 30 30 H 1.08996 * 109.47076 * 120.00029 * 2 1 3 31 31 H 0.97001 * 120.00293 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99713 * 264.99109 * 13 3 2 33 33 H 1.09000 * 109.39295 * 69.85365 * 18 16 14 34 34 H 1.09007 * 109.49839 * 309.85568 * 18 16 14 35 35 H 1.09005 * 109.74715 * 191.68602 * 19 18 16 36 36 H 1.09004 * 109.78694 * 70.98554 * 19 18 16 37 37 H 1.08003 * 126.09382 * 359.86318 * 21 20 19 38 38 H 1.07996 * 125.72805 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.60021 * 317.03754 * 25 24 23 40 40 H 1.08997 * 109.59775 * 77.35404 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1732 9 14 6.0050 0.8799 1.3812 10 1 6.5004 2.2798 1.3809 11 1 6.3978 0.2166 2.6504 12 1 6.5966 0.1451 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3669 15 8 -0.3395 2.6320 -0.4343 16 6 0.0363 3.3378 -2.6548 17 1 0.0699 2.6125 -3.4678 18 6 -1.3869 3.8893 -2.5262 19 6 -1.8817 4.3530 -3.9033 20 6 -0.8100 5.2158 -4.5184 21 6 -0.9061 6.0578 -5.5546 22 7 0.3029 6.6129 -5.7465 23 6 1.1419 6.1396 -4.8617 24 7 0.4884 5.2649 -4.0780 25 6 1.0094 4.4831 -2.9543 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8291 -0.0605 2.9502 32 1 2.2719 2.1233 -1.9977 33 1 -1.3870 4.7332 -1.8364 34 1 -2.0465 3.1089 -2.1465 35 1 -2.7993 4.9304 -3.7897 36 1 -2.0677 3.4875 -4.5393 37 1 -1.7964 6.2558 -6.1331 38 1 2.1847 6.4067 -4.7755 39 1 1.9863 4.0753 -3.2144 40 1 1.1020 5.1220 -2.0761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563202985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = -8.716208 kcal Electronic energy + Delta-G solvation = -21871.759480 eV Core-core repulsion = 18686.055927 eV Total energy + Delta-G solvation = -3185.703554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.27895 -40.93870 -37.59900 -36.66043 -34.39265 -33.89345 -32.94478 -31.46905 -29.16267 -28.49770 -25.84768 -25.00517 -23.68321 -22.36041 -21.86928 -21.12093 -20.06076 -18.96384 -18.07486 -17.48976 -17.12386 -16.71455 -16.33010 -16.03796 -15.32504 -15.00289 -14.94413 -14.87385 -14.56791 -14.52512 -14.02883 -13.79740 -13.42827 -13.18264 -12.99268 -12.86552 -12.70029 -12.63547 -12.18874 -12.18072 -11.99360 -11.92705 -11.57343 -11.05486 -10.95666 -10.65788 -10.49363 -10.49284 -9.65022 -9.25602 -8.15530 -6.32592 1.13981 1.46214 1.46732 1.54387 1.62679 1.91532 2.20948 2.34466 2.58353 3.14541 3.35646 3.58645 3.66274 3.79149 3.95297 4.17543 4.21781 4.28843 4.38974 4.49136 4.50356 4.58374 4.66201 4.76648 4.83367 4.94864 5.07668 5.09193 5.19710 5.27849 5.44088 5.45574 5.56600 5.61629 5.80069 5.82633 5.91803 6.17944 6.28161 6.75570 6.95276 7.12782 7.34247 7.54943 8.89311 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.004479 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.249400 B = 6249.336330 C = 7218.298092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.702 5.702 14 C 0.509 3.491 15 O -0.577 6.577 16 C -0.107 4.107 17 H 0.121 0.879 18 C -0.101 4.101 19 C -0.036 4.036 20 C -0.029 4.029 21 C -0.045 4.045 22 N -0.534 5.534 23 C 0.180 3.820 24 N -0.454 5.454 25 C 0.117 3.883 26 H 0.043 0.957 27 H 0.025 0.975 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.183 0.817 38 H 0.232 0.768 39 H 0.120 0.880 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 5.958 -13.102 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.350 5.350 14 C 0.295 3.705 15 O -0.457 6.457 16 C -0.129 4.129 17 H 0.139 0.861 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.191 4.191 22 N -0.253 5.253 23 C -0.101 4.101 24 N -0.138 5.138 25 C -0.005 4.005 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.200 0.800 38 H 0.248 0.752 39 H 0.138 0.862 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.796 6.337 -12.741 15.365 hybrid contribution 1.098 -0.674 0.994 1.627 sum -4.698 5.663 -11.746 13.861 Atomic orbital electron populations 1.21681 0.96914 0.99138 1.00347 1.21799 0.93803 0.99315 1.01270 1.18354 0.93548 0.89121 0.81447 0.98183 1.21554 0.91490 1.38889 1.06614 0.90818 1.25715 1.02937 0.94470 0.95152 1.70031 1.37046 1.38363 1.09847 0.85496 0.79562 0.78429 0.77435 1.19635 1.21554 1.19016 1.46294 1.15408 1.55761 1.17576 1.20629 0.81886 0.78755 0.89277 1.90690 1.52218 1.61011 1.41778 1.21548 0.97369 0.97707 0.96261 0.86093 1.21436 0.93714 1.01333 0.97415 1.20300 0.94842 0.98255 0.94045 1.21561 0.86811 1.05365 1.00624 1.22164 0.97108 0.99894 0.99983 1.70476 1.02294 1.27401 1.25085 1.25387 1.00966 0.93282 0.90506 1.45485 1.09441 1.33137 1.25697 1.21896 0.98259 0.92290 0.88057 0.93791 0.95564 0.93443 0.94054 0.91208 0.92689 0.76150 0.92443 0.90073 0.87546 0.88228 0.79951 0.75228 0.86182 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.51 71.98 0.61 -4.59 16 2 C -0.12 -5.70 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.20 2.24 44.24 0.10 13.30 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 5 C -0.55 -27.04 8.73 25.60 0.22 -26.82 16 6 H 0.07 3.35 7.74 -2.92 -0.02 3.33 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -50.51 11.29 21.45 0.24 -50.27 16 9 Si 0.97 40.29 29.54 68.60 2.03 42.32 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -25.07 4.92 -446.10 -2.20 -27.27 16 14 C 0.51 17.02 5.71 87.66 0.50 17.52 16 15 O -0.58 -24.32 12.97 -3.03 -0.04 -24.36 16 16 C -0.11 -2.45 2.52 -11.40 -0.03 -2.48 16 17 H 0.12 2.35 8.12 -2.39 -0.02 2.33 16 18 C -0.10 -2.22 4.69 30.82 0.14 -2.08 16 19 C -0.04 -0.61 6.32 30.02 0.19 -0.42 16 20 C -0.03 -0.62 6.57 40.73 0.27 -0.35 16 21 C -0.05 -1.04 11.84 83.30 0.99 -0.05 16 22 N -0.53 -13.96 11.27 -200.97 -2.26 -16.23 16 23 C 0.18 3.89 12.66 180.38 2.28 6.18 16 24 N -0.45 -9.63 3.13 -514.92 -1.61 -11.24 16 25 C 0.12 2.35 6.12 86.47 0.53 2.88 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.20 7.85 -2.39 -0.02 1.18 16 28 H 0.05 1.87 5.64 -2.38 -0.01 1.86 16 29 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.07 3.69 5.95 -2.39 -0.01 3.68 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.40 11.78 8.17 -92.71 -0.76 11.03 16 33 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.08 1.93 7.79 -2.38 -0.02 1.91 16 35 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.23 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.12 1.90 7.85 -2.39 -0.02 1.88 16 40 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 Total: -1.00 -66.28 321.01 2.86 -63.42 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.29 Total: 24.72 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.42 Total: -1.09 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.83 Total: -105.00 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.04 Total: -24.36 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -66.28 2.86 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563202985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.699 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds