Wall clock time and date at job start Mon Mar 30 2020 02:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 H 1.09008 * 109.47175 * 181.70023 * 3 2 1 5 5 C 1.50697 * 109.47260 * 61.69963 * 3 2 1 6 6 H 1.08004 * 119.99781 * 245.16435 * 5 3 2 7 7 C 1.37876 * 119.99993 * 65.15592 * 5 3 2 8 8 N 1.31513 * 120.00010 * 10.20509 * 7 5 3 9 9 Si 1.86807 * 120.00069 * 190.20694 * 7 5 3 10 10 H 1.48506 * 109.46888 * 270.00253 * 9 7 5 11 11 H 1.48500 * 109.46857 * 29.99789 * 9 7 5 12 12 H 1.48494 * 109.47338 * 150.00174 * 9 7 5 13 13 N 1.46899 * 109.46955 * 301.69857 * 3 2 1 14 14 C 1.46905 * 111.00181 * 274.41351 * 13 3 2 15 15 C 1.52991 * 109.47177 * 184.27930 * 14 13 3 16 16 C 1.50699 * 109.47091 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00102 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.39952 * 119.99736 * 184.57324 * 18 16 15 20 20 C 1.39277 * 120.49174 * 325.16666 * 19 18 16 21 21 C 1.38505 * 118.36210 * 179.76001 * 20 19 18 22 22 C 1.38270 * 119.23239 * 0.54162 * 21 20 19 23 23 N 1.31850 * 120.92182 * 359.69521 * 22 21 20 24 24 C 1.31824 * 121.79508 * 0.03090 * 23 22 21 25 25 H 1.08999 * 109.46940 * 63.23076 * 1 2 3 26 26 H 1.09005 * 109.47061 * 183.22551 * 1 2 3 27 27 H 1.09002 * 109.47010 * 303.22908 * 1 2 3 28 28 H 1.09004 * 109.47428 * 239.99730 * 2 1 3 29 29 H 1.09003 * 109.47769 * 120.00012 * 2 1 3 30 30 H 0.97000 * 120.00182 * 358.45155 * 8 7 5 31 31 H 1.00894 * 110.99999 * 150.46410 * 13 3 2 32 32 H 1.08999 * 109.46949 * 304.28251 * 14 13 3 33 33 H 1.09000 * 109.46607 * 64.27744 * 14 13 3 34 34 H 1.08999 * 109.47443 * 300.00019 * 15 14 13 35 35 H 1.09000 * 109.47504 * 60.00364 * 15 14 13 36 36 H 0.96997 * 119.99605 * 4.57213 * 18 16 15 37 37 H 1.08002 * 120.81822 * 0.02562 * 20 19 18 38 38 H 1.08003 * 120.38177 * 180.25751 * 21 20 19 39 39 H 1.08007 * 119.53670 * 179.72266 * 22 21 20 40 40 H 1.07999 * 119.66694 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 -0.0305 5 6 1.5724 2.1407 1.2510 6 1 0.8822 2.9685 1.1815 7 6 2.0255 1.7225 2.4842 8 7 3.0112 0.8555 2.5632 9 14 1.2394 2.3876 4.0428 10 1 1.9550 3.6157 4.4729 11 1 -0.1856 2.7118 3.7790 12 1 1.3239 1.3642 5.1154 13 7 1.5171 2.1467 -1.1784 14 6 2.3759 1.9237 -2.3492 15 6 1.8609 2.7555 -3.5254 16 6 2.7416 2.5261 -4.7266 17 8 3.6884 1.7720 -4.6493 18 7 2.4778 3.1599 -5.8865 19 6 3.2362 2.8750 -7.0276 20 6 4.5921 2.5761 -6.9186 21 6 5.2994 2.2962 -8.0761 22 6 4.6444 2.3333 -9.2932 23 7 3.3604 2.6247 -9.3631 24 6 2.6493 2.8920 -8.2858 25 1 -0.3633 0.4629 -0.9175 26 1 -0.3633 -1.0261 0.0578 27 1 -0.3633 0.5632 0.8596 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4044 0.4930 1.7539 31 1 1.4088 3.1324 -0.9920 32 1 3.3972 2.2221 -2.1127 33 1 2.3588 0.8670 -2.6162 34 1 0.8396 2.4570 -3.7619 35 1 1.8780 3.8121 -3.2583 36 1 1.7623 3.8133 -5.9302 37 1 5.0791 2.5588 -5.9547 38 1 6.3513 2.0561 -8.0289 39 1 5.1922 2.1202 -10.1994 40 1 1.5996 3.1269 -8.3829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565723643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:22 Heat of formation + Delta-G solvation = -9.989145 kcal Electronic energy + Delta-G solvation = -20700.752477 eV Core-core repulsion = 17514.993725 eV Total energy + Delta-G solvation = -3185.758752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03325 -39.41600 -36.68653 -35.31954 -33.55258 -32.39688 -31.34372 -30.49015 -29.03930 -25.69554 -24.19560 -23.71694 -23.39898 -22.11469 -20.50025 -19.34947 -18.20590 -17.21875 -17.15868 -16.85642 -16.31702 -15.58087 -14.64753 -14.53787 -14.25768 -13.99863 -13.87007 -13.75445 -13.33155 -13.25995 -12.90274 -12.48219 -12.38656 -11.63031 -11.35809 -11.23180 -11.12591 -11.05612 -10.79858 -10.34100 -10.14125 -10.08787 -9.97401 -9.93442 -9.73292 -9.53788 -8.61917 -8.60432 -8.25416 -7.45004 -6.38752 -4.08569 0.75643 1.03082 2.39053 2.70996 3.40570 3.45611 3.56277 3.60686 4.20037 4.43108 4.50784 4.59393 4.71703 4.84086 5.01218 5.08449 5.16824 5.31553 5.35038 5.56283 5.65497 5.77004 5.92498 5.97297 6.20406 6.27939 6.39022 6.42483 6.51228 6.60316 6.97261 7.01996 7.04800 7.23113 7.47208 7.51602 7.65950 7.82942 7.88796 8.05458 8.47589 8.54862 8.84481 9.62440 10.99034 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002861 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.058962 B = 9782.778057 C = 9872.448038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C 0.205 3.795 4 H -0.006 1.006 5 C -0.598 4.598 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.074 3.926 15 C -0.135 4.135 16 C 0.517 3.483 17 O -0.516 6.516 18 N -0.675 5.675 19 C 0.100 3.900 20 C -0.081 4.081 21 C -0.152 4.152 22 C 0.075 3.925 23 N -0.468 5.468 24 C 0.073 3.927 25 H 0.047 0.953 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.058 0.942 30 H 0.271 0.729 31 H 0.332 0.668 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.414 0.586 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 5.930 -19.704 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C 0.097 3.903 4 H 0.011 0.989 5 C -0.636 4.636 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.544 5.544 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.175 4.175 16 C 0.305 3.695 17 O -0.390 6.390 18 N -0.321 5.321 19 C 0.003 3.997 20 C -0.109 4.109 21 C -0.172 4.172 22 C -0.083 4.083 23 N -0.176 5.176 24 C -0.087 4.087 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.251 0.749 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.577 4.800 -18.879 19.488 hybrid contribution 0.791 0.872 -0.688 1.363 sum 0.214 5.672 -19.567 20.374 Atomic orbital electron populations 1.21425 0.96503 0.97805 1.01942 1.21494 0.96253 0.98305 0.98474 1.19237 0.92353 0.91306 0.87410 0.98866 1.21945 1.31057 1.18861 0.91755 0.92792 1.25719 0.94935 0.95884 1.01630 1.70763 1.21222 1.29584 1.32854 0.83569 0.75536 0.75924 0.75340 1.21661 1.21344 1.20983 1.60644 1.49768 1.15658 1.05043 1.21664 0.94684 0.99432 0.89888 1.21705 1.00041 1.03125 0.92665 1.21230 0.85505 0.78860 0.83873 1.90713 1.29200 1.35749 1.83342 1.43610 1.36579 1.43459 1.08489 1.18889 0.91640 1.01229 0.87921 1.21833 0.92152 0.96485 1.00443 1.22131 1.01688 1.00543 0.92867 1.22714 0.90658 0.97215 0.97678 1.67634 1.07952 1.10632 1.31430 1.22607 0.99998 0.99460 0.86625 0.93390 0.96360 0.92184 0.96217 0.92333 0.91743 0.85058 0.95399 0.91133 0.87679 0.88674 0.74923 0.83205 0.84416 0.82630 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.52 37.16 0.35 -2.23 16 2 C -0.11 -2.53 5.50 -26.73 -0.15 -2.67 16 3 C 0.21 5.01 1.93 -68.87 -0.13 4.88 16 4 H -0.01 -0.17 7.04 -51.92 -0.37 -0.53 16 5 C -0.60 -15.94 7.25 -34.44 -0.25 -16.19 16 6 H 0.05 1.43 7.68 -52.48 -0.40 1.03 16 7 C 0.02 0.65 5.18 -17.82 -0.09 0.56 16 8 N -0.91 -26.84 13.01 55.43 0.72 -26.11 16 9 Si 1.07 24.63 29.92 -169.99 -5.09 19.55 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -13.57 5.56 -107.95 -0.60 -14.17 16 14 C 0.07 1.28 4.82 -3.83 -0.02 1.26 16 15 C -0.14 -1.63 5.92 -27.89 -0.17 -1.80 16 16 C 0.52 6.54 7.69 -10.98 -0.08 6.45 16 17 O -0.52 -8.54 13.46 5.55 0.07 -8.47 16 18 N -0.67 -6.34 5.35 -9.76 -0.05 -6.39 16 19 C 0.10 1.07 6.32 -83.54 -0.53 0.54 16 20 C -0.08 -0.93 8.81 -39.10 -0.34 -1.28 16 21 C -0.15 -1.43 10.10 -39.47 -0.40 -1.83 16 22 C 0.07 0.70 11.18 -17.53 -0.20 0.50 16 23 N -0.47 -5.07 10.35 -13.09 -0.14 -5.21 16 24 C 0.07 0.72 11.12 -17.33 -0.19 0.52 16 25 H 0.05 0.98 7.66 -51.93 -0.40 0.58 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.39 7.16 -51.93 -0.37 1.02 16 28 H 0.02 0.43 7.62 -51.93 -0.40 0.04 16 29 H 0.06 1.52 6.45 -51.93 -0.33 1.19 16 30 H 0.27 8.05 6.12 -40.82 -0.25 7.80 16 31 H 0.33 6.39 8.18 -39.29 -0.32 6.07 16 32 H 0.03 0.54 7.91 -51.93 -0.41 0.12 16 33 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.41 2.38 8.82 -40.82 -0.36 2.02 16 37 H 0.15 1.93 6.31 -52.49 -0.33 1.60 16 38 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -32.52 331.43 -7.95 -40.47 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.67 Total: 6.63 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.20 Total: -11.29 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.07 Total: -51.88 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.09 Total: 19.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.52 -7.95 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565723643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.479 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds