Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 H 1.09008 * 109.47175 * 181.70023 * 3 2 1 5 5 C 1.50697 * 109.47260 * 61.69963 * 3 2 1 6 6 H 1.08004 * 119.99781 * 245.16435 * 5 3 2 7 7 C 1.37876 * 119.99993 * 65.15592 * 5 3 2 8 8 N 1.31513 * 120.00010 * 10.20509 * 7 5 3 9 9 Si 1.86807 * 120.00069 * 190.20694 * 7 5 3 10 10 H 1.48506 * 109.46888 * 270.00253 * 9 7 5 11 11 H 1.48500 * 109.46857 * 29.99789 * 9 7 5 12 12 H 1.48494 * 109.47338 * 150.00174 * 9 7 5 13 13 N 1.46899 * 109.46955 * 301.69857 * 3 2 1 14 14 C 1.46905 * 111.00181 * 274.41351 * 13 3 2 15 15 C 1.52991 * 109.47177 * 184.27930 * 14 13 3 16 16 C 1.50699 * 109.47091 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00102 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.39952 * 119.99736 * 184.57324 * 18 16 15 20 20 C 1.39277 * 120.49174 * 325.16666 * 19 18 16 21 21 C 1.38505 * 118.36210 * 179.76001 * 20 19 18 22 22 C 1.38270 * 119.23239 * 0.54162 * 21 20 19 23 23 N 1.31850 * 120.92182 * 359.69521 * 22 21 20 24 24 C 1.31824 * 121.79508 * 0.03090 * 23 22 21 25 25 H 1.08999 * 109.46940 * 63.23076 * 1 2 3 26 26 H 1.09005 * 109.47061 * 183.22551 * 1 2 3 27 27 H 1.09002 * 109.47010 * 303.22908 * 1 2 3 28 28 H 1.09004 * 109.47428 * 239.99730 * 2 1 3 29 29 H 1.09003 * 109.47769 * 120.00012 * 2 1 3 30 30 H 0.97000 * 120.00182 * 358.45155 * 8 7 5 31 31 H 1.00894 * 110.99999 * 150.46410 * 13 3 2 32 32 H 1.08999 * 109.46949 * 304.28251 * 14 13 3 33 33 H 1.09000 * 109.46607 * 64.27744 * 14 13 3 34 34 H 1.08999 * 109.47443 * 300.00019 * 15 14 13 35 35 H 1.09000 * 109.47504 * 60.00364 * 15 14 13 36 36 H 0.96997 * 119.99605 * 4.57213 * 18 16 15 37 37 H 1.08002 * 120.81822 * 0.02562 * 20 19 18 38 38 H 1.08003 * 120.38177 * 180.25751 * 21 20 19 39 39 H 1.08007 * 119.53670 * 179.72266 * 22 21 20 40 40 H 1.07999 * 119.66694 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 -0.0305 5 6 1.5724 2.1407 1.2510 6 1 0.8822 2.9685 1.1815 7 6 2.0255 1.7225 2.4842 8 7 3.0112 0.8555 2.5632 9 14 1.2394 2.3876 4.0428 10 1 1.9550 3.6157 4.4729 11 1 -0.1856 2.7118 3.7790 12 1 1.3239 1.3642 5.1154 13 7 1.5171 2.1467 -1.1784 14 6 2.3759 1.9237 -2.3492 15 6 1.8609 2.7555 -3.5254 16 6 2.7416 2.5261 -4.7266 17 8 3.6884 1.7720 -4.6493 18 7 2.4778 3.1599 -5.8865 19 6 3.2362 2.8750 -7.0276 20 6 4.5921 2.5761 -6.9186 21 6 5.2994 2.2962 -8.0761 22 6 4.6444 2.3333 -9.2932 23 7 3.3604 2.6247 -9.3631 24 6 2.6493 2.8920 -8.2858 25 1 -0.3633 0.4629 -0.9175 26 1 -0.3633 -1.0261 0.0578 27 1 -0.3633 0.5632 0.8596 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4044 0.4930 1.7539 31 1 1.4088 3.1324 -0.9920 32 1 3.3972 2.2221 -2.1127 33 1 2.3588 0.8670 -2.6162 34 1 0.8396 2.4570 -3.7619 35 1 1.8780 3.8121 -3.2583 36 1 1.7623 3.8133 -5.9302 37 1 5.0791 2.5588 -5.9547 38 1 6.3513 2.0561 -8.0289 39 1 5.1922 2.1202 -10.1994 40 1 1.5996 3.1269 -8.3829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565723643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -33.152350 kcal Electronic energy + Delta-G solvation = -20701.756909 eV Core-core repulsion = 17514.993725 eV Total energy + Delta-G solvation = -3186.763184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89838 -40.33328 -38.45473 -36.25808 -35.21975 -33.31387 -33.01954 -31.65761 -30.28259 -27.50580 -25.48330 -25.08853 -24.57554 -23.31736 -21.50671 -21.24496 -19.23683 -18.71700 -18.16444 -17.85170 -17.27502 -16.71305 -15.95754 -15.95286 -15.70622 -15.53172 -15.12117 -14.88893 -14.77169 -14.36951 -14.19723 -14.08299 -13.33696 -13.15663 -13.14287 -12.78519 -12.65949 -12.46963 -12.01368 -11.92440 -11.88148 -11.80093 -11.60091 -11.31203 -10.74425 -10.65701 -10.39359 -10.32900 -9.41216 -9.20621 -8.59049 -6.29093 -0.00570 0.22976 1.43296 1.55289 1.63985 1.80936 1.84786 2.58789 2.81194 3.22160 3.37255 3.58785 3.71314 3.83594 3.93384 4.02585 4.08368 4.21690 4.35768 4.42235 4.54364 4.58655 4.65082 4.73759 4.89301 4.90211 5.01472 5.07338 5.15207 5.19958 5.21270 5.37629 5.52497 5.69551 5.73672 5.88396 6.07525 6.25798 6.47103 6.57941 6.81813 6.91208 7.00050 7.51511 8.78530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040922 B = 0.002861 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.058962 B = 9782.778057 C = 9872.448038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.103 4.103 3 C 0.207 3.793 4 H -0.047 1.047 5 C -0.598 4.598 6 H 0.058 0.942 7 C -0.028 4.028 8 N -0.937 5.937 9 Si 1.114 2.886 10 H -0.277 1.277 11 H -0.266 1.266 12 H -0.289 1.289 13 N -0.667 5.667 14 C 0.078 3.922 15 C -0.120 4.120 16 C 0.518 3.482 17 O -0.564 6.564 18 N -0.653 5.653 19 C 0.085 3.915 20 C -0.104 4.104 21 C -0.153 4.153 22 C 0.075 3.925 23 N -0.488 5.488 24 C 0.077 3.923 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.256 0.744 31 H 0.339 0.661 32 H 0.002 0.998 33 H 0.051 0.949 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.434 0.566 37 H 0.129 0.871 38 H 0.158 0.842 39 H 0.185 0.815 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 7.287 -21.223 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C 0.098 3.902 4 H -0.030 1.030 5 C -0.636 4.636 6 H 0.077 0.923 7 C -0.226 4.226 8 N -0.575 5.575 9 Si 0.936 3.064 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.215 1.215 13 N -0.298 5.298 14 C -0.052 4.052 15 C -0.160 4.160 16 C 0.307 3.693 17 O -0.441 6.441 18 N -0.301 5.301 19 C -0.012 4.012 20 C -0.132 4.132 21 C -0.173 4.173 22 C -0.082 4.082 23 N -0.196 5.196 24 C -0.083 4.083 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.274 0.726 37 H 0.147 0.853 38 H 0.176 0.824 39 H 0.202 0.798 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.601 6.206 -20.454 21.533 hybrid contribution 1.468 0.449 -0.339 1.572 sum -1.133 6.655 -20.793 21.862 Atomic orbital electron populations 1.21311 0.94311 0.99074 1.01841 1.21398 0.98042 0.97437 0.97298 1.19073 0.89999 0.92336 0.88803 1.03002 1.22241 1.30220 1.18595 0.92535 0.92345 1.27121 0.94671 0.95585 1.05269 1.70887 1.23026 1.31505 1.32042 0.82981 0.75944 0.75629 0.71837 1.20296 1.19068 1.21489 1.60547 1.49455 1.15736 1.04030 1.21563 0.93309 0.99439 0.90892 1.21544 1.00621 1.03664 0.90123 1.21262 0.84837 0.78432 0.84728 1.90714 1.31187 1.38072 1.84150 1.43318 1.36551 1.43006 1.07236 1.19008 0.91541 1.02088 0.88558 1.21874 0.93139 0.97836 1.00347 1.22372 1.02722 0.99896 0.92331 1.23203 0.90448 0.95973 0.98597 1.67711 1.08725 1.11331 1.31876 1.22998 1.01131 0.98333 0.85796 0.91863 0.94282 0.93872 0.95576 0.95346 0.93380 0.84300 0.97974 0.93075 0.85128 0.85791 0.72594 0.85312 0.82396 0.79814 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.52 71.98 0.69 -3.85 16 2 C -0.10 -4.96 5.50 30.59 0.17 -4.79 16 3 C 0.21 10.34 1.93 44.17 0.09 10.42 16 4 H -0.05 -2.73 7.04 -2.38 -0.02 -2.74 16 5 C -0.60 -31.96 7.25 25.60 0.19 -31.78 16 6 H 0.06 3.03 7.68 -2.91 -0.02 3.00 16 7 C -0.03 -1.55 5.18 84.65 0.44 -1.11 16 8 N -0.94 -57.03 13.01 21.45 0.28 -56.75 16 9 Si 1.11 49.16 29.92 68.60 2.05 51.21 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.67 -26.21 5.56 -495.44 -2.75 -28.96 16 14 C 0.08 2.73 4.82 86.30 0.42 3.15 16 15 C -0.12 -2.65 5.92 29.84 0.18 -2.47 16 16 C 0.52 12.62 7.69 87.66 0.67 13.30 16 17 O -0.56 -19.15 13.46 -3.06 -0.04 -19.19 16 18 N -0.65 -11.07 5.35 -303.19 -1.62 -12.69 16 19 C 0.08 1.71 6.32 38.24 0.24 1.95 16 20 C -0.10 -2.38 8.81 22.58 0.20 -2.18 16 21 C -0.15 -2.74 10.10 22.34 0.23 -2.52 16 22 C 0.07 1.25 11.18 84.70 0.95 2.20 16 23 N -0.49 -9.59 10.35 -195.32 -2.02 -11.61 16 24 C 0.08 1.34 11.12 84.84 0.94 2.29 16 25 H 0.06 2.43 7.66 -2.39 -0.02 2.42 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.94 7.16 -2.39 -0.02 1.92 16 28 H 0.03 1.18 7.62 -2.38 -0.02 1.17 16 29 H 0.03 1.52 6.45 -2.39 -0.02 1.50 16 30 H 0.26 15.99 6.12 -92.71 -0.57 15.42 16 31 H 0.34 12.56 8.18 -89.70 -0.73 11.83 16 32 H 0.00 0.08 7.91 -2.39 -0.02 0.06 16 33 H 0.05 1.98 7.57 -2.39 -0.02 1.96 16 34 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.43 3.66 8.82 -92.71 -0.82 2.84 16 37 H 0.13 3.50 6.31 -2.91 -0.02 3.48 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -73.05 331.43 0.99 -72.07 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.29 Total: 21.33 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 5.39 Total: -15.41 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -6.12 Total: -110.01 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.04 Total: -19.19 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Total: -73.05 0.99 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565723643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.915 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds