Wall clock time and date at job start Mon Mar 30 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08999 * 109.47447 * 305.69240 * 3 2 1 5 5 C 1.50702 * 109.46990 * 185.69578 * 3 2 1 6 6 H 1.08004 * 120.00068 * 239.99821 * 5 3 2 7 7 C 1.37877 * 119.99970 * 60.00006 * 5 3 2 8 8 N 1.31513 * 119.99964 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99776 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47404 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47029 * 119.99986 * 9 7 5 12 12 H 1.48492 * 109.47140 * 239.99971 * 9 7 5 13 13 N 1.46909 * 109.47207 * 65.69624 * 3 2 1 14 14 C 1.46896 * 110.99636 * 260.90990 * 13 3 2 15 15 H 1.08989 * 109.25724 * 20.89969 * 14 13 3 16 16 C 1.52730 * 109.25510 * 140.33585 * 14 13 3 17 17 C 1.53331 * 108.37418 * 171.38872 * 16 14 13 18 18 C 1.52730 * 108.38581 * 290.08813 * 17 16 14 19 19 C 1.50648 * 110.60165 * 51.03436 * 18 17 16 20 20 C 1.38922 * 117.72360 * 162.49689 * 19 18 17 21 21 C 1.37887 * 120.58566 * 179.81792 * 20 19 18 22 22 C 1.38490 * 119.74713 * 359.93299 * 21 20 19 23 23 F 1.35093 * 120.14787 * 180.14354 * 22 21 20 24 24 C 1.38160 * 119.70868 * 0.12336 * 22 21 20 25 25 C 1.37678 * 122.55671 * 342.45310 * 19 18 17 26 26 H 1.08992 * 109.46914 * 175.41108 * 1 2 3 27 27 H 1.09000 * 109.46692 * 295.40804 * 1 2 3 28 28 H 1.08994 * 109.46656 * 55.40222 * 1 2 3 29 29 H 1.09003 * 109.46840 * 240.00031 * 2 1 3 30 30 H 1.08997 * 109.46779 * 120.00225 * 2 1 3 31 31 H 0.97001 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99505 * 136.95621 * 13 3 2 33 33 H 1.09001 * 109.68297 * 51.66567 * 16 14 13 34 34 H 1.08998 * 109.68295 * 291.10460 * 16 14 13 35 35 H 1.08995 * 109.68311 * 170.36189 * 17 16 14 36 36 H 1.09001 * 109.67956 * 49.80797 * 17 16 14 37 37 H 1.08999 * 109.24929 * 171.32223 * 18 17 16 38 38 H 1.08993 * 109.25390 * 290.74237 * 18 17 16 39 39 H 1.08003 * 119.70919 * 359.75958 * 20 19 18 40 40 H 1.07998 * 120.13291 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.73463 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1410 6 1 4.1547 1.8862 0.6299 7 6 4.1291 0.8833 -1.2542 8 7 3.3812 0.3462 -2.1933 9 14 5.9889 0.8869 -1.4293 10 1 6.5963 1.5470 -0.2459 11 1 6.4800 -0.5116 -1.5218 12 1 6.3689 1.6272 -2.6591 13 7 1.6659 2.0942 1.2623 14 6 0.4643 2.9218 1.0914 15 1 -0.0798 2.5874 0.2082 16 6 -0.4302 2.7709 2.3201 17 6 -1.5635 3.7990 2.2221 18 6 -0.9699 5.1913 2.4267 19 6 0.2124 5.4023 1.5173 20 6 0.6357 6.7075 1.3000 21 6 1.7142 6.9682 0.4813 22 6 2.3828 5.9201 -0.1290 23 9 3.4422 6.1660 -0.9304 24 6 1.9618 4.6218 0.0856 25 6 0.8736 4.3599 0.9078 26 1 -0.3633 -1.0243 -0.0822 27 1 -0.3633 0.4409 0.9283 28 1 -0.3632 0.5835 -0.8459 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7954 -0.0491 -2.9763 32 1 2.4317 2.6397 1.6284 33 1 0.1529 2.9521 3.2231 34 1 -0.8486 1.7648 2.3483 35 1 -2.3073 3.6000 2.9936 36 1 -2.0291 3.7394 1.2384 37 1 -1.7298 5.9415 2.2081 38 1 -0.6495 5.2966 3.4631 39 1 0.1149 7.5254 1.7757 40 1 2.0368 7.9857 0.3171 41 1 2.4832 3.8041 -0.3898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:08 Heat of formation + Delta-G solvation = -40.672767 kcal Electronic energy + Delta-G solvation = -22355.857416 eV Core-core repulsion = 19148.848160 eV Total energy + Delta-G solvation = -3207.009256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.48769 -39.94894 -36.56945 -35.18883 -32.89720 -31.41433 -29.83428 -29.69277 -28.14735 -25.75250 -23.22294 -22.77247 -22.39660 -21.33044 -19.59878 -19.23777 -17.31065 -16.38653 -16.13114 -15.51400 -15.20115 -14.95948 -14.48615 -14.29275 -13.85203 -13.54336 -13.35102 -12.93511 -12.79812 -12.53452 -12.37082 -12.29751 -12.01802 -11.55160 -11.27404 -11.13833 -11.02258 -10.92818 -10.79025 -10.62795 -10.45295 -10.20520 -10.05988 -9.63402 -9.41339 -8.84852 -8.71064 -8.45420 -8.19255 -7.29953 -6.06416 -4.14723 1.41752 1.49002 3.27474 3.35983 3.39858 3.80527 4.38082 4.56097 4.78807 4.84666 5.01810 5.17220 5.21751 5.26204 5.35386 5.45437 5.51815 5.74147 5.83939 5.89478 5.98467 6.08002 6.10712 6.19367 6.28045 6.33986 6.41083 6.47256 6.51425 6.59184 6.62629 6.67626 6.89154 7.06705 7.11817 7.24233 7.42256 7.54143 7.74768 7.89259 8.23563 8.34872 8.61889 8.97995 9.52452 10.97943 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.007369 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.261998 B = 3799.041520 C = 5298.507332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.010 0.990 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.124 3.876 15 H 0.084 0.916 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.075 4.075 19 C -0.089 4.089 20 C -0.103 4.103 21 C -0.162 4.162 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.147 4.147 25 C -0.066 4.066 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 9.487 7.127 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.028 0.972 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.309 5.309 14 C 0.013 3.987 15 H 0.102 0.898 16 C -0.142 4.142 17 C -0.160 4.160 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.181 4.181 22 C 0.073 3.927 23 F -0.120 7.120 24 C -0.166 4.166 25 C -0.068 4.068 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.893 8.824 7.143 14.421 hybrid contribution 1.719 0.875 -0.964 2.156 sum -7.175 9.699 6.178 13.554 Atomic orbital electron populations 1.21874 0.99670 0.98835 0.99897 1.21543 0.91492 0.99525 1.01923 1.19263 0.94351 0.91291 0.84339 0.97211 1.21449 0.91498 1.38648 1.05118 0.92261 1.24900 0.98104 0.94916 0.95678 1.69892 1.34745 1.38271 1.09275 0.86548 0.85717 0.77744 0.78108 1.19723 1.20937 1.21020 1.60909 1.05984 1.32254 1.31730 1.20646 0.94075 0.85876 0.98073 0.89843 1.21568 0.95572 0.98701 0.98328 1.21593 0.98070 0.94397 1.01908 1.20422 0.94575 0.97942 0.98237 1.19690 0.97826 0.92397 0.99053 1.20891 0.96513 0.96321 0.98392 1.20975 0.98142 0.98378 1.00568 1.17653 0.87009 0.94173 0.93887 1.91488 1.54165 1.95076 1.71308 1.21828 0.98310 0.96589 0.99860 1.20486 0.94072 0.97227 0.94983 0.95306 0.93506 0.94607 0.89270 0.94394 0.92886 0.84619 0.91660 0.91054 0.91635 0.91810 0.91248 0.90826 0.85776 0.85441 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.72 37.16 0.32 -2.55 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.21 5.09 1.03 -68.86 -0.07 5.02 16 4 H 0.01 0.27 6.73 -51.93 -0.35 -0.08 16 5 C -0.53 -13.88 7.80 -34.44 -0.27 -14.15 16 6 H 0.06 1.56 7.43 -52.48 -0.39 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.97 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 N -0.68 -13.65 5.70 -102.35 -0.58 -14.24 16 14 C 0.12 2.13 1.52 -69.03 -0.10 2.03 16 15 H 0.08 1.56 6.23 -51.94 -0.32 1.24 16 16 C -0.10 -1.46 5.49 -26.70 -0.15 -1.61 16 17 C -0.12 -1.40 5.98 -26.70 -0.16 -1.56 16 18 C -0.07 -0.83 5.67 -28.05 -0.16 -0.99 16 19 C -0.09 -1.25 5.74 -104.60 -0.60 -1.85 16 20 C -0.10 -1.33 9.60 -39.46 -0.38 -1.71 16 21 C -0.16 -2.32 10.03 -39.62 -0.40 -2.72 16 22 C 0.09 1.62 7.30 -39.52 -0.29 1.33 16 23 F -0.14 -2.67 17.27 2.25 0.04 -2.63 16 24 C -0.15 -2.78 8.70 -39.37 -0.34 -3.13 16 25 C -0.07 -1.11 5.30 -104.62 -0.55 -1.66 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.03 0.70 7.95 -51.93 -0.41 0.29 16 29 H 0.09 2.35 5.94 -51.93 -0.31 2.04 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.34 6.94 6.94 -39.29 -0.27 6.67 16 33 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.07 1.02 6.78 -51.93 -0.35 0.67 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.76 8.10 -51.93 -0.42 0.33 16 37 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 1.22 8.05 -52.48 -0.42 0.80 16 40 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.16 3.53 5.11 -52.48 -0.27 3.26 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -27.14 318.78 -9.43 -36.56 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.90 Total: 7.80 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -3.39 Total: -24.49 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.04 Total: -38.20 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.14 -9.43 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.111 kcal (2) G-P(sol) polarization free energy of solvation -27.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds