Wall clock time and date at job start Mon Mar 30 2020 02:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 H 1.08999 * 109.47447 * 305.69240 * 3 2 1 5 5 C 1.50702 * 109.46990 * 185.69578 * 3 2 1 6 6 H 1.08004 * 120.00068 * 239.99821 * 5 3 2 7 7 C 1.37877 * 119.99970 * 60.00006 * 5 3 2 8 8 N 1.31513 * 119.99964 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99776 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47404 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47029 * 119.99986 * 9 7 5 12 12 H 1.48492 * 109.47140 * 239.99971 * 9 7 5 13 13 N 1.46909 * 109.47207 * 65.69624 * 3 2 1 14 14 C 1.46896 * 110.99636 * 260.90990 * 13 3 2 15 15 H 1.08989 * 109.25724 * 20.89969 * 14 13 3 16 16 C 1.52730 * 109.25510 * 140.33585 * 14 13 3 17 17 C 1.53331 * 108.37418 * 171.38872 * 16 14 13 18 18 C 1.52730 * 108.38581 * 290.08813 * 17 16 14 19 19 C 1.50648 * 110.60165 * 51.03436 * 18 17 16 20 20 C 1.38922 * 117.72360 * 162.49689 * 19 18 17 21 21 C 1.37887 * 120.58566 * 179.81792 * 20 19 18 22 22 C 1.38490 * 119.74713 * 359.93299 * 21 20 19 23 23 F 1.35093 * 120.14787 * 180.14354 * 22 21 20 24 24 C 1.38160 * 119.70868 * 0.12336 * 22 21 20 25 25 C 1.37678 * 122.55671 * 342.45310 * 19 18 17 26 26 H 1.08992 * 109.46914 * 175.41108 * 1 2 3 27 27 H 1.09000 * 109.46692 * 295.40804 * 1 2 3 28 28 H 1.08994 * 109.46656 * 55.40222 * 1 2 3 29 29 H 1.09003 * 109.46840 * 240.00031 * 2 1 3 30 30 H 1.08997 * 109.46779 * 120.00225 * 2 1 3 31 31 H 0.97001 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99505 * 136.95621 * 13 3 2 33 33 H 1.09001 * 109.68297 * 51.66567 * 16 14 13 34 34 H 1.08998 * 109.68295 * 291.10460 * 16 14 13 35 35 H 1.08995 * 109.68311 * 170.36189 * 17 16 14 36 36 H 1.09001 * 109.67956 * 49.80797 * 17 16 14 37 37 H 1.08999 * 109.24929 * 171.32223 * 18 17 16 38 38 H 1.08993 * 109.25390 * 290.74237 * 18 17 16 39 39 H 1.08003 * 119.70919 * 359.75958 * 20 19 18 40 40 H 1.07998 * 120.13291 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.73463 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1410 6 1 4.1547 1.8862 0.6299 7 6 4.1291 0.8833 -1.2542 8 7 3.3812 0.3462 -2.1933 9 14 5.9889 0.8869 -1.4293 10 1 6.5963 1.5470 -0.2459 11 1 6.4800 -0.5116 -1.5218 12 1 6.3689 1.6272 -2.6591 13 7 1.6659 2.0942 1.2623 14 6 0.4643 2.9218 1.0914 15 1 -0.0798 2.5874 0.2082 16 6 -0.4302 2.7709 2.3201 17 6 -1.5635 3.7990 2.2221 18 6 -0.9699 5.1913 2.4267 19 6 0.2124 5.4023 1.5173 20 6 0.6357 6.7075 1.3000 21 6 1.7142 6.9682 0.4813 22 6 2.3828 5.9201 -0.1290 23 9 3.4422 6.1660 -0.9304 24 6 1.9618 4.6218 0.0856 25 6 0.8736 4.3599 0.9078 26 1 -0.3633 -1.0243 -0.0822 27 1 -0.3633 0.4409 0.9283 28 1 -0.3632 0.5835 -0.8459 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7954 -0.0491 -2.9763 32 1 2.4317 2.6397 1.6284 33 1 0.1529 2.9521 3.2231 34 1 -0.8486 1.7648 2.3483 35 1 -2.3073 3.6000 2.9936 36 1 -2.0291 3.7394 1.2384 37 1 -1.7298 5.9415 2.2081 38 1 -0.6495 5.2966 3.4631 39 1 0.1149 7.5254 1.7757 40 1 2.0368 7.9857 0.3171 41 1 2.4832 3.8041 -0.3898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:08 Heat of formation + Delta-G solvation = -55.134587 kcal Electronic energy + Delta-G solvation = -22356.484527 eV Core-core repulsion = 19148.848160 eV Total energy + Delta-G solvation = -3207.636367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89029 -41.18418 -38.12594 -36.46948 -34.58056 -33.17445 -31.23920 -30.92782 -29.60528 -27.45517 -24.76290 -24.25533 -23.57745 -22.60545 -21.41517 -20.47664 -18.94223 -18.02548 -17.43870 -16.96690 -16.62948 -16.52907 -16.00139 -15.77459 -15.20177 -14.85711 -14.55929 -14.47133 -14.23534 -14.10478 -13.68055 -13.58902 -13.42991 -13.16722 -13.05272 -12.75148 -12.70174 -12.36282 -12.28047 -12.11795 -11.77899 -11.69927 -11.47913 -11.24486 -11.08237 -10.80777 -10.55388 -9.96627 -9.41631 -8.96055 -8.15357 -6.29501 0.19502 0.26794 1.33821 1.36441 1.46660 2.36473 2.59489 3.11119 3.30008 3.61816 3.73561 3.80051 4.04313 4.17023 4.22217 4.30516 4.40604 4.53288 4.58510 4.63605 4.73496 4.81139 4.84391 4.97472 5.05751 5.07630 5.11485 5.13872 5.18509 5.25899 5.30546 5.40421 5.50119 5.53098 5.54322 5.64018 5.70618 5.73769 5.92918 6.01758 6.27795 6.45161 6.77856 6.99991 7.40551 8.87890 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.007369 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.261998 B = 3799.041520 C = 5298.507332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.229 3.771 4 H -0.025 1.025 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.284 1.284 13 N -0.673 5.673 14 C 0.125 3.875 15 H 0.061 0.939 16 C -0.098 4.098 17 C -0.117 4.117 18 C -0.073 4.073 19 C -0.081 4.081 20 C -0.089 4.089 21 C -0.151 4.151 22 C 0.062 3.938 23 F -0.159 7.159 24 C -0.176 4.176 25 C -0.083 4.083 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 11.629 9.478 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C 0.121 3.879 4 H -0.007 1.007 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.210 1.210 13 N -0.302 5.302 14 C 0.015 3.985 15 H 0.079 0.921 16 C -0.136 4.136 17 C -0.155 4.155 18 C -0.110 4.110 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.169 4.169 22 C 0.043 3.957 23 F -0.137 7.137 24 C -0.195 4.195 25 C -0.084 4.084 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.903 10.967 9.505 18.152 hybrid contribution 2.300 0.273 -1.676 2.859 sum -8.603 11.240 7.829 16.176 Atomic orbital electron populations 1.21720 0.96636 1.00052 1.00514 1.21401 0.94241 0.98678 0.99897 1.18937 0.92742 0.91396 0.84815 1.00721 1.21743 0.93087 1.38000 1.04892 0.93065 1.25606 1.01970 0.94891 0.95585 1.70013 1.36154 1.39095 1.09660 0.85654 0.81197 0.77875 0.77847 1.19465 1.20168 1.21035 1.60911 1.06752 1.33131 1.29422 1.20681 0.92817 0.86017 0.98986 0.92104 1.21526 0.95903 0.99863 0.96296 1.21592 0.97359 0.93748 1.02767 1.20559 0.93749 0.98353 0.98314 1.20132 0.98028 0.91998 0.98002 1.21423 0.95372 0.97053 0.96817 1.21339 0.97668 0.98600 0.99341 1.17986 0.87691 0.94789 0.95257 1.91433 1.55140 1.95119 1.72055 1.21584 0.99978 0.96165 1.01751 1.20435 0.94315 0.97750 0.95950 0.93489 0.91768 0.95277 0.92391 0.95129 0.92925 0.85335 0.91449 0.91306 0.88609 0.92346 0.88059 0.88816 0.80990 0.82522 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.72 71.99 0.63 -4.65 16 2 C -0.10 -5.07 5.45 30.60 0.17 -4.90 16 3 C 0.23 11.56 1.03 44.17 0.05 11.61 16 4 H -0.02 -1.41 6.73 -2.39 -0.02 -1.42 16 5 C -0.54 -29.96 7.80 25.60 0.20 -29.76 16 6 H 0.05 2.86 7.43 -2.91 -0.02 2.83 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -53.21 11.29 21.45 0.24 -52.97 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 N -0.67 -28.28 5.70 -477.72 -2.72 -31.00 16 14 C 0.13 4.37 1.52 44.06 0.07 4.44 16 15 H 0.06 2.38 6.23 -2.39 -0.01 2.37 16 16 C -0.10 -2.58 5.49 30.62 0.17 -2.41 16 17 C -0.12 -2.22 5.98 30.62 0.18 -2.04 16 18 C -0.07 -1.24 5.67 29.74 0.17 -1.07 16 19 C -0.08 -2.02 5.74 -19.85 -0.11 -2.13 16 20 C -0.09 -1.91 9.60 22.35 0.21 -1.70 16 21 C -0.15 -3.95 10.03 22.25 0.22 -3.73 16 22 C 0.06 2.22 7.30 22.31 0.16 2.39 16 23 F -0.16 -6.27 17.27 44.97 0.78 -5.49 16 24 C -0.18 -7.04 8.70 22.40 0.19 -6.84 16 25 C -0.08 -2.79 5.30 -19.86 -0.11 -2.90 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.32 5.64 -2.39 -0.01 2.30 16 28 H 0.03 1.17 7.95 -2.39 -0.02 1.15 16 29 H 0.06 3.21 5.94 -2.39 -0.01 3.20 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.33 14.39 6.94 -89.69 -0.62 13.77 16 33 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.07 1.84 6.78 -2.39 -0.02 1.82 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.10 1.20 8.12 -2.39 -0.02 1.18 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.17 2.14 8.05 -2.91 -0.02 2.12 16 40 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.11 5.57 5.11 -2.91 -0.01 5.56 16 Total: -1.00 -64.09 318.78 3.39 -60.70 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.41 Total: 23.79 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.65 Total: -42.17 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.48 Total: -83.97 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.78 Total: -5.49 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.09 3.39 -60.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.564 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds