Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46903 * 2 1 4 4 H 1.09011 * 109.47233 * 304.68379 * 3 2 1 5 5 C 1.50701 * 109.47087 * 184.68616 * 3 2 1 6 6 H 1.08002 * 119.99891 * 239.99795 * 5 3 2 7 7 C 1.37870 * 120.00227 * 60.00042 * 5 3 2 8 8 N 1.31517 * 119.99970 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00259 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47052 * 59.99706 * 9 7 5 11 11 H 1.48508 * 109.47167 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46992 * 299.99505 * 9 7 5 13 13 N 1.46896 * 109.47342 * 64.68271 * 3 2 1 14 14 C 1.46900 * 111.00123 * 207.75270 * 13 3 2 15 15 H 1.08998 * 109.25226 * 33.33611 * 14 13 3 16 16 C 1.52729 * 109.25448 * 273.89769 * 14 13 3 17 17 C 1.53312 * 108.34838 * 188.58409 * 16 14 13 18 18 C 1.52734 * 108.39574 * 69.92866 * 17 16 14 19 19 C 1.50643 * 110.56177 * 308.84153 * 18 17 16 20 20 C 1.38923 * 117.72711 * 197.75253 * 19 18 17 21 21 C 1.37888 * 120.58605 * 180.21478 * 20 19 18 22 22 C 1.38489 * 119.74385 * 0.05456 * 21 20 19 23 23 F 1.35101 * 120.14528 * 179.85957 * 22 21 20 24 24 C 1.38153 * 119.71492 * 359.88610 * 22 21 20 25 25 C 1.37681 * 122.55353 * 17.79421 * 19 18 17 26 26 H 1.09004 * 109.46762 * 294.66453 * 1 2 3 27 27 H 1.08996 * 109.47498 * 54.67165 * 1 2 3 28 28 H 1.08999 * 109.46683 * 174.67172 * 1 2 3 29 29 H 1.08997 * 109.47043 * 239.99920 * 2 1 3 30 30 H 1.08998 * 109.47167 * 120.00052 * 2 1 3 31 31 H 0.97000 * 120.00511 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00093 * 83.80000 * 13 3 2 33 33 H 1.08995 * 109.68465 * 308.32675 * 16 14 13 34 34 H 1.09006 * 109.68086 * 68.88150 * 16 14 13 35 35 H 1.09002 * 109.70480 * 310.18572 * 17 16 14 36 36 H 1.09000 * 109.65043 * 189.64138 * 17 16 14 37 37 H 1.08993 * 109.25036 * 188.57079 * 18 17 16 38 38 H 1.09000 * 109.25116 * 69.10796 * 18 17 16 39 39 H 1.08003 * 119.70986 * 0.23168 * 20 19 18 40 40 H 1.07998 * 120.13271 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.74055 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9800 -0.8451 5 6 3.5425 1.4441 -0.1161 6 1 4.1438 1.8902 0.6624 7 6 4.1496 0.8763 -1.2160 8 7 3.4175 0.3327 -2.1637 9 14 6.0121 0.8776 -1.3595 10 1 6.5978 0.1450 -0.2083 11 1 6.4115 0.2109 -2.6250 12 1 6.5075 2.2776 -1.3593 13 7 1.6448 2.1016 1.2519 14 6 1.5034 3.5513 1.0618 15 1 1.1401 3.7478 0.0531 16 6 2.8651 4.2185 1.2448 17 6 2.6603 5.7378 1.2572 18 6 1.9415 6.1167 2.5505 19 6 0.7094 5.2707 2.7384 20 6 -0.2514 5.7185 3.6362 21 6 -1.4000 4.9882 3.8570 22 6 -1.5977 3.7969 3.1790 23 9 -2.7187 3.0734 3.3912 24 6 -0.6433 3.3513 2.2850 25 6 0.5117 4.0889 2.0602 26 1 -0.3633 0.4289 0.9340 27 1 -0.3634 0.5942 -0.8384 28 1 -0.3633 -1.0232 -0.0954 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8445 -0.0665 -2.9378 32 1 2.3001 1.8961 1.9912 33 1 3.3064 3.8992 2.1888 34 1 3.5225 3.9433 0.4200 35 1 2.0551 6.0341 0.4004 36 1 3.6277 6.2384 1.2146 37 1 1.6532 7.1669 2.5069 38 1 2.6148 5.9636 3.3939 39 1 -0.0976 6.6471 4.1658 40 1 -2.1423 5.3434 4.5564 41 1 -0.7969 2.4221 1.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -43.507142 kcal Electronic energy + Delta-G solvation = -22057.902027 eV Core-core repulsion = 18850.769863 eV Total energy + Delta-G solvation = -3207.132163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.60841 -39.82562 -36.66390 -34.95544 -32.88007 -31.48595 -30.21455 -29.61053 -27.49176 -25.89716 -23.20584 -22.80013 -22.34769 -21.35370 -19.70592 -19.21100 -16.99952 -16.48080 -16.25361 -15.55977 -15.29175 -14.89289 -14.49833 -14.27812 -13.83185 -13.44648 -13.28777 -13.10467 -12.76526 -12.61629 -12.42645 -12.24069 -11.76346 -11.36615 -11.25533 -11.17956 -11.01051 -10.96108 -10.76567 -10.66834 -10.50624 -10.20571 -10.03110 -9.59736 -9.41475 -9.06873 -8.59530 -8.40439 -8.20769 -7.32928 -6.02948 -4.15227 1.39405 1.49622 3.25075 3.31204 3.33167 3.80333 4.36218 4.50626 4.80417 4.88910 5.11015 5.19966 5.22898 5.26066 5.32224 5.46680 5.65950 5.79125 5.83289 5.91656 6.03367 6.17220 6.21264 6.23675 6.35608 6.39267 6.41493 6.50146 6.53439 6.67175 6.70265 6.87933 6.91151 7.11172 7.14031 7.22294 7.41454 7.55775 7.74956 8.05632 8.09683 8.28785 8.60247 8.96397 9.52107 10.97524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.005783 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.643250 B = 4840.943626 C = 6076.162453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.133 3.867 15 H 0.084 0.916 16 C -0.143 4.143 17 C -0.119 4.119 18 C -0.076 4.076 19 C -0.089 4.089 20 C -0.104 4.104 21 C -0.162 4.162 22 C 0.080 3.920 23 F -0.147 7.147 24 C -0.120 4.120 25 C -0.030 4.030 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.332 0.668 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 9.959 8.603 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.022 3.978 15 H 0.102 0.898 16 C -0.182 4.182 17 C -0.157 4.157 18 C -0.113 4.113 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.181 4.181 22 C 0.061 3.939 23 F -0.125 7.125 24 C -0.139 4.139 25 C -0.031 4.031 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.962 9.668 8.318 14.078 hybrid contribution 1.742 0.066 -0.091 1.746 sum -4.220 9.734 8.227 13.426 Atomic orbital electron populations 1.21715 0.99096 0.98414 1.00203 1.21510 0.91981 0.99299 1.01724 1.19222 0.92978 0.91154 0.85731 0.95010 1.21844 0.92546 1.38181 1.05672 0.92537 1.24923 0.97748 0.94988 0.95786 1.69863 1.34924 1.37988 1.09472 0.86755 0.86257 0.78172 0.77369 1.20341 1.21312 1.20400 1.60914 1.54010 1.05422 1.10692 1.20260 0.91703 0.89743 0.96093 0.89785 1.22349 0.98730 0.93975 1.03133 1.21562 0.99882 0.97356 0.96938 1.20448 0.94126 0.97873 0.98870 1.19730 0.96528 0.95655 0.97071 1.20878 0.93237 0.99684 0.98374 1.20933 0.99683 0.95146 1.02361 1.17713 0.84498 0.91838 0.99887 1.91463 1.49852 1.77231 1.94000 1.21330 0.92839 1.01531 0.98205 1.19790 0.94730 0.92520 0.96029 0.93622 0.94427 0.95616 0.89138 0.95061 0.92824 0.85046 0.92245 0.89254 0.91824 0.91923 0.91319 0.90933 0.85836 0.85577 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.73 37.16 0.36 -2.39 16 2 C -0.11 -2.46 5.45 -26.73 -0.15 -2.60 16 3 C 0.22 5.00 1.99 -68.87 -0.14 4.86 16 4 H 0.03 0.82 7.35 -51.92 -0.38 0.44 16 5 C -0.54 -13.60 7.16 -34.44 -0.25 -13.85 16 6 H 0.06 1.39 6.90 -52.49 -0.36 1.03 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.50 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.26 4.68 -102.35 -0.48 -13.74 16 14 C 0.13 2.31 2.47 -69.03 -0.17 2.14 16 15 H 0.08 1.60 7.35 -51.93 -0.38 1.21 16 16 C -0.14 -2.32 4.58 -26.71 -0.12 -2.44 16 17 C -0.12 -1.57 5.97 -26.71 -0.16 -1.73 16 18 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 19 C -0.09 -1.22 5.74 -104.60 -0.60 -1.82 16 20 C -0.10 -1.27 9.60 -39.46 -0.38 -1.65 16 21 C -0.16 -2.10 10.03 -39.62 -0.40 -2.50 16 22 C 0.08 1.21 7.30 -39.52 -0.29 0.92 16 23 F -0.15 -2.30 17.27 2.25 0.04 -2.26 16 24 C -0.12 -1.95 9.19 -39.38 -0.36 -2.32 16 25 C -0.03 -0.47 5.55 -104.62 -0.58 -1.05 16 26 H 0.04 0.87 7.14 -51.93 -0.37 0.50 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 2.35 5.96 -51.93 -0.31 2.04 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.33 6.55 7.95 -39.29 -0.31 6.24 16 33 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 34 H 0.09 1.68 6.65 -51.93 -0.35 1.34 16 35 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.17 8.05 -52.48 -0.42 0.75 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.15 2.54 6.85 -52.49 -0.36 2.18 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -25.80 325.27 -9.59 -35.38 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.17 Total: 7.65 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -3.48 Total: -23.81 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.15 Total: -37.24 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.80 -9.59 -35.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.125 kcal (2) G-P(sol) polarization free energy of solvation -25.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds