Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46903 * 2 1 4 4 H 1.09011 * 109.47233 * 304.68379 * 3 2 1 5 5 C 1.50701 * 109.47087 * 184.68616 * 3 2 1 6 6 H 1.08002 * 119.99891 * 239.99795 * 5 3 2 7 7 C 1.37870 * 120.00227 * 60.00042 * 5 3 2 8 8 N 1.31517 * 119.99970 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00259 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47052 * 59.99706 * 9 7 5 11 11 H 1.48508 * 109.47167 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46992 * 299.99505 * 9 7 5 13 13 N 1.46896 * 109.47342 * 64.68271 * 3 2 1 14 14 C 1.46900 * 111.00123 * 207.75270 * 13 3 2 15 15 H 1.08998 * 109.25226 * 33.33611 * 14 13 3 16 16 C 1.52729 * 109.25448 * 273.89769 * 14 13 3 17 17 C 1.53312 * 108.34838 * 188.58409 * 16 14 13 18 18 C 1.52734 * 108.39574 * 69.92866 * 17 16 14 19 19 C 1.50643 * 110.56177 * 308.84153 * 18 17 16 20 20 C 1.38923 * 117.72711 * 197.75253 * 19 18 17 21 21 C 1.37888 * 120.58605 * 180.21478 * 20 19 18 22 22 C 1.38489 * 119.74385 * 0.05456 * 21 20 19 23 23 F 1.35101 * 120.14528 * 179.85957 * 22 21 20 24 24 C 1.38153 * 119.71492 * 359.88610 * 22 21 20 25 25 C 1.37681 * 122.55353 * 17.79421 * 19 18 17 26 26 H 1.09004 * 109.46762 * 294.66453 * 1 2 3 27 27 H 1.08996 * 109.47498 * 54.67165 * 1 2 3 28 28 H 1.08999 * 109.46683 * 174.67172 * 1 2 3 29 29 H 1.08997 * 109.47043 * 239.99920 * 2 1 3 30 30 H 1.08998 * 109.47167 * 120.00052 * 2 1 3 31 31 H 0.97000 * 120.00511 * 179.97438 * 8 7 5 32 32 H 1.00905 * 111.00093 * 83.80000 * 13 3 2 33 33 H 1.08995 * 109.68465 * 308.32675 * 16 14 13 34 34 H 1.09006 * 109.68086 * 68.88150 * 16 14 13 35 35 H 1.09002 * 109.70480 * 310.18572 * 17 16 14 36 36 H 1.09000 * 109.65043 * 189.64138 * 17 16 14 37 37 H 1.08993 * 109.25036 * 188.57079 * 18 17 16 38 38 H 1.09000 * 109.25116 * 69.10796 * 18 17 16 39 39 H 1.08003 * 119.70986 * 0.23168 * 20 19 18 40 40 H 1.07998 * 120.13271 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.74055 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9800 -0.8451 5 6 3.5425 1.4441 -0.1161 6 1 4.1438 1.8902 0.6624 7 6 4.1496 0.8763 -1.2160 8 7 3.4175 0.3327 -2.1637 9 14 6.0121 0.8776 -1.3595 10 1 6.5978 0.1450 -0.2083 11 1 6.4115 0.2109 -2.6250 12 1 6.5075 2.2776 -1.3593 13 7 1.6448 2.1016 1.2519 14 6 1.5034 3.5513 1.0618 15 1 1.1401 3.7478 0.0531 16 6 2.8651 4.2185 1.2448 17 6 2.6603 5.7378 1.2572 18 6 1.9415 6.1167 2.5505 19 6 0.7094 5.2707 2.7384 20 6 -0.2514 5.7185 3.6362 21 6 -1.4000 4.9882 3.8570 22 6 -1.5977 3.7969 3.1790 23 9 -2.7187 3.0734 3.3912 24 6 -0.6433 3.3513 2.2850 25 6 0.5117 4.0889 2.0602 26 1 -0.3633 0.4289 0.9340 27 1 -0.3634 0.5942 -0.8384 28 1 -0.3633 -1.0232 -0.0954 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8445 -0.0665 -2.9378 32 1 2.3001 1.8961 1.9912 33 1 3.3064 3.8992 2.1888 34 1 3.5225 3.9433 0.4200 35 1 2.0551 6.0341 0.4004 36 1 3.6277 6.2384 1.2146 37 1 1.6532 7.1669 2.5069 38 1 2.6148 5.9636 3.3939 39 1 -0.0976 6.6471 4.1658 40 1 -2.1423 5.3434 4.5564 41 1 -0.7969 2.4221 1.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -55.433756 kcal Electronic energy + Delta-G solvation = -22058.419203 eV Core-core repulsion = 18850.769863 eV Total energy + Delta-G solvation = -3207.649340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.78689 -41.00699 -38.18174 -36.32575 -34.45174 -33.24571 -31.57845 -30.77101 -28.95391 -27.59936 -24.71943 -24.24231 -23.51556 -22.61998 -21.49854 -20.47998 -18.56566 -18.03973 -17.42173 -16.92733 -16.54834 -16.44585 -15.86874 -15.65145 -15.35010 -14.75434 -14.57840 -14.47832 -14.25202 -13.93349 -13.60612 -13.54047 -13.32912 -13.15287 -13.01648 -12.77714 -12.57027 -12.27477 -12.18892 -12.18029 -11.81054 -11.68034 -11.59010 -11.40564 -11.07361 -10.86760 -10.42374 -9.74564 -9.30499 -9.00636 -8.02063 -6.22060 0.28330 0.39901 1.40480 1.42022 1.48309 2.42309 2.69394 3.18743 3.38225 3.59756 3.77766 3.95443 4.07315 4.16638 4.20115 4.32288 4.48091 4.53205 4.62172 4.67847 4.74351 4.77249 4.91661 4.99150 5.06235 5.08844 5.13807 5.18115 5.21266 5.32252 5.39016 5.43513 5.46247 5.52468 5.60426 5.64459 5.73454 5.83099 6.08987 6.12316 6.21916 6.42549 6.83048 7.04462 7.48518 8.95077 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.005783 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.643250 B = 4840.943626 C = 6076.162453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.675 5.675 14 C 0.136 3.864 15 H 0.056 0.944 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.072 4.072 19 C -0.088 4.088 20 C -0.092 4.092 21 C -0.152 4.152 22 C 0.063 3.937 23 F -0.154 7.154 24 C -0.138 4.138 25 C -0.048 4.048 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 12.413 10.907 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.303 5.303 14 C 0.026 3.974 15 H 0.075 0.925 16 C -0.176 4.176 17 C -0.153 4.153 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.171 4.171 22 C 0.044 3.956 23 F -0.133 7.133 24 C -0.157 4.157 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.741 12.136 10.637 17.128 hybrid contribution 1.626 -0.657 -0.783 1.920 sum -4.115 11.479 9.854 15.678 Atomic orbital electron populations 1.21567 0.96861 0.99412 1.00319 1.21376 0.93973 0.98811 0.99991 1.18936 0.91948 0.91100 0.86140 0.98472 1.22137 0.93605 1.37295 1.05472 0.92333 1.25633 1.01659 0.95003 0.95716 1.70006 1.36368 1.39022 1.09936 0.85808 0.81594 0.78256 0.77125 1.19937 1.21471 1.19762 1.60824 1.53438 1.07147 1.08848 1.20166 0.93124 0.88471 0.95615 0.92547 1.22196 0.96995 0.96683 1.01724 1.21533 1.01114 0.94599 0.98071 1.20504 0.93179 0.99072 0.98076 1.20022 0.97751 0.94647 0.96461 1.21291 0.91851 1.00593 0.97233 1.21301 1.00472 0.93684 1.01619 1.17897 0.84211 0.92974 1.00540 1.91440 1.50136 1.77652 1.94080 1.21194 0.93977 1.01286 0.99270 1.19585 0.94228 0.94060 0.96973 0.92750 0.95193 0.93919 0.92049 0.95396 0.93109 0.85122 0.91973 0.92569 0.92356 0.90181 0.88168 0.89402 0.81726 0.82687 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 9.73 71.98 0.70 -4.44 16 2 C -0.10 -4.94 5.45 30.59 0.17 -4.77 16 3 C 0.23 11.02 1.99 44.17 0.09 11.11 16 4 H 0.00 -0.15 7.35 -2.38 -0.02 -0.16 16 5 C -0.55 -28.21 7.16 25.60 0.18 -28.03 16 6 H 0.06 2.94 6.90 -2.91 -0.02 2.92 16 7 C 0.02 1.05 5.29 84.65 0.45 1.49 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.47 16 9 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.67 -27.32 4.68 -477.72 -2.24 -29.56 16 14 C 0.14 4.91 2.47 44.06 0.11 5.02 16 15 H 0.06 2.31 7.35 -2.39 -0.02 2.29 16 16 C -0.14 -4.46 4.58 30.61 0.14 -4.32 16 17 C -0.12 -2.81 5.97 30.61 0.18 -2.62 16 18 C -0.07 -1.40 5.67 29.74 0.17 -1.23 16 19 C -0.09 -2.15 5.74 -19.85 -0.11 -2.26 16 20 C -0.09 -1.82 9.60 22.35 0.21 -1.61 16 21 C -0.15 -3.40 10.03 22.25 0.22 -3.18 16 22 C 0.06 1.83 7.30 22.31 0.16 2.00 16 23 F -0.15 -4.74 17.27 44.97 0.78 -3.97 16 24 C -0.14 -4.54 9.19 22.40 0.21 -4.33 16 25 C -0.05 -1.48 5.55 -19.86 -0.11 -1.59 16 26 H 0.05 2.14 7.14 -2.39 -0.02 2.12 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 3.33 5.96 -2.39 -0.01 3.32 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.33 13.43 7.95 -89.69 -0.71 12.72 16 33 H 0.06 1.96 7.91 -2.39 -0.02 1.94 16 34 H 0.06 2.18 6.65 -2.38 -0.02 2.17 16 35 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.42 8.12 -2.39 -0.02 1.40 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.17 1.99 8.05 -2.91 -0.02 1.97 16 40 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.12 4.48 6.85 -2.91 -0.02 4.46 16 Total: -1.00 -58.13 325.27 3.89 -54.24 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.31 Total: 25.00 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 2.77 Total: -38.77 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.00 Total: -81.02 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.97 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -58.13 3.89 -54.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.197 kcal (2) G-P(sol) polarization free energy of solvation -58.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds