Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47380 * 2 1 4 4 H 1.08992 * 109.47417 * 175.22635 * 3 2 1 5 5 C 1.50701 * 109.46909 * 55.22121 * 3 2 1 6 6 H 1.08003 * 120.00463 * 245.72360 * 5 3 2 7 7 C 1.37883 * 119.99555 * 65.72774 * 5 3 2 8 8 N 1.31510 * 120.00124 * 5.51508 * 7 5 3 9 9 Si 1.86803 * 119.99690 * 185.51233 * 7 5 3 10 10 H 1.48505 * 109.47172 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47451 * 300.00235 * 9 7 5 12 12 H 1.48499 * 109.47176 * 60.00105 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.22619 * 3 2 1 14 14 C 1.46896 * 110.99922 * 279.79729 * 13 3 2 15 15 C 1.50703 * 109.47407 * 184.95352 * 14 13 3 16 16 O 1.21285 * 119.99613 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00173 * 180.02562 * 15 14 13 18 18 C 1.46504 * 119.99581 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46502 * 179.97438 * 18 17 15 20 20 C 1.38675 * 120.41441 * 269.71769 * 19 18 17 21 21 C 1.38626 * 118.41605 * 179.78866 * 20 19 18 22 22 C 1.38228 * 119.16516 * 0.51199 * 21 20 19 23 23 N 1.31862 * 120.75816 * 359.72842 * 22 21 20 24 24 C 1.31883 * 121.72520 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.46850 * 304.94498 * 1 2 3 26 26 H 1.08995 * 109.47354 * 64.94589 * 1 2 3 27 27 H 1.09007 * 109.46933 * 184.94980 * 1 2 3 28 28 H 1.08999 * 109.46631 * 239.99865 * 2 1 3 29 29 H 1.09002 * 109.47257 * 120.00344 * 2 1 3 30 30 H 0.96997 * 119.99995 * 355.15403 * 8 7 5 31 31 H 1.00897 * 111.00065 * 155.83926 * 13 3 2 32 32 H 1.09009 * 109.46898 * 304.94878 * 14 13 3 33 33 H 1.08996 * 109.47797 * 64.95086 * 14 13 3 34 34 H 0.96996 * 120.00048 * 359.97438 * 17 15 14 35 35 H 1.08994 * 109.47068 * 299.99039 * 18 17 15 36 36 H 1.08998 * 109.47270 * 60.00130 * 18 17 15 37 37 H 1.08003 * 120.79415 * 0.02562 * 20 19 18 38 38 H 1.08005 * 120.41633 * 180.21894 * 21 20 19 39 39 H 1.07995 * 119.61993 * 179.75226 * 22 21 20 40 40 H 1.08000 * 119.61143 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1266 1.4436 0.0855 5 6 1.4434 2.1861 1.1670 6 1 0.7592 3.0036 0.9937 7 6 1.7712 1.8230 2.4562 8 7 2.6854 0.9016 2.6675 9 14 0.9167 2.6401 3.9025 10 1 1.4439 2.0769 5.1714 11 1 1.1711 4.1026 3.8660 12 1 -0.5447 2.3897 3.8198 13 7 1.6468 2.1009 -1.2529 14 6 2.5539 1.7329 -2.3482 15 6 2.1947 2.5183 -3.5833 16 8 1.2735 3.3065 -3.5540 17 7 2.8966 2.3439 -4.7205 18 6 2.5470 3.1070 -5.9213 19 6 3.4777 2.7295 -7.0449 20 6 4.6614 3.4251 -7.2397 21 6 5.4888 3.0400 -8.2832 22 6 5.1041 1.9900 -9.0956 23 7 3.9684 1.3543 -8.8836 24 6 3.1597 1.6895 -7.8972 25 1 -0.3633 0.5886 0.8424 26 1 -0.3634 0.4352 -0.9309 27 1 -0.3633 -1.0239 0.0887 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.0785 0.4276 1.9181 31 1 1.6065 3.1025 -1.1378 32 1 3.5810 1.9579 -2.0605 33 1 2.4599 0.6670 -2.5554 34 1 3.6331 1.7132 -4.7440 35 1 1.5200 2.8818 -6.2086 36 1 2.6412 4.1730 -5.7145 37 1 4.9341 4.2449 -6.5915 38 1 6.4201 3.5571 -8.4620 39 1 5.7412 1.6864 -9.9131 40 1 2.2379 1.1452 -7.7545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = -31.328619 kcal Electronic energy + Delta-G solvation = -20635.260519 eV Core-core repulsion = 17448.576418 eV Total energy + Delta-G solvation = -3186.684101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35785 -40.57416 -38.21792 -36.30344 -34.61554 -33.47091 -32.70807 -32.36437 -29.24233 -27.50155 -25.89239 -25.21058 -24.56259 -22.97214 -21.74911 -21.08004 -19.30925 -18.22286 -17.78443 -17.49958 -17.24433 -16.81546 -15.95208 -15.90166 -15.61992 -15.47606 -15.18696 -14.77357 -14.55644 -14.21669 -14.09658 -13.97718 -13.67464 -13.54086 -13.32253 -13.06203 -12.60196 -12.55558 -12.00934 -11.95198 -11.85622 -11.61031 -11.14878 -10.77751 -10.58769 -10.49627 -10.38721 -10.17831 -10.05416 -9.16200 -8.55014 -6.26902 -0.00324 0.27258 1.55483 1.57875 1.62223 1.81324 2.11070 2.58477 2.86139 3.23704 3.40627 3.55857 3.67409 3.84410 3.86642 3.98833 4.04597 4.30157 4.37416 4.45951 4.48562 4.55811 4.59026 4.70499 4.74535 4.82352 5.01232 5.13174 5.18989 5.24817 5.31358 5.37973 5.49287 5.70287 5.71479 5.88116 6.09287 6.37679 6.52867 6.59720 6.78944 6.96055 7.19250 7.50404 8.82843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036134 B = 0.002906 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.702484 B = 9632.215498 C = 9741.077979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C 0.209 3.791 4 H -0.031 1.031 5 C -0.598 4.598 6 H 0.044 0.956 7 C -0.021 4.021 8 N -0.936 5.936 9 Si 1.107 2.893 10 H -0.285 1.285 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.041 3.959 15 C 0.521 3.479 16 O -0.566 6.566 17 N -0.715 5.715 18 C 0.170 3.830 19 C -0.159 4.159 20 C -0.061 4.061 21 C -0.168 4.168 22 C 0.094 3.906 23 N -0.514 5.514 24 C 0.107 3.893 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.336 0.664 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.412 0.588 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 2.528 -22.089 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.141 4.141 3 C 0.100 3.900 4 H -0.014 1.014 5 C -0.636 4.636 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.574 5.574 9 Si 0.931 3.069 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.200 1.200 13 N -0.300 5.300 14 C -0.092 4.092 15 C 0.307 3.693 16 O -0.444 6.444 17 N -0.369 5.369 18 C 0.047 3.953 19 C -0.162 4.162 20 C -0.087 4.087 21 C -0.188 4.188 22 C -0.062 4.062 23 N -0.223 5.223 24 C -0.050 4.050 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.197 0.803 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.485 2.001 -21.154 21.945 hybrid contribution 1.424 0.718 -0.784 1.777 sum 6.908 2.719 -21.938 23.160 Atomic orbital electron populations 1.21347 0.95538 0.98931 1.01143 1.21440 0.97181 0.97154 0.98372 1.19151 0.91478 0.92543 0.86799 1.01351 1.22182 1.30039 1.18475 0.92893 0.93753 1.26927 0.95416 0.96884 1.02790 1.70906 1.25694 1.25398 1.35411 0.83035 0.75510 0.75455 0.72937 1.21035 1.20038 1.19996 1.60311 1.50801 1.13774 1.05120 1.21912 0.96016 1.01014 0.90222 1.20733 0.81465 0.82102 0.84954 1.90685 1.30807 1.37931 1.84958 1.45897 1.36134 1.44962 1.09863 1.20039 0.97352 0.96298 0.81626 1.20763 0.97515 0.99131 0.98771 1.21871 0.92098 0.98137 0.96603 1.22502 1.01964 0.98644 0.95650 1.23364 0.92531 0.91761 0.98575 1.67777 1.05472 1.29583 1.19462 1.22902 0.98653 0.93688 0.89796 0.94324 0.93220 0.93969 0.93708 0.94501 0.92692 0.84651 0.92211 0.87488 0.75139 0.90756 0.90661 0.83130 0.81667 0.80314 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.93 9.53 71.98 0.69 -4.25 16 2 C -0.10 -4.72 5.47 30.59 0.17 -4.55 16 3 C 0.21 10.27 1.92 44.17 0.08 10.35 16 4 H -0.03 -1.64 7.31 -2.39 -0.02 -1.65 16 5 C -0.60 -32.93 6.92 25.60 0.18 -32.75 16 6 H 0.04 2.50 7.75 -2.91 -0.02 2.48 16 7 C -0.02 -1.17 5.29 84.66 0.45 -0.73 16 8 N -0.94 -55.38 13.20 21.45 0.28 -55.10 16 9 Si 1.11 50.25 29.91 68.60 2.05 52.31 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.67 -28.77 5.54 -499.48 -2.77 -31.54 16 14 C 0.04 1.34 5.99 85.56 0.51 1.85 16 15 C 0.52 15.90 7.86 87.66 0.69 16.59 16 16 O -0.57 -22.09 16.09 -3.04 -0.05 -22.14 16 17 N -0.71 -15.00 5.55 -466.77 -2.59 -17.59 16 18 C 0.17 3.17 5.83 85.63 0.50 3.67 16 19 C -0.16 -2.43 5.27 -19.77 -0.10 -2.54 16 20 C -0.06 -0.75 9.86 22.47 0.22 -0.53 16 21 C -0.17 -1.70 10.11 22.36 0.23 -1.48 16 22 C 0.09 1.21 11.18 84.69 0.95 2.16 16 23 N -0.51 -9.35 10.36 -195.85 -2.03 -11.38 16 24 C 0.11 1.80 10.86 84.67 0.92 2.72 16 25 H 0.04 1.87 6.89 -2.39 -0.02 1.85 16 26 H 0.05 2.12 7.89 -2.39 -0.02 2.10 16 27 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.04 1.80 7.13 -2.39 -0.02 1.78 16 29 H 0.04 1.85 6.18 -2.39 -0.01 1.84 16 30 H 0.26 15.47 5.62 -92.71 -0.52 14.95 16 31 H 0.34 15.40 7.88 -89.70 -0.71 14.70 16 32 H 0.06 1.86 7.95 -2.38 -0.02 1.84 16 33 H 0.11 3.20 7.20 -2.39 -0.02 3.18 16 34 H 0.41 6.69 8.46 -92.71 -0.78 5.91 16 35 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 36 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.32 334.88 0.19 -70.13 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.19 Total: 24.80 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.47 Total: -9.48 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -7.10 Total: -115.61 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.05 Total: 52.31 kcal Total: -70.32 0.19 -70.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.800 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds