Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 H 1.09003 * 109.47098 * 305.68246 * 3 2 1 5 5 C 1.53002 * 109.47311 * 185.68027 * 3 2 1 6 6 C 1.52995 * 109.46932 * 65.00056 * 5 3 2 7 7 F 1.39899 * 109.47283 * 64.99890 * 6 5 3 8 8 F 1.39900 * 109.47228 * 185.00032 * 6 5 3 9 9 C 1.53008 * 109.47178 * 65.67896 * 3 2 1 10 10 N 1.46895 * 109.46972 * 182.98910 * 9 3 2 11 11 C 1.48533 * 111.00443 * 58.45198 * 10 9 3 12 12 C 1.54934 * 103.22678 * 159.71550 * 11 10 9 13 13 C 1.54595 * 102.92618 * 322.58989 * 12 11 10 14 14 O 1.42894 * 110.39403 * 262.99646 * 13 12 11 15 15 C 1.50704 * 110.31056 * 140.87200 * 13 12 11 16 16 H 1.08001 * 120.00011 * 244.28848 * 15 13 12 17 17 C 1.37870 * 120.00008 * 64.28469 * 15 13 12 18 18 N 1.31520 * 119.99986 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00115 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47319 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47298 * 210.00045 * 19 17 15 22 22 H 1.48496 * 109.47092 * 330.00036 * 19 17 15 23 23 C 1.47901 * 110.99730 * 175.85162 * 10 9 3 24 24 H 1.09005 * 109.47098 * 173.79411 * 1 2 3 25 25 H 1.09006 * 109.47352 * 293.79604 * 1 2 3 26 26 H 1.09004 * 109.47135 * 53.79390 * 1 2 3 27 27 H 1.09004 * 109.47418 * 239.99936 * 2 1 3 28 28 H 1.08998 * 109.47261 * 119.99753 * 2 1 3 29 29 H 1.09002 * 109.46949 * 184.99685 * 5 3 2 30 30 H 1.09000 * 109.47079 * 304.99889 * 5 3 2 31 31 H 1.08998 * 109.47073 * 304.99855 * 6 5 3 32 32 H 1.08995 * 109.46881 * 302.98925 * 9 3 2 33 33 H 1.08997 * 109.46806 * 62.98574 * 9 3 2 34 34 H 1.08998 * 110.66995 * 278.15723 * 11 10 9 35 35 H 1.09005 * 110.66120 * 41.28414 * 11 10 9 36 36 H 1.08995 * 110.72564 * 204.22500 * 12 11 10 37 37 H 1.09003 * 110.87093 * 81.02000 * 12 11 10 38 38 H 0.96707 * 114.00246 * 295.76518 * 14 13 12 39 39 H 0.97005 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.91810 * 333.50409 * 23 10 9 41 41 H 1.09006 * 109.92075 * 94.60650 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 3.5633 1.4449 -0.1428 6 6 3.9481 0.8795 -1.5114 7 9 3.4808 1.7329 -2.5166 8 9 5.3405 0.7753 -1.5982 9 6 1.6499 2.1214 1.3145 10 7 2.0767 3.5267 1.2853 11 6 1.4609 4.2465 0.1412 12 6 1.5722 5.7347 0.5574 13 6 1.3087 5.6886 2.0801 14 8 -0.0591 5.9947 2.3583 15 6 2.2163 6.6544 2.7974 16 1 2.9573 6.2855 3.4911 17 6 2.1007 8.0090 2.5681 18 7 1.1987 8.4583 1.7229 19 14 3.2261 9.2062 3.4567 20 1 4.4524 9.4259 2.6484 21 1 2.5212 10.4991 3.6482 22 1 3.5995 8.6453 4.7800 23 6 1.6288 4.2420 2.4999 24 1 -0.3633 -1.0217 -0.1111 25 1 -0.3634 0.4147 0.9403 26 1 -0.3633 0.6071 -0.8292 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9350 2.4657 -0.0538 30 1 4.0027 0.8285 0.6416 31 1 3.5015 -0.1070 -1.6356 32 1 0.5685 2.0727 1.4416 33 1 2.1367 1.6109 2.1455 34 1 2.0198 4.0606 -0.7760 35 1 0.4167 3.9573 0.0220 36 1 0.8144 6.3340 0.0528 37 1 2.5696 6.1224 0.3501 38 1 -0.3184 6.8938 2.1143 39 1 1.1177 9.4113 1.5613 40 1 0.7348 3.7659 2.9028 41 1 2.4216 4.2361 3.2480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595557202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -171.194654 kcal Electronic energy + Delta-G solvation = -22969.476689 eV Core-core repulsion = 19326.038355 eV Total energy + Delta-G solvation = -3643.438334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.88194 -46.89010 -38.86153 -36.78525 -34.25081 -32.04935 -31.21164 -29.95122 -28.09759 -26.70495 -24.52606 -23.25864 -22.94093 -20.93520 -19.54289 -19.14413 -17.49019 -17.11245 -17.06161 -16.42306 -15.64355 -14.89729 -14.58318 -14.25438 -14.00454 -13.93476 -13.78115 -13.54496 -13.28186 -13.22081 -12.78161 -12.37575 -12.15146 -12.07793 -11.76441 -11.70475 -11.33679 -11.24346 -11.10447 -10.95169 -10.74740 -10.59942 -10.47957 -10.42763 -10.33476 -10.14719 -9.85893 -9.13054 -8.56597 -8.07921 -7.76854 -6.17757 -4.23729 3.25696 3.32608 3.36450 3.86839 4.20633 4.33791 4.46376 4.48716 4.67892 4.90609 4.96802 5.09008 5.13723 5.36267 5.46889 5.52225 5.61317 5.70441 5.79429 5.85011 5.91178 5.94902 6.06866 6.12093 6.18177 6.25154 6.26025 6.37854 6.45364 6.54784 6.94964 7.08863 7.31068 7.54906 7.67679 7.73313 7.87357 8.18545 8.77801 9.43345 9.54842 10.89943 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.004722 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.936722 B = 5928.473693 C = 6588.627252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.081 0.919 5 C -0.160 4.160 6 C 0.256 3.744 7 F -0.206 7.206 8 F -0.211 7.211 9 C 0.053 3.947 10 N -0.514 5.514 11 C 0.031 3.969 12 C -0.119 4.119 13 C 0.243 3.757 14 O -0.596 6.596 15 C -0.527 4.527 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.055 3.945 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.384 0.616 39 H 0.266 0.734 40 H 0.034 0.966 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -15.443 -5.101 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.105 4.105 4 H 0.100 0.900 5 C -0.198 4.198 6 C 0.203 3.797 7 F -0.188 7.188 8 F -0.193 7.193 9 C -0.076 4.076 10 N -0.238 5.238 11 C -0.096 4.096 12 C -0.157 4.157 13 C 0.203 3.797 14 O -0.406 6.406 15 C -0.566 4.566 16 H 0.080 0.920 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.475 -15.880 -5.007 16.716 hybrid contribution -0.192 1.329 0.158 1.353 sum 1.283 -14.551 -4.849 15.391 Atomic orbital electron populations 1.21810 0.95497 1.01388 1.02426 1.21676 0.96540 0.96171 1.01791 1.21220 0.93777 0.95891 0.99579 0.90040 1.22640 0.97883 1.05457 0.93820 1.22136 0.75492 0.94147 0.87960 1.92981 1.88245 1.73883 1.63663 1.92967 1.32436 1.96979 1.96908 1.22295 0.98165 0.90795 0.96362 1.64810 1.54899 1.00419 1.03696 1.23291 0.95948 0.96540 0.93845 1.22973 1.01862 0.91733 0.99161 1.19343 0.80518 0.89632 0.90179 1.86077 1.29062 1.37550 1.87884 1.21704 1.18067 0.91380 1.25417 0.92021 1.25011 0.95377 0.98419 0.94563 1.69625 1.34561 1.14736 1.35174 0.86463 0.80539 0.80105 0.80114 1.20537 1.21175 1.19823 1.22839 0.97909 0.94725 0.91753 0.92887 0.92258 0.92589 0.92209 0.91511 0.87543 0.89166 0.87828 0.94428 0.91180 0.91635 0.94955 0.91837 0.91453 0.76504 0.92368 0.94735 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.53 37.16 0.35 -1.09 16 2 C -0.12 -1.13 5.28 -26.73 -0.14 -1.28 16 3 C -0.09 -1.02 1.60 -90.61 -0.14 -1.16 16 4 H 0.08 1.08 6.42 -51.93 -0.33 0.74 16 5 C -0.16 -1.88 4.84 -26.73 -0.13 -2.01 16 6 C 0.26 2.85 5.16 37.16 0.19 3.05 16 7 F -0.21 -2.81 16.93 2.25 0.04 -2.77 16 8 F -0.21 -2.73 17.34 2.25 0.04 -2.69 16 9 C 0.05 0.76 4.08 -3.82 -0.02 0.75 16 10 N -0.51 -9.50 4.63 -230.45 -1.07 -10.57 16 11 C 0.03 0.60 5.34 -1.90 -0.01 0.59 16 12 C -0.12 -2.76 5.49 -24.87 -0.14 -2.90 16 13 C 0.24 6.06 0.99 -90.41 -0.09 5.97 16 14 O -0.60 -15.63 12.93 -35.23 -0.46 -16.09 16 15 C -0.53 -14.23 8.10 -34.44 -0.28 -14.51 16 16 H 0.06 1.66 7.35 -52.49 -0.39 1.28 16 17 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 18 N -0.90 -24.25 10.88 55.43 0.60 -23.65 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.06 1.19 6.17 -2.75 -0.02 1.17 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.60 6.83 -51.93 -0.35 0.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.46 6.22 -51.93 -0.32 0.14 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.11 1.55 7.55 -51.93 -0.39 1.16 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.83 6.24 -51.93 -0.32 0.51 16 32 H 0.04 0.57 6.42 -51.93 -0.33 0.23 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.18 7.59 -51.93 -0.39 0.79 16 35 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 36 H 0.06 1.54 8.06 -51.93 -0.42 1.13 16 37 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 38 H 0.38 10.26 7.05 45.56 0.32 10.58 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.03 0.74 7.49 -51.93 -0.39 0.35 16 41 H 0.08 1.69 7.40 -51.93 -0.38 1.30 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -27.88 324.91 -7.26 -35.14 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.78 Total: 9.57 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.51 Total: -9.71 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.46 Total: -34.22 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.46 Total: -16.09 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.08 Total: -5.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.88 -7.26 -35.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595557202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.054 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds