Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 H 1.09003 * 109.47098 * 305.68246 * 3 2 1 5 5 C 1.53002 * 109.47311 * 185.68027 * 3 2 1 6 6 C 1.52995 * 109.46932 * 65.00056 * 5 3 2 7 7 F 1.39899 * 109.47283 * 64.99890 * 6 5 3 8 8 F 1.39900 * 109.47228 * 185.00032 * 6 5 3 9 9 C 1.53008 * 109.47178 * 65.67896 * 3 2 1 10 10 N 1.46895 * 109.46972 * 182.98910 * 9 3 2 11 11 C 1.48533 * 111.00443 * 58.45198 * 10 9 3 12 12 C 1.54934 * 103.22678 * 159.71550 * 11 10 9 13 13 C 1.54595 * 102.92618 * 322.58989 * 12 11 10 14 14 O 1.42894 * 110.39403 * 262.99646 * 13 12 11 15 15 C 1.50704 * 110.31056 * 140.87200 * 13 12 11 16 16 H 1.08001 * 120.00011 * 244.28848 * 15 13 12 17 17 C 1.37870 * 120.00008 * 64.28469 * 15 13 12 18 18 N 1.31520 * 119.99986 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00115 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47319 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47298 * 210.00045 * 19 17 15 22 22 H 1.48496 * 109.47092 * 330.00036 * 19 17 15 23 23 C 1.47901 * 110.99730 * 175.85162 * 10 9 3 24 24 H 1.09005 * 109.47098 * 173.79411 * 1 2 3 25 25 H 1.09006 * 109.47352 * 293.79604 * 1 2 3 26 26 H 1.09004 * 109.47135 * 53.79390 * 1 2 3 27 27 H 1.09004 * 109.47418 * 239.99936 * 2 1 3 28 28 H 1.08998 * 109.47261 * 119.99753 * 2 1 3 29 29 H 1.09002 * 109.46949 * 184.99685 * 5 3 2 30 30 H 1.09000 * 109.47079 * 304.99889 * 5 3 2 31 31 H 1.08998 * 109.47073 * 304.99855 * 6 5 3 32 32 H 1.08995 * 109.46881 * 302.98925 * 9 3 2 33 33 H 1.08997 * 109.46806 * 62.98574 * 9 3 2 34 34 H 1.08998 * 110.66995 * 278.15723 * 11 10 9 35 35 H 1.09005 * 110.66120 * 41.28414 * 11 10 9 36 36 H 1.08995 * 110.72564 * 204.22500 * 12 11 10 37 37 H 1.09003 * 110.87093 * 81.02000 * 12 11 10 38 38 H 0.96707 * 114.00246 * 295.76518 * 14 13 12 39 39 H 0.97005 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.91810 * 333.50409 * 23 10 9 41 41 H 1.09006 * 109.92075 * 94.60650 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 3.5633 1.4449 -0.1428 6 6 3.9481 0.8795 -1.5114 7 9 3.4808 1.7329 -2.5166 8 9 5.3405 0.7753 -1.5982 9 6 1.6499 2.1214 1.3145 10 7 2.0767 3.5267 1.2853 11 6 1.4609 4.2465 0.1412 12 6 1.5722 5.7347 0.5574 13 6 1.3087 5.6886 2.0801 14 8 -0.0591 5.9947 2.3583 15 6 2.2163 6.6544 2.7974 16 1 2.9573 6.2855 3.4911 17 6 2.1007 8.0090 2.5681 18 7 1.1987 8.4583 1.7229 19 14 3.2261 9.2062 3.4567 20 1 4.4524 9.4259 2.6484 21 1 2.5212 10.4991 3.6482 22 1 3.5995 8.6453 4.7800 23 6 1.6288 4.2420 2.4999 24 1 -0.3633 -1.0217 -0.1111 25 1 -0.3634 0.4147 0.9403 26 1 -0.3633 0.6071 -0.8292 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9350 2.4657 -0.0538 30 1 4.0027 0.8285 0.6416 31 1 3.5015 -0.1070 -1.6356 32 1 0.5685 2.0727 1.4416 33 1 2.1367 1.6109 2.1455 34 1 2.0198 4.0606 -0.7760 35 1 0.4167 3.9573 0.0220 36 1 0.8144 6.3340 0.0528 37 1 2.5696 6.1224 0.3501 38 1 -0.3184 6.8938 2.1143 39 1 1.1177 9.4113 1.5613 40 1 0.7348 3.7659 2.9028 41 1 2.4216 4.2361 3.2480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595557202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -189.238442 kcal Electronic energy + Delta-G solvation = -22970.259126 eV Core-core repulsion = 19326.038355 eV Total energy + Delta-G solvation = -3644.220772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82470 -47.85170 -40.38353 -38.13676 -35.89212 -34.12863 -32.05073 -31.52820 -29.87413 -28.08125 -26.18163 -24.53283 -23.79371 -22.36405 -21.25790 -20.42926 -19.11848 -18.37501 -18.06394 -17.42442 -17.05985 -16.88799 -16.13386 -15.90210 -15.28884 -14.98834 -14.90475 -14.71841 -14.45194 -14.25912 -13.96978 -13.92681 -13.71862 -13.39649 -13.24859 -13.04242 -12.86440 -12.72096 -12.48463 -12.34261 -12.24810 -12.09779 -11.97609 -11.90707 -11.65937 -11.46611 -11.18584 -10.96413 -10.60293 -10.09546 -9.28849 -8.21744 -6.35305 1.40351 1.42062 1.51745 2.39109 2.98105 3.00146 3.15240 3.37816 3.58868 3.76509 3.90948 4.02189 4.08900 4.20016 4.29501 4.34541 4.46488 4.51679 4.54664 4.60606 4.70879 4.79175 4.82012 4.89328 4.90401 5.09334 5.14829 5.17979 5.25434 5.30144 5.38020 5.41276 5.49771 5.60402 5.77413 5.99086 6.15569 6.27664 6.69352 7.34819 7.44384 8.84361 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.004722 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.936722 B = 5928.473693 C = 6588.627252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.078 4.078 4 H 0.067 0.933 5 C -0.157 4.157 6 C 0.254 3.746 7 F -0.223 7.223 8 F -0.222 7.222 9 C 0.051 3.949 10 N -0.514 5.514 11 C 0.047 3.953 12 C -0.112 4.112 13 C 0.226 3.774 14 O -0.603 6.603 15 C -0.553 4.553 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.917 5.917 19 Si 0.960 3.040 20 H -0.276 1.276 21 H -0.280 1.280 22 H -0.271 1.271 23 C 0.063 3.937 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.377 0.623 39 H 0.269 0.731 40 H 0.034 0.966 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -17.360 -5.223 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.097 4.097 4 H 0.086 0.914 5 C -0.195 4.195 6 C 0.201 3.799 7 F -0.204 7.204 8 F -0.204 7.204 9 C -0.077 4.077 10 N -0.238 5.238 11 C -0.081 4.081 12 C -0.151 4.151 13 C 0.186 3.814 14 O -0.412 6.412 15 C -0.591 4.591 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.557 5.557 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.065 4.065 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.163 0.837 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.958 -17.816 -5.134 18.644 hybrid contribution -0.359 1.922 0.205 1.966 sum 1.599 -15.894 -4.928 16.717 Atomic orbital electron populations 1.21823 0.95791 1.02231 1.01448 1.21666 0.96197 0.94091 1.03614 1.21145 0.93828 0.97484 0.97239 0.91426 1.22585 0.97708 1.04097 0.95117 1.22500 0.74985 0.95539 0.86915 1.92951 1.88392 1.74730 1.64376 1.92946 1.33523 1.97035 1.96889 1.22437 0.98226 0.88347 0.98692 1.64793 1.54870 1.02244 1.01904 1.23117 0.96507 0.93776 0.94659 1.22763 0.99762 0.94255 0.98352 1.19620 0.79517 0.91241 0.90977 1.86070 1.30006 1.37057 1.88060 1.21971 1.18685 0.92475 1.25975 0.92748 1.25704 0.96641 0.99809 0.95184 1.69708 1.35276 1.15080 1.35656 0.85532 0.78816 0.78117 0.78991 1.20219 1.20573 1.19614 1.22659 0.97672 0.93180 0.92955 0.91164 0.93431 0.93426 0.89997 0.90022 0.90717 0.87280 0.83699 0.94633 0.89754 0.90124 0.94622 0.93601 0.93680 0.77223 0.92187 0.94764 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.53 71.98 0.69 -1.81 16 2 C -0.12 -1.72 5.28 30.59 0.16 -1.56 16 3 C -0.08 -1.67 1.60 -10.79 -0.02 -1.68 16 4 H 0.07 1.66 6.42 -2.39 -0.02 1.64 16 5 C -0.16 -3.35 4.84 30.59 0.15 -3.20 16 6 C 0.25 4.99 5.16 71.98 0.37 5.36 16 7 F -0.22 -5.71 16.93 44.97 0.76 -4.95 16 8 F -0.22 -5.30 17.34 44.97 0.78 -4.52 16 9 C 0.05 1.39 4.08 86.31 0.35 1.74 16 10 N -0.51 -18.69 4.63 -883.01 -4.09 -22.79 16 11 C 0.05 1.81 5.34 86.65 0.46 2.27 16 12 C -0.11 -5.37 5.49 31.80 0.17 -5.20 16 13 C 0.23 11.48 0.99 -10.66 -0.01 11.47 16 14 O -0.60 -32.30 12.93 -148.98 -1.93 -34.22 16 15 C -0.55 -30.39 8.10 25.60 0.21 -30.18 16 16 H 0.05 2.99 7.35 -2.91 -0.02 2.96 16 17 C 0.03 1.42 5.26 84.65 0.45 1.86 16 18 N -0.92 -50.13 10.88 21.45 0.23 -49.90 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 C 0.06 2.74 6.17 86.45 0.53 3.27 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 0.87 6.83 -2.38 -0.02 0.85 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 0.87 6.22 -2.38 -0.01 0.86 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 2.10 7.55 -2.39 -0.02 2.08 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.15 1.69 6.24 -2.39 -0.01 1.68 16 32 H 0.04 1.01 6.42 -2.39 -0.02 0.99 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.86 7.59 -2.39 -0.02 2.85 16 35 H 0.04 1.35 8.01 -2.38 -0.02 1.33 16 36 H 0.05 2.30 8.06 -2.39 -0.02 2.28 16 37 H 0.04 2.30 7.86 -2.39 -0.02 2.29 16 38 H 0.38 20.78 7.05 -74.05 -0.52 20.26 16 39 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 40 H 0.03 1.46 7.49 -2.39 -0.02 1.44 16 41 H 0.07 3.19 7.40 -2.38 -0.02 3.17 16 Total: -1.00 -60.57 324.91 1.80 -58.76 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.50 Total: 30.15 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.51 Total: -17.66 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -3.86 Total: -72.68 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.93 Total: -34.22 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 1.54 Total: -9.47 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -60.57 1.80 -58.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595557202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.475 kcal (2) G-P(sol) polarization free energy of solvation -60.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds