Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47184 * 2 1 4 4 N 1.46509 * 109.47051 * 119.99766 * 2 1 3 5 5 C 1.46498 * 119.99859 * 302.11166 * 4 2 1 6 6 C 1.50699 * 109.47340 * 270.00419 * 5 4 2 7 7 H 1.07996 * 120.00025 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00306 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99622 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47429 * 89.99471 * 10 8 6 12 12 H 1.48500 * 109.46839 * 209.99419 * 10 8 6 13 13 H 1.48504 * 109.47065 * 329.99028 * 10 8 6 14 14 C 1.34771 * 119.99793 * 122.11681 * 4 2 1 15 15 O 1.21685 * 119.99741 * 184.94391 * 14 4 2 16 16 C 1.46765 * 120.00139 * 4.94077 * 14 4 2 17 17 C 1.36550 * 126.84113 * 121.58920 * 16 14 4 18 18 N 1.33165 * 107.80062 * 179.97438 * 17 16 14 19 19 C 1.31368 * 109.76525 * 359.91275 * 18 17 16 20 20 N 1.34264 * 108.98070 * 0.18403 * 19 18 17 21 21 C 1.46998 * 111.33293 * 179.71269 * 20 19 18 22 22 C 1.54399 * 105.48168 * 17.09549 * 21 20 19 23 23 C 1.51649 * 141.06355 * 180.18388 * 19 18 17 24 24 H 1.09005 * 109.46654 * 300.00101 * 1 2 3 25 25 H 1.08997 * 109.47252 * 60.00095 * 1 2 3 26 26 H 1.08996 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47229 * 239.99810 * 2 1 3 28 28 H 1.08999 * 109.47123 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46893 * 299.99459 * 3 2 1 30 30 H 1.09001 * 109.47650 * 59.99942 * 3 2 1 31 31 H 1.09004 * 109.47082 * 30.00082 * 5 4 2 32 32 H 1.09000 * 109.46826 * 150.00103 * 5 4 2 33 33 H 0.97005 * 120.00060 * 180.02562 * 9 8 6 34 34 H 1.08006 * 126.10357 * 359.93439 * 17 16 14 35 35 H 1.09006 * 110.23794 * 136.09019 * 21 20 19 36 36 H 1.08999 * 110.24471 * 258.00095 * 21 20 19 37 37 H 1.08996 * 110.97960 * 216.24610 * 22 21 20 38 38 H 1.09003 * 110.98652 * 92.45423 * 22 21 20 39 39 H 1.09003 * 110.48217 * 282.15786 * 23 19 18 40 40 H 1.08994 * 110.48182 * 44.78765 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6266 -0.2176 2.5263 6 6 2.6269 0.7993 3.0126 7 1 3.4702 1.0663 2.3931 8 6 2.4659 1.3882 4.2488 9 7 1.4391 1.0628 5.0035 10 14 3.7061 2.6482 4.8519 11 1 3.2800 4.0055 4.4258 12 1 3.7837 2.5962 6.3339 13 1 5.0405 2.3445 4.2753 14 6 2.8280 -1.7610 1.0731 15 8 3.1609 -2.3888 2.0608 16 6 3.3081 -2.1693 -0.2524 17 6 4.6085 -2.2791 -0.6541 18 7 4.6097 -2.6767 -1.9250 19 6 3.3740 -2.8254 -2.3452 20 7 2.5327 -2.5196 -1.3445 21 6 1.1306 -2.6624 -1.7622 22 6 1.1679 -3.5215 -3.0445 23 6 2.5875 -3.2254 -3.5785 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 0.6392 0.2410 2.4726 32 1 1.5991 -1.0597 3.2178 33 1 1.3256 1.4773 5.8731 34 1 5.4805 -2.0784 -0.0493 35 1 0.5556 -3.1678 -0.9862 36 1 0.6987 -1.6843 -1.9742 37 1 0.4079 -3.1959 -3.7546 38 1 1.0522 -4.5795 -2.8091 39 1 2.5614 -2.4059 -4.2967 40 1 3.0180 -4.1180 -4.0325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597041477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 16.926468 kcal Electronic energy + Delta-G solvation = -22574.032701 eV Core-core repulsion = 19389.441097 eV Total energy + Delta-G solvation = -3184.591604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.63791 -40.63584 -37.90952 -37.18617 -35.01031 -33.01003 -32.60723 -30.31307 -29.24281 -28.47645 -27.87348 -25.44212 -23.54995 -23.10049 -22.29118 -21.12529 -19.78919 -18.85806 -18.64820 -17.39959 -17.18514 -16.62318 -16.25930 -15.76455 -15.30442 -15.08964 -14.96859 -14.83604 -14.39588 -14.27151 -14.12611 -13.95679 -13.44241 -13.29516 -13.17370 -12.98048 -12.82970 -12.57551 -12.51664 -12.31113 -12.18392 -11.98128 -11.75778 -11.63457 -11.33023 -10.91916 -10.64829 -10.63569 -9.67443 -9.41043 -8.24038 -6.36020 0.52498 1.29571 1.34759 1.37599 1.47587 1.80204 1.93111 2.30508 2.39212 2.86905 3.06326 3.36938 3.57889 3.80222 3.82206 3.93165 4.13042 4.25128 4.32246 4.43198 4.46785 4.58315 4.70043 4.74595 4.86289 4.89488 4.91466 4.99016 5.01746 5.11034 5.14455 5.16349 5.34026 5.43460 5.51646 5.56725 5.77032 5.96753 6.04092 6.54698 6.70355 6.91249 7.12764 7.34688 8.83713 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.005448 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.394908 B = 5138.558894 C = 5492.196057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 C -0.151 4.151 4 N -0.580 5.580 5 C 0.263 3.737 6 C -0.532 4.532 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.576 3.424 15 O -0.585 6.585 16 C -0.063 4.063 17 C 0.029 3.971 18 N -0.513 5.513 19 C 0.204 3.796 20 N -0.461 5.461 21 C 0.076 3.924 22 C -0.110 4.110 23 C -0.037 4.037 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.036 0.964 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 -4.663 -22.039 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.142 3.858 6 C -0.571 4.571 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.363 3.637 15 O -0.465 6.465 16 C -0.179 4.179 17 C -0.123 4.123 18 N -0.233 5.233 19 C -0.059 4.059 20 N -0.145 5.145 21 C -0.044 4.044 22 C -0.148 4.148 23 C -0.076 4.076 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.192 0.808 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.147 -5.011 -21.652 22.812 hybrid contribution 0.333 0.810 2.102 2.277 sum -4.814 -4.201 -19.550 20.567 Atomic orbital electron populations 1.22175 0.92868 1.02647 1.03721 1.21483 0.95935 0.93959 0.86619 1.22070 1.00245 0.95672 1.02897 1.48328 1.45844 1.27731 1.09072 1.18804 0.95553 0.93157 0.78262 1.21599 1.09972 1.22975 1.02532 0.93065 1.25753 0.97500 0.99062 0.96407 1.70039 1.30639 1.44281 1.11660 0.85508 0.79033 0.79422 0.77443 1.18760 1.20637 1.20097 1.17480 0.78734 0.80772 0.86744 1.90768 1.58996 1.56332 1.40408 1.20521 0.92426 1.16223 0.88736 1.22480 0.94418 1.02890 0.92518 1.69710 1.21192 1.21550 1.10834 1.25625 0.85947 1.00739 0.93633 1.46723 1.10352 1.48394 1.09060 1.23141 0.77312 1.04209 0.99695 1.22872 0.97029 1.00858 0.93994 1.21086 0.91611 1.05056 0.89811 0.93429 0.87686 0.92045 0.88892 0.94656 0.89063 0.92817 0.94590 0.98540 0.92426 0.80800 0.89625 0.86729 0.83523 0.88714 0.85637 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 8.34 71.98 0.60 -3.48 16 2 C 0.12 4.02 2.81 44.99 0.13 4.15 16 3 C -0.15 -5.04 8.53 71.98 0.61 -4.42 16 4 N -0.58 -25.85 2.39 -806.72 -1.93 -27.77 16 5 C 0.26 14.25 4.69 85.63 0.40 14.65 16 6 C -0.53 -30.71 7.83 25.60 0.20 -30.50 16 7 H 0.05 2.98 7.61 -2.91 -0.02 2.96 16 8 C 0.01 0.68 5.46 84.65 0.46 1.15 16 9 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 10 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.58 27.18 7.57 86.47 0.65 27.84 16 15 O -0.58 -33.42 16.66 -4.30 -0.07 -33.50 16 16 C -0.06 -2.42 5.61 39.93 0.22 -2.20 16 17 C 0.03 1.10 11.85 84.10 1.00 2.10 16 18 N -0.51 -17.17 11.21 -186.46 -2.09 -19.26 16 19 C 0.20 5.18 8.56 138.42 1.19 6.37 16 20 N -0.46 -12.67 2.66 -496.46 -1.32 -13.99 16 21 C 0.08 1.22 6.64 86.76 0.58 1.80 16 22 C -0.11 -0.74 7.18 31.59 0.23 -0.51 16 23 C -0.04 -0.40 6.86 30.67 0.21 -0.19 16 24 H 0.05 1.51 6.59 -2.38 -0.02 1.50 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.46 7.74 -2.39 -0.02 1.45 16 27 H 0.09 2.70 3.84 -2.39 -0.01 2.69 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.05 2.11 6.92 -2.39 -0.02 2.09 16 31 H 0.04 1.94 6.32 -2.39 -0.02 1.93 16 32 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 33 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.17 6.43 8.06 -2.91 -0.02 6.41 16 35 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 1.42 6.28 -2.39 -0.02 1.41 16 37 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -82.46 323.16 4.42 -78.04 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.04 Total: 7.84 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.48 Total: 16.73 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.05 Total: -116.57 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.07 Total: -33.50 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -82.46 4.42 -78.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.967 kcal (2) G-P(sol) polarization free energy of solvation -82.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds