Wall clock time and date at job start Mon Mar 30 2020 02:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 H 1.09001 * 109.47216 * 305.00206 * 3 2 1 5 5 C 1.50696 * 109.46908 * 185.00039 * 3 2 1 6 6 H 1.07992 * 120.00065 * 239.99492 * 5 3 2 7 7 C 1.37884 * 120.00151 * 60.00421 * 5 3 2 8 8 N 1.31514 * 119.99346 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47264 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47184 * 119.99885 * 9 7 5 12 12 H 1.48500 * 109.46834 * 239.99478 * 9 7 5 13 13 N 1.46501 * 109.47193 * 64.99995 * 3 2 1 14 14 C 1.34773 * 120.00131 * 274.99924 * 13 3 2 15 15 O 1.21284 * 119.99880 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00120 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47522 * 60.00124 * 16 14 13 18 18 C 1.53123 * 109.47623 * 180.02562 * 16 14 13 19 19 C 1.53354 * 109.52830 * 190.00912 * 18 16 14 20 20 C 1.50860 * 108.41927 * 310.02713 * 19 18 16 21 21 N 1.33569 * 128.03857 * 196.64263 * 20 19 18 22 22 C 1.30751 * 109.15178 * 179.97438 * 21 20 19 23 23 N 1.35309 * 108.76565 * 0.02562 * 22 21 20 24 24 H 0.96998 * 126.49360 * 180.02562 * 23 22 21 25 25 C 1.35029 * 123.98638 * 16.64654 * 20 19 18 26 26 C 1.50656 * 124.45357 * 0.18490 * 25 20 19 27 27 H 1.09001 * 109.46964 * 300.00272 * 1 2 3 28 28 H 1.09000 * 109.47268 * 59.99985 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46648 * 240.00049 * 2 1 3 31 31 H 1.09000 * 109.47268 * 120.00015 * 2 1 3 32 32 H 0.97004 * 119.99272 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99744 * 95.00083 * 13 3 2 34 34 H 1.08996 * 109.46344 * 310.02976 * 18 16 14 35 35 H 1.08999 * 109.45615 * 70.01139 * 18 16 14 36 36 H 1.09003 * 109.67043 * 69.76341 * 19 18 16 37 37 H 1.08994 * 109.67503 * 190.25546 * 19 18 16 38 38 H 1.08003 * 125.61679 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.68082 * 256.67966 * 26 25 20 40 40 H 1.08997 * 109.68655 * 136.12648 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5472 -0.1949 11 1 6.4971 -0.5174 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3396 2.6319 0.4344 16 6 0.0363 3.3376 2.6548 17 1 0.7276 4.1530 2.8680 18 6 -1.3840 3.8940 2.5215 19 6 -1.6991 4.7892 3.7261 20 6 -1.3492 4.0350 4.9849 21 7 -1.7338 4.2992 6.2365 22 6 -1.2157 3.4086 7.0415 23 7 -0.4759 2.5412 6.3127 24 1 0.0207 1.7800 6.6517 25 6 -0.5615 2.9387 5.0137 26 6 0.0800 2.3179 3.8000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0617 -2.9496 33 1 2.2720 2.1232 1.9978 34 1 -1.4605 4.4785 1.6047 35 1 -2.0954 3.0688 2.4866 36 1 -1.1074 5.7028 3.6690 37 1 -2.7601 5.0389 3.7302 38 1 -1.3552 3.3715 8.1118 39 1 -0.4684 1.4205 3.5135 40 1 1.1153 2.0605 4.0231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:04 Heat of formation + Delta-G solvation = -22.999899 kcal Electronic energy + Delta-G solvation = -21847.069945 eV Core-core repulsion = 18660.747004 eV Total energy + Delta-G solvation = -3186.322941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.18541 -40.87182 -37.55396 -36.55251 -34.37926 -34.00002 -32.77456 -30.83584 -30.13394 -28.74510 -25.34652 -24.77547 -23.70024 -22.46247 -21.80408 -21.00722 -19.88714 -18.94244 -18.55552 -17.43544 -17.12924 -16.55822 -16.20265 -15.97177 -15.36516 -14.99449 -14.86488 -14.65144 -14.55375 -14.15731 -13.97244 -13.50923 -13.42080 -13.17061 -12.87608 -12.80666 -12.67995 -12.52736 -12.12804 -12.01937 -11.93933 -11.85600 -11.55374 -11.00970 -10.84437 -10.75744 -10.58543 -10.42416 -9.56788 -9.08378 -8.14211 -6.31028 1.11491 1.44433 1.46453 1.57334 1.85554 2.17480 2.28450 2.39049 2.69318 3.15576 3.52719 3.76416 3.85998 3.90447 4.22147 4.29085 4.36588 4.48887 4.53084 4.59454 4.60446 4.67117 4.78878 4.82125 4.95621 5.09428 5.10693 5.17686 5.29626 5.33184 5.37885 5.47608 5.59904 5.67688 5.81395 5.83908 5.97237 6.20951 6.63009 6.78312 7.05444 7.17568 7.36667 7.65239 8.91080 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.004143 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.396512 B = 6756.470365 C = 7103.142790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.703 5.703 14 C 0.505 3.495 15 O -0.584 6.584 16 C -0.089 4.089 17 H 0.112 0.888 18 C -0.090 4.090 19 C -0.027 4.027 20 C -0.020 4.020 21 N -0.530 5.530 22 C 0.187 3.813 23 N -0.549 5.549 24 H 0.437 0.563 25 C -0.027 4.027 26 C -0.024 4.024 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.077 0.923 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 2.909 18.352 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.352 5.352 14 C 0.292 3.708 15 O -0.464 6.464 16 C -0.111 4.111 17 H 0.130 0.870 18 C -0.128 4.128 19 C -0.066 4.066 20 C -0.149 4.149 21 N -0.250 5.250 22 C -0.097 4.097 23 N -0.153 5.153 24 H 0.278 0.722 25 C -0.144 4.144 26 C -0.063 4.063 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.805 3.459 17.744 18.987 hybrid contribution 1.768 -1.122 -0.385 2.128 sum -4.038 2.337 17.359 17.975 Atomic orbital electron populations 1.21684 0.97014 0.99007 1.00365 1.21767 0.93670 0.99178 1.01243 1.18351 0.93481 0.89199 0.81629 0.98490 1.21623 0.91579 1.38596 1.06557 0.91040 1.25743 1.03052 0.94518 0.95131 1.70060 1.36881 1.38497 1.09903 0.85367 0.79483 0.77738 0.78154 1.18425 1.20558 1.21241 1.46261 1.15605 1.55952 1.17381 1.20957 0.81661 0.78354 0.89817 1.90663 1.52483 1.60826 1.42467 1.21260 0.99953 0.98857 0.91049 0.86966 1.21309 0.94155 0.99413 0.97950 1.19899 1.02094 0.96904 0.87663 1.20758 1.02222 0.98121 0.93848 1.69938 1.26034 1.27321 1.01665 1.25808 0.95228 0.88345 1.00291 1.42891 1.39996 1.26331 1.06040 0.72224 1.20817 1.06459 1.00524 0.86588 1.19906 1.01527 0.96739 0.88141 0.93407 0.95754 0.93816 0.91292 0.93897 0.92717 0.76278 0.91048 0.92309 0.90010 0.90209 0.73648 0.90476 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.52 71.98 0.61 -4.78 16 2 C -0.12 -5.70 5.45 30.60 0.17 -5.53 16 3 C 0.28 13.70 2.24 44.24 0.10 13.80 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -27.98 8.73 25.60 0.22 -27.76 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.91 -51.61 11.29 21.45 0.24 -51.36 16 9 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.70 -27.03 4.93 -446.10 -2.20 -29.23 16 14 C 0.51 18.53 5.70 87.66 0.50 19.03 16 15 O -0.58 -26.45 12.95 -3.04 -0.04 -26.49 16 16 C -0.09 -2.36 2.50 -11.37 -0.03 -2.39 16 17 H 0.11 2.65 8.12 -2.39 -0.02 2.63 16 18 C -0.09 -2.39 4.64 30.75 0.14 -2.25 16 19 C -0.03 -0.65 6.30 30.02 0.19 -0.46 16 20 C -0.02 -0.51 6.98 41.61 0.29 -0.22 16 21 N -0.53 -13.20 11.25 -187.90 -2.11 -15.32 16 22 C 0.19 3.03 13.05 180.10 2.35 5.38 16 23 N -0.55 -8.18 6.14 -186.45 -1.15 -9.32 16 24 H 0.44 3.33 8.96 -92.71 -0.83 2.50 16 25 C -0.03 -0.57 7.08 41.14 0.29 -0.28 16 26 C -0.02 -0.53 5.43 29.97 0.16 -0.36 16 27 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 28 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 29 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.40 12.86 8.21 -92.71 -0.76 12.10 16 34 H 0.07 2.06 7.77 -2.39 -0.02 2.04 16 35 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.25 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.08 1.79 8.11 -2.38 -0.02 1.77 16 40 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 Total: -1.00 -70.52 320.21 1.69 -68.83 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.53 Total: 24.14 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.45 Total: -4.55 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -5.21 Total: -105.23 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.04 Total: -26.49 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.52 1.69 -68.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.829 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds