Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 N 1.46497 * 109.47475 * 180.02562 * 16 14 13 18 18 C 1.34949 * 126.03876 * 124.99888 * 17 16 14 19 19 C 1.35319 * 107.74343 * 179.97438 * 18 17 16 20 20 C 1.50701 * 126.03567 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.49772 * 188.62512 * 20 19 18 22 22 C 1.53002 * 117.50152 * 120.00068 * 20 19 18 23 23 C 1.39866 * 107.92321 * 0.02562 * 19 18 17 24 24 N 1.30838 * 108.20181 * 359.74076 * 23 19 18 25 25 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.07997 * 126.12655 * 359.96136 * 18 17 16 35 35 H 1.09002 * 115.54772 * 334.32523 * 20 19 18 36 36 H 1.09003 * 117.50235 * 359.97438 * 21 20 19 37 37 H 1.09000 * 117.50030 * 145.01939 * 21 20 19 38 38 H 1.08995 * 117.49819 * 214.97840 * 22 20 19 39 39 H 1.08996 * 117.49440 * 359.97422 * 22 20 19 40 40 H 1.08000 * 125.89956 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 7 -1.2994 3.8616 2.5657 18 6 -2.3301 3.5901 3.3934 19 6 -3.4083 4.2757 2.9481 20 6 -4.7811 4.2703 3.5698 21 6 -5.9099 4.9538 2.7955 22 6 -5.3416 5.6082 4.0564 23 6 -3.0237 4.9902 1.8089 24 7 -1.7584 4.7469 1.5817 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -2.2997 2.9416 4.2565 35 1 -5.0328 3.3798 4.1458 36 1 -5.6596 5.4077 1.8366 37 1 -6.9046 4.5129 2.8620 38 1 -5.9623 5.5979 4.9522 39 1 -4.7172 6.4922 3.9272 40 1 -3.6601 5.6347 1.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = 42.426381 kcal Electronic energy + Delta-G solvation = -21285.250093 eV Core-core repulsion = 18101.764248 eV Total energy + Delta-G solvation = -3183.485845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24465 -40.66052 -37.85709 -37.07192 -34.52424 -34.17396 -33.02551 -31.03001 -29.52457 -27.98650 -24.35727 -23.76464 -23.24924 -22.86586 -21.69561 -21.28511 -20.63436 -19.73560 -18.06994 -17.92679 -17.14430 -16.69562 -16.23434 -15.73638 -15.56100 -15.22978 -14.96511 -14.63428 -14.51732 -14.38264 -14.15223 -13.79878 -13.57302 -13.19797 -12.80842 -12.73462 -12.52292 -12.34170 -12.26203 -11.82556 -11.72278 -11.44354 -11.35216 -11.15362 -11.08799 -10.94695 -10.51281 -10.27841 -9.83526 -9.09246 -8.80899 -6.46491 0.96437 1.41197 1.46624 1.51874 1.65332 1.69455 1.83755 2.36832 2.44372 2.98641 3.22713 3.59181 3.81830 3.98902 4.04611 4.14807 4.16359 4.27957 4.29824 4.31656 4.36608 4.51326 4.56681 4.78287 4.82523 4.90127 5.05846 5.09727 5.18193 5.18300 5.25159 5.38224 5.43622 5.51704 5.62195 5.65088 5.72682 5.99510 6.11419 6.51753 6.80269 6.82044 7.26172 7.42311 8.58331 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.003638 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.425576 B = 7694.300387 C = 7854.480956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.255 3.745 4 H 0.014 0.986 5 C -0.611 4.611 6 H 0.044 0.956 7 C -0.003 4.003 8 N -0.928 5.928 9 Si 1.068 2.932 10 H -0.281 1.281 11 H -0.245 1.245 12 H -0.281 1.281 13 N -0.700 5.700 14 C 0.485 3.515 15 O -0.562 6.562 16 C 0.119 3.881 17 N -0.366 5.366 18 C 0.060 3.940 19 C -0.217 4.217 20 C -0.079 4.079 21 C -0.180 4.180 22 C -0.169 4.169 23 C 0.033 3.967 24 N -0.319 5.319 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.407 0.593 32 H 0.169 0.831 33 H 0.129 0.871 34 H 0.212 0.788 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 5.142 14.802 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C 0.150 3.850 4 H 0.032 0.968 5 C -0.649 4.649 6 H 0.063 0.937 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.170 1.170 12 H -0.207 1.207 13 N -0.350 5.350 14 C 0.270 3.730 15 O -0.441 6.441 16 C -0.006 4.006 17 N -0.148 5.148 18 C -0.085 4.085 19 C -0.228 4.228 20 C -0.098 4.098 21 C -0.217 4.217 22 C -0.206 4.206 23 C -0.153 4.153 24 N -0.140 5.140 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.242 0.758 32 H 0.186 0.814 33 H 0.147 0.853 34 H 0.229 0.771 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.369 4.769 11.827 22.362 hybrid contribution 0.321 0.547 2.030 2.126 sum -18.048 5.316 13.857 23.367 Atomic orbital electron populations 1.21725 0.95772 1.00160 1.01031 1.22234 0.95016 0.98317 1.01707 1.18690 0.93378 0.89602 0.83370 0.96825 1.22291 0.91461 1.47904 1.03229 0.93730 1.26683 0.97700 0.92292 1.03782 1.70968 1.07988 1.43300 1.34108 0.83738 0.75201 0.78331 0.73544 1.20710 1.16994 1.20657 1.45984 1.15298 1.56377 1.17358 1.21162 0.82191 0.79063 0.90598 1.90737 1.51661 1.59461 1.42229 1.21739 0.80874 1.01179 0.96796 1.48088 1.09501 1.35831 1.21393 1.22857 0.86568 1.01325 0.97701 1.19559 0.96359 1.06806 1.00095 1.20229 0.88825 0.97539 1.03205 1.23035 0.98057 1.04276 0.96298 1.23032 1.03353 0.95699 0.98522 1.24053 0.92725 1.00842 0.97683 1.77471 1.13989 1.10846 1.11656 0.93266 0.95000 0.92544 0.92562 0.92086 0.93109 0.75781 0.81363 0.85344 0.77148 0.85976 0.89377 0.87406 0.87188 0.89704 0.79584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.41 16 2 C -0.13 -5.72 5.28 30.59 0.16 -5.56 16 3 C 0.25 11.83 1.82 44.24 0.08 11.91 16 4 H 0.01 0.73 6.26 -2.39 -0.01 0.72 16 5 C -0.61 -32.70 9.01 25.60 0.23 -32.47 16 6 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 7 C 0.00 -0.20 5.32 84.66 0.45 0.25 16 8 N -0.93 -55.85 13.69 21.45 0.29 -55.56 16 9 Si 1.07 51.13 26.27 68.60 1.80 52.93 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.25 -10.72 5.67 99.48 0.56 -10.16 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.70 -25.82 5.03 -446.11 -2.24 -28.07 16 14 C 0.48 16.98 6.46 87.66 0.57 17.55 16 15 O -0.56 -25.00 12.86 -3.03 -0.04 -25.04 16 16 C 0.12 2.74 6.99 85.63 0.60 3.33 16 17 N -0.37 -10.01 3.40 -351.80 -1.19 -11.21 16 18 C 0.06 1.27 11.36 83.54 0.95 2.22 16 19 C -0.22 -4.87 5.76 -20.14 -0.12 -4.98 16 20 C -0.08 -1.28 6.25 -11.54 -0.07 -1.35 16 21 C -0.18 -2.63 10.02 30.59 0.31 -2.33 16 22 C -0.17 -2.32 10.23 30.60 0.31 -2.01 16 23 C 0.03 0.92 11.35 85.24 0.97 1.89 16 24 N -0.32 -10.87 11.66 -57.03 -0.66 -11.54 16 25 H 0.05 1.86 5.63 -2.38 -0.01 1.84 16 26 H 0.03 1.34 7.88 -2.39 -0.02 1.32 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 2.54 4.74 -2.38 -0.01 2.53 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.26 15.54 8.73 -92.71 -0.81 14.73 16 31 H 0.41 12.58 8.53 -92.71 -0.79 11.79 16 32 H 0.17 2.15 8.07 -2.39 -0.02 2.14 16 33 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.40 6.97 -2.39 -0.02 1.38 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.19 4.30 7.19 -2.91 -0.02 4.28 16 Total: -1.00 -75.32 328.16 3.08 -72.23 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.08 Total: 22.18 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 5.05 Total: -15.95 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -3.81 Total: -106.37 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 1.80 Total: 52.93 kcal Total: -75.32 3.08 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.660 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds