Wall clock time and date at job start Mon Mar 30 2020 02:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31514 * 120.00035 * 179.72339 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 359.72191 * 7 5 3 10 10 H 1.48500 * 109.46986 * 90.00256 * 9 7 5 11 11 H 1.48496 * 109.47029 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47352 * 330.00102 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 C 1.34939 * 126.03930 * 124.99853 * 17 16 14 19 19 C 1.35320 * 107.74738 * 179.97438 * 18 17 16 20 20 C 1.50695 * 126.04148 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49872 * 188.61948 * 20 19 18 22 22 C 1.53001 * 117.50271 * 119.99348 * 20 19 18 23 23 C 1.39871 * 107.91745 * 359.97438 * 19 18 17 24 24 N 1.30834 * 108.20505 * 359.74077 * 23 19 18 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 32 32 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 33 33 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 34 34 H 1.08000 * 126.12723 * 359.94795 * 18 17 16 35 35 H 1.09000 * 115.55318 * 334.32439 * 20 19 18 36 36 H 1.08994 * 117.50170 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.50123 * 145.02289 * 21 20 19 38 38 H 1.08996 * 117.50178 * 214.97552 * 22 20 19 39 39 H 1.09003 * 117.49583 * 359.97438 * 22 20 19 40 40 H 1.08008 * 125.89863 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 5.4542 0.8753 1.3334 9 14 3.0961 0.1164 2.5740 10 1 2.8687 -1.3195 2.2711 11 1 3.7966 0.2424 3.8773 12 1 1.7904 0.8204 2.6439 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 6 -1.6984 5.1480 -2.7428 19 6 -3.0307 5.2295 -2.5204 20 6 -3.8759 6.4710 -2.6438 21 6 -5.3230 6.3920 -2.1534 22 6 -5.0253 6.4457 -3.6533 23 6 -3.4849 3.9575 -2.1569 24 7 -2.4630 3.1404 -2.1663 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 5.8773 0.4775 2.1104 31 1 2.2719 2.1232 -1.9978 32 1 0.7275 4.1530 -2.8679 33 1 0.0672 2.6131 -3.4684 34 1 -1.0515 5.9604 -3.0393 35 1 -3.3482 7.4146 -2.5056 36 1 -5.6639 5.4420 -1.7420 37 1 -5.7476 7.2838 -1.6924 38 1 -5.2540 7.3728 -4.1789 39 1 -5.1699 5.5312 -4.2285 40 1 -4.5041 3.6941 -1.9151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:33 Heat of formation + Delta-G solvation = 49.592340 kcal Electronic energy + Delta-G solvation = -21288.827092 eV Core-core repulsion = 18105.651987 eV Total energy + Delta-G solvation = -3183.175105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22303 -40.66087 -37.85362 -37.10981 -34.46251 -34.14874 -33.07172 -31.01698 -29.71009 -28.09540 -24.65384 -23.75361 -23.27691 -22.92002 -21.76432 -21.29105 -20.57344 -19.14028 -18.04037 -17.77018 -17.31188 -16.64405 -16.34117 -16.14054 -15.56896 -15.17608 -15.05754 -14.91189 -14.45051 -14.29712 -13.87740 -13.72151 -13.56332 -13.23861 -12.99070 -12.81228 -12.76941 -12.42685 -12.25790 -11.89607 -11.72036 -11.43126 -11.35035 -11.26169 -11.08515 -10.94164 -10.87367 -10.23847 -9.79531 -9.06929 -8.40650 -6.45225 0.97823 1.23694 1.32308 1.41624 1.54563 1.71593 1.85265 2.23046 2.43867 2.95411 3.23371 3.60783 3.83661 4.02564 4.06583 4.15318 4.18933 4.21581 4.28561 4.31166 4.33351 4.44096 4.57844 4.79221 4.82779 4.90498 4.96583 5.08612 5.10651 5.19314 5.19968 5.38566 5.38663 5.44363 5.47874 5.63338 5.73912 6.07753 6.17256 6.57342 6.82282 6.85863 7.18180 7.45417 8.74302 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036977 B = 0.003621 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.037966 B = 7730.016586 C = 7937.494685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 C 0.254 3.746 4 H 0.017 0.983 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.261 1.261 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.697 5.697 14 C 0.486 3.514 15 O -0.564 6.564 16 C 0.119 3.881 17 N -0.366 5.366 18 C 0.058 3.942 19 C -0.217 4.217 20 C -0.080 4.080 21 C -0.180 4.180 22 C -0.168 4.168 23 C 0.033 3.967 24 N -0.313 5.313 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.270 0.730 31 H 0.411 0.589 32 H 0.166 0.834 33 H 0.136 0.864 34 H 0.210 0.790 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.403 10.127 -12.575 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.035 0.965 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.192 1.192 13 N -0.348 5.348 14 C 0.271 3.729 15 O -0.443 6.443 16 C -0.006 4.006 17 N -0.148 5.148 18 C -0.087 4.087 19 C -0.229 4.229 20 C -0.099 4.099 21 C -0.217 4.217 22 C -0.205 4.205 23 C -0.154 4.154 24 N -0.134 5.134 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.247 0.753 32 H 0.183 0.817 33 H 0.154 0.846 34 H 0.226 0.774 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.232 8.775 -11.628 21.810 hybrid contribution 0.101 0.127 0.701 0.720 sum -16.130 8.902 -10.927 21.420 Atomic orbital electron populations 1.21712 0.95488 1.00182 1.01302 1.22214 0.95408 0.98799 1.01069 1.18712 0.93205 0.89373 0.83853 0.96536 1.21283 0.90170 1.38494 1.06858 0.91869 1.25474 0.95604 0.95910 0.99739 1.69957 1.10061 1.46172 1.30851 0.86112 0.79183 0.79969 0.78778 1.18676 1.22020 1.19152 1.45888 1.15511 1.56202 1.17178 1.21173 0.81895 0.79358 0.90458 1.90748 1.51909 1.59866 1.41762 1.21755 0.79825 1.03181 0.95805 1.48103 1.06647 1.07099 1.52988 1.22842 0.96738 0.87890 1.01181 1.19551 0.93664 0.95277 1.14393 1.20225 0.89136 0.95030 1.05544 1.23034 0.97587 1.03598 0.97469 1.23032 1.01869 1.03519 0.92054 1.24046 0.98794 0.92231 1.00317 1.77437 0.92493 1.21916 1.21545 0.92734 0.92689 0.95198 0.90992 0.94032 0.92065 0.75336 0.81682 0.84613 0.77380 0.86183 0.89295 0.87513 0.87247 0.89554 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.14 -5.93 5.11 30.60 0.16 -5.77 16 3 C 0.25 11.74 1.83 44.24 0.08 11.82 16 4 H 0.02 0.89 6.62 -2.39 -0.02 0.87 16 5 C -0.53 -28.13 9.31 25.60 0.24 -27.90 16 6 H 0.06 3.50 7.98 -2.92 -0.02 3.48 16 7 C 0.03 1.83 5.45 84.66 0.46 2.29 16 8 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 9 Si 0.93 45.19 24.42 68.60 1.68 46.86 16 10 H -0.26 -11.97 6.82 99.48 0.68 -11.29 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.27 -13.09 6.53 99.48 0.65 -12.44 16 13 N -0.70 -25.11 5.02 -446.09 -2.24 -27.35 16 14 C 0.49 16.73 6.43 87.66 0.56 17.29 16 15 O -0.56 -24.99 12.86 -3.05 -0.04 -25.03 16 16 C 0.12 2.66 6.99 85.63 0.60 3.26 16 17 N -0.37 -9.88 3.39 -351.81 -1.19 -11.07 16 18 C 0.06 1.26 11.36 83.54 0.95 2.20 16 19 C -0.22 -4.92 5.76 -20.14 -0.12 -5.04 16 20 C -0.08 -1.34 6.25 -11.54 -0.07 -1.41 16 21 C -0.18 -2.68 10.02 30.60 0.31 -2.37 16 22 C -0.17 -2.32 10.23 30.60 0.31 -2.01 16 23 C 0.03 0.88 11.35 85.24 0.97 1.85 16 24 N -0.31 -10.32 11.66 -57.02 -0.66 -10.99 16 25 H 0.05 2.21 5.64 -2.39 -0.01 2.19 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 28 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.04 1.91 3.23 -2.39 -0.01 1.90 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.41 12.13 8.54 -92.71 -0.79 11.34 16 32 H 0.17 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.41 6.98 -2.39 -0.02 1.39 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.19 4.20 7.19 -2.91 -0.02 4.18 16 Total: -1.00 -74.87 325.86 3.08 -71.79 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.18 Total: 21.17 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.06 Total: -10.43 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.80 Total: -104.36 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.68 Total: 46.86 kcal Total: -74.87 3.08 -71.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.383 kcal (2) G-P(sol) polarization free energy of solvation -74.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds