Wall clock time and date at job start Mon Mar 30 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 H 1.09002 * 109.46901 * 54.99842 * 3 2 1 5 5 C 1.50694 * 109.47384 * 174.99973 * 3 2 1 6 6 H 1.07998 * 120.00315 * 119.99747 * 5 3 2 7 7 C 1.37877 * 119.99781 * 300.00459 * 5 3 2 8 8 N 1.31523 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00536 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46949 * 89.99824 * 9 7 5 11 11 H 1.48494 * 109.47553 * 210.00173 * 9 7 5 12 12 H 1.48503 * 109.46950 * 330.00687 * 9 7 5 13 13 N 1.46496 * 109.46844 * 295.00301 * 3 2 1 14 14 C 1.34777 * 120.00266 * 85.00291 * 13 3 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 3 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 3 17 17 H 1.08995 * 115.54837 * 34.28084 * 16 14 13 18 18 C 1.52993 * 117.49875 * 248.60464 * 16 14 13 19 19 C 1.52998 * 60.00221 * 252.51552 * 18 16 14 20 20 H 1.08999 * 117.50125 * 107.49073 * 19 18 16 21 21 C 1.50702 * 117.49736 * 252.51527 * 19 18 16 22 22 C 1.34661 * 126.59434 * 33.30224 * 21 19 18 23 23 N 1.34125 * 108.02361 * 179.88149 * 22 21 19 24 24 C 1.30496 * 109.25481 * 0.39531 * 23 22 21 25 25 N 1.35042 * 108.70025 * 359.75926 * 24 23 22 26 26 C 1.46496 * 126.39857 * 179.97438 * 25 24 23 27 27 H 1.09009 * 109.46899 * 300.00200 * 1 2 3 28 28 H 1.08994 * 109.47157 * 59.99495 * 1 2 3 29 29 H 1.08997 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46772 * 239.99345 * 2 1 3 31 31 H 1.09004 * 109.46647 * 120.00258 * 2 1 3 32 32 H 0.96994 * 120.00114 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99691 * 264.99277 * 13 3 2 34 34 H 1.09005 * 117.50007 * 359.97438 * 18 16 14 35 35 H 1.09006 * 117.50318 * 144.99828 * 18 16 14 36 36 H 1.08005 * 125.98843 * 0.02662 * 22 21 19 37 37 H 1.08002 * 125.65065 * 179.73465 * 24 23 22 38 38 H 1.08998 * 109.47113 * 270.00366 * 26 25 24 39 39 H 1.08997 * 109.47134 * 29.99863 * 26 25 24 40 40 H 1.08998 * 109.47530 * 149.99930 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1098 2.5707 10 1 2.8745 -1.3263 2.2644 11 1 3.7941 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3375 2.6367 -0.4325 16 6 0.0368 3.3386 -2.6545 17 1 0.4304 2.8850 -3.5640 18 6 -0.1221 4.8602 -2.6354 19 6 -1.3584 3.9630 -2.7225 20 1 -1.9880 3.8862 -1.8361 21 6 -2.0835 3.9039 -4.0423 22 6 -1.5308 3.9959 -5.2668 23 7 -2.5132 3.8945 -6.1743 24 6 -3.6548 3.7515 -5.5584 25 7 -3.4314 3.7522 -4.2266 26 6 -4.4427 3.6166 -3.1755 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8771 0.4809 2.1124 33 1 2.2720 2.1231 -1.9977 34 1 0.0612 5.3736 -1.6914 35 1 0.1671 5.4078 -3.5325 36 1 -0.4801 4.1261 -5.4807 37 1 -4.6187 3.6499 -6.0350 38 1 -4.8106 4.6037 -2.8957 39 1 -5.2708 3.0113 -3.5440 40 1 -3.9992 3.1339 -2.3046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:33 Heat of formation + Delta-G solvation = 51.133695 kcal Electronic energy + Delta-G solvation = -21438.162178 eV Core-core repulsion = 18255.053911 eV Total energy + Delta-G solvation = -3183.108267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26015 -39.58415 -36.82926 -35.07061 -34.17710 -32.38817 -31.52276 -29.47022 -27.65201 -27.17680 -24.37888 -23.33205 -22.54060 -21.51471 -20.50555 -19.65116 -19.41300 -17.67452 -17.13748 -16.12046 -15.86674 -15.64892 -15.04851 -14.84031 -14.25798 -14.07812 -13.68586 -13.54763 -13.20840 -13.11583 -12.93801 -12.51349 -12.27269 -12.00491 -11.87342 -11.80162 -11.18808 -11.00015 -10.90821 -10.66099 -10.52183 -10.08842 -9.94707 -9.68885 -9.59721 -9.26294 -9.17329 -8.77152 -8.32438 -8.09111 -6.22621 -4.25207 1.78277 2.57137 2.91875 3.09053 3.21666 3.33570 3.37968 3.79096 4.06435 4.29617 4.47534 4.48138 4.55839 4.73944 4.85988 4.94572 5.04261 5.10849 5.16610 5.19114 5.40790 5.52359 5.68179 5.91760 5.94029 5.98257 5.99870 6.15408 6.28439 6.58389 6.63490 6.66658 6.81822 6.92521 7.01807 7.25003 7.27795 7.49565 7.92895 8.13931 8.51738 8.74644 8.92235 9.38119 10.89452 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.003903 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.217576 B = 7171.573777 C = 7548.120915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.694 5.694 14 C 0.532 3.468 15 O -0.553 6.553 16 C -0.168 4.168 17 H 0.125 0.875 18 C -0.132 4.132 19 C -0.061 4.061 20 H 0.123 0.877 21 C 0.016 3.984 22 C -0.027 4.027 23 N -0.493 5.493 24 C 0.175 3.825 25 N -0.457 5.457 26 C 0.069 3.931 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.396 0.604 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.169 0.831 37 H 0.204 0.796 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 5.570 -9.621 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.341 5.341 14 C 0.317 3.683 15 O -0.433 6.433 16 C -0.190 4.190 17 H 0.143 0.857 18 C -0.170 4.170 19 C -0.081 4.081 20 H 0.141 0.859 21 C -0.098 4.098 22 C -0.175 4.175 23 N -0.210 5.210 24 C -0.107 4.107 25 N -0.140 5.140 26 C -0.074 4.074 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.186 0.814 37 H 0.221 0.779 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.580 5.486 -9.569 20.754 hybrid contribution -0.254 -0.679 1.234 1.431 sum -17.834 4.807 -8.335 20.264 Atomic orbital electron populations 1.21871 0.97029 0.98994 1.02176 1.22291 0.94302 1.00013 1.01147 1.19155 0.95653 0.88453 0.82814 0.93339 1.21055 0.88597 1.39816 1.07868 0.90124 1.24837 0.94862 0.95145 0.97668 1.69869 1.08674 1.44463 1.29840 0.86904 0.80927 0.79960 0.80930 1.20244 1.22152 1.18524 1.46091 1.14568 1.55414 1.18008 1.19396 0.82533 0.78750 0.87583 1.90646 1.51870 1.60460 1.40313 1.22482 0.99971 0.97276 0.99272 0.85742 1.23102 0.98570 0.90888 1.04463 1.20115 0.89461 1.04933 0.93611 0.85949 1.20357 0.83095 1.10093 0.96296 1.22000 0.99187 1.08624 0.87674 1.70267 0.98274 1.19174 1.33328 1.24893 0.99729 1.06703 0.79359 1.45208 1.06807 1.53938 1.08069 1.22085 0.91015 1.03440 0.90817 0.92944 0.92944 0.95020 0.92259 0.92768 0.92271 0.77007 0.87455 0.87422 0.81420 0.77922 0.90405 0.89391 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 37.16 0.32 -2.54 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.64 1.83 -69.09 -0.13 5.51 16 4 H 0.05 1.25 6.63 -51.93 -0.34 0.90 16 5 C -0.54 -14.27 9.31 -34.44 -0.32 -14.59 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 9 Si 0.88 21.55 24.41 -169.99 -4.15 17.41 16 10 H -0.28 -6.53 6.83 56.52 0.39 -6.15 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.69 -13.32 5.02 -54.94 -0.28 -13.59 16 14 C 0.53 9.46 6.17 -10.98 -0.07 9.39 16 15 O -0.55 -11.42 13.42 5.56 0.07 -11.35 16 16 C -0.17 -2.23 5.72 -91.77 -0.52 -2.75 16 17 H 0.12 1.45 7.98 -51.93 -0.41 1.04 16 18 C -0.13 -1.49 9.75 -26.74 -0.26 -1.75 16 19 C -0.06 -0.75 5.53 -91.77 -0.51 -1.25 16 20 H 0.12 1.59 6.93 -51.93 -0.36 1.23 16 21 C 0.02 0.19 6.63 -81.60 -0.54 -0.35 16 22 C -0.03 -0.34 10.94 -17.82 -0.19 -0.54 16 23 N -0.49 -6.53 11.25 -14.67 -0.17 -6.69 16 24 C 0.17 1.81 12.56 -90.38 -1.14 0.67 16 25 N -0.46 -4.67 3.15 -121.37 -0.38 -5.05 16 26 C 0.07 0.45 10.96 59.84 0.66 1.11 16 27 H 0.05 1.10 7.85 -51.92 -0.41 0.69 16 28 H 0.05 1.02 5.65 -51.93 -0.29 0.73 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.40 6.77 8.54 -40.82 -0.35 6.42 16 34 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.11 1.01 7.94 -51.93 -0.41 0.60 16 36 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.66 7.38 -51.93 -0.38 0.28 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -33.16 325.40 -7.85 -41.01 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.69 Total: 7.01 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.94 Total: -8.19 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.05 Total: -50.79 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.16 -7.85 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.148 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds