Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 H 1.09002 * 109.46901 * 54.99842 * 3 2 1 5 5 C 1.50694 * 109.47384 * 174.99973 * 3 2 1 6 6 H 1.07998 * 120.00315 * 119.99747 * 5 3 2 7 7 C 1.37877 * 119.99781 * 300.00459 * 5 3 2 8 8 N 1.31523 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00536 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46949 * 89.99824 * 9 7 5 11 11 H 1.48494 * 109.47553 * 210.00173 * 9 7 5 12 12 H 1.48503 * 109.46950 * 330.00687 * 9 7 5 13 13 N 1.46496 * 109.46844 * 295.00301 * 3 2 1 14 14 C 1.34777 * 120.00266 * 85.00291 * 13 3 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 3 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 3 17 17 H 1.08995 * 115.54837 * 34.28084 * 16 14 13 18 18 C 1.52993 * 117.49875 * 248.60464 * 16 14 13 19 19 C 1.52998 * 60.00221 * 252.51552 * 18 16 14 20 20 H 1.08999 * 117.50125 * 107.49073 * 19 18 16 21 21 C 1.50702 * 117.49736 * 252.51527 * 19 18 16 22 22 C 1.34661 * 126.59434 * 33.30224 * 21 19 18 23 23 N 1.34125 * 108.02361 * 179.88149 * 22 21 19 24 24 C 1.30496 * 109.25481 * 0.39531 * 23 22 21 25 25 N 1.35042 * 108.70025 * 359.75926 * 24 23 22 26 26 C 1.46496 * 126.39857 * 179.97438 * 25 24 23 27 27 H 1.09009 * 109.46899 * 300.00200 * 1 2 3 28 28 H 1.08994 * 109.47157 * 59.99495 * 1 2 3 29 29 H 1.08997 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46772 * 239.99345 * 2 1 3 31 31 H 1.09004 * 109.46647 * 120.00258 * 2 1 3 32 32 H 0.96994 * 120.00114 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99691 * 264.99277 * 13 3 2 34 34 H 1.09005 * 117.50007 * 359.97438 * 18 16 14 35 35 H 1.09006 * 117.50318 * 144.99828 * 18 16 14 36 36 H 1.08005 * 125.98843 * 0.02662 * 22 21 19 37 37 H 1.08002 * 125.65065 * 179.73465 * 24 23 22 38 38 H 1.08998 * 109.47113 * 270.00366 * 26 25 24 39 39 H 1.08997 * 109.47134 * 29.99863 * 26 25 24 40 40 H 1.08998 * 109.47530 * 149.99930 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1098 2.5707 10 1 2.8745 -1.3263 2.2644 11 1 3.7941 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3375 2.6367 -0.4325 16 6 0.0368 3.3386 -2.6545 17 1 0.4304 2.8850 -3.5640 18 6 -0.1221 4.8602 -2.6354 19 6 -1.3584 3.9630 -2.7225 20 1 -1.9880 3.8862 -1.8361 21 6 -2.0835 3.9039 -4.0423 22 6 -1.5308 3.9959 -5.2668 23 7 -2.5132 3.8945 -6.1743 24 6 -3.6548 3.7515 -5.5584 25 7 -3.4314 3.7522 -4.2266 26 6 -4.4427 3.6166 -3.1755 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.8771 0.4809 2.1124 33 1 2.2720 2.1231 -1.9977 34 1 0.0612 5.3736 -1.6914 35 1 0.1671 5.4078 -3.5325 36 1 -0.4801 4.1261 -5.4807 37 1 -4.6187 3.6499 -6.0350 38 1 -4.8106 4.6037 -2.8957 39 1 -5.2708 3.0113 -3.5440 40 1 -3.9992 3.1339 -2.3046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = 29.723460 kcal Electronic energy + Delta-G solvation = -21439.090595 eV Core-core repulsion = 18255.053911 eV Total energy + Delta-G solvation = -3184.036685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.06953 -40.99877 -38.10381 -36.67206 -34.90372 -34.38546 -33.19837 -30.37547 -29.48780 -27.79610 -25.77217 -24.39262 -24.16642 -22.33914 -22.05101 -21.12398 -20.39834 -19.13286 -18.25816 -17.69897 -17.32866 -16.58475 -16.44013 -16.24539 -15.52297 -15.23983 -15.06727 -14.84468 -14.47159 -14.15411 -13.81527 -13.75715 -13.71056 -13.54424 -13.36899 -12.98095 -12.77871 -12.75075 -12.41896 -11.98880 -11.86223 -11.58652 -11.39260 -11.24239 -10.95278 -10.86621 -10.69401 -10.45287 -9.75916 -9.19969 -8.38137 -6.43711 0.94956 1.26608 1.34573 1.44164 1.66009 1.87303 2.16124 2.25596 2.45640 2.96669 3.03345 3.52038 3.69994 3.89971 3.90834 3.98146 4.12621 4.16507 4.22929 4.31187 4.38812 4.42124 4.47388 4.66084 4.72618 4.77813 4.84159 4.96943 5.00019 5.09410 5.11274 5.22078 5.40929 5.44293 5.50454 5.67588 5.74783 6.14697 6.30754 6.58886 6.90801 7.11528 7.19539 7.47612 8.77112 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.003903 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.217576 B = 7171.573777 C = 7548.120915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.023 0.977 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.261 1.261 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.532 3.468 15 O -0.583 6.583 16 C -0.174 4.174 17 H 0.143 0.857 18 C -0.117 4.117 19 C -0.051 4.051 20 H 0.113 0.887 21 C 0.002 3.998 22 C -0.040 4.040 23 N -0.533 5.533 24 C 0.183 3.817 25 N -0.459 5.459 26 C 0.064 3.936 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.270 0.730 33 H 0.406 0.594 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.176 0.824 37 H 0.241 0.759 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 5.438 -10.496 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.041 0.959 5 C -0.572 4.572 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.320 3.680 15 O -0.464 6.464 16 C -0.195 4.195 17 H 0.161 0.839 18 C -0.155 4.155 19 C -0.071 4.071 20 H 0.131 0.869 21 C -0.113 4.113 22 C -0.187 4.187 23 N -0.251 5.251 24 C -0.099 4.099 25 N -0.141 5.141 26 C -0.078 4.078 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.241 0.759 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.193 0.807 37 H 0.257 0.743 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.973 5.361 -10.459 23.175 hybrid contribution 0.442 -0.567 1.442 1.611 sum -19.531 4.794 -9.018 22.040 Atomic orbital electron populations 1.21748 0.95195 1.00483 1.01551 1.22215 0.95872 0.98600 1.00981 1.18776 0.93148 0.89587 0.83947 0.95871 1.21305 0.90421 1.38525 1.06934 0.92564 1.25559 0.95731 0.95895 0.99880 1.69980 1.10289 1.46147 1.30881 0.86028 0.79320 0.79907 0.78331 1.18645 1.22063 1.18399 1.45951 1.15666 1.55835 1.17009 1.20048 0.81372 0.77816 0.88762 1.90629 1.52508 1.61351 1.41913 1.22362 1.01495 0.98448 0.97226 0.83912 1.23209 0.97459 0.89520 1.05289 1.19996 0.89007 1.04470 0.93595 0.86899 1.20288 0.84134 1.11159 0.95713 1.22238 0.99785 1.08783 0.87910 1.70258 0.99435 1.21064 1.34393 1.25639 1.00407 1.04463 0.79380 1.45449 1.06748 1.53106 1.08840 1.22335 0.90830 1.04827 0.89774 0.94331 0.92796 0.92411 0.91466 0.93822 0.92090 0.75854 0.88009 0.85017 0.80671 0.74278 0.88951 0.86628 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.52 71.98 0.61 -4.42 16 2 C -0.14 -5.91 5.11 30.59 0.16 -5.76 16 3 C 0.25 11.64 1.83 44.24 0.08 11.72 16 4 H 0.02 1.21 6.63 -2.39 -0.02 1.20 16 5 C -0.53 -28.91 9.31 25.60 0.24 -28.67 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 9 Si 0.94 44.54 24.41 68.60 1.67 46.21 16 10 H -0.26 -11.69 6.83 99.48 0.68 -11.01 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.26 -12.18 6.53 99.48 0.65 -11.54 16 13 N -0.70 -26.52 5.02 -446.12 -2.24 -28.76 16 14 C 0.53 18.55 6.17 87.66 0.54 19.09 16 15 O -0.58 -23.83 13.42 -3.01 -0.04 -23.87 16 16 C -0.17 -4.35 5.72 -11.54 -0.07 -4.42 16 17 H 0.14 3.06 7.98 -2.39 -0.02 3.04 16 18 C -0.12 -2.44 9.75 30.59 0.30 -2.14 16 19 C -0.05 -1.16 5.53 -11.54 -0.06 -1.22 16 20 H 0.11 2.82 6.93 -2.39 -0.02 2.80 16 21 C 0.00 0.05 6.63 40.95 0.27 0.32 16 22 C -0.04 -0.93 10.94 83.52 0.91 -0.02 16 23 N -0.53 -13.18 11.25 -200.32 -2.25 -15.44 16 24 C 0.18 3.29 12.56 180.26 2.26 5.56 16 25 N -0.46 -8.27 3.15 -537.91 -1.70 -9.96 16 26 C 0.06 0.67 10.96 127.77 1.40 2.07 16 27 H 0.04 1.55 7.85 -2.38 -0.02 1.54 16 28 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.04 1.96 3.22 -2.39 -0.01 1.95 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.41 13.76 8.54 -92.71 -0.79 12.97 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.13 2.13 7.94 -2.38 -0.02 2.11 16 36 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.24 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 1.03 7.38 -2.39 -0.02 1.01 16 Total: -1.00 -72.03 325.40 3.03 -69.00 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.18 Total: 24.27 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 7.11 Total: -5.80 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.89 Total: -109.81 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.87 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.21 kcal Total: -72.03 3.03 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.719 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds