Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00385 * 2 1 4 4 N 1.46497 * 109.47387 * 122.78823 * 3 2 1 5 5 C 1.46501 * 120.00230 * 262.23408 * 4 3 2 6 6 C 1.50691 * 109.46977 * 269.99938 * 5 4 3 7 7 H 1.07999 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.37887 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47132 * 89.99657 * 10 8 6 12 12 H 1.48502 * 109.47150 * 210.00140 * 10 8 6 13 13 H 1.48499 * 109.46992 * 329.99888 * 10 8 6 14 14 C 1.34779 * 120.00004 * 82.23430 * 4 3 2 15 15 O 1.21630 * 119.99934 * 181.21384 * 14 4 3 16 16 C 1.47162 * 119.99879 * 1.21626 * 14 4 3 17 17 C 1.38403 * 126.88461 * 350.49492 * 16 14 4 18 18 C 1.39672 * 105.36313 * 179.97438 * 17 16 14 19 19 N 1.30869 * 107.85539 * 359.74669 * 18 17 16 20 20 N 1.28436 * 110.93118 * 0.43654 * 19 18 17 21 21 C 1.46502 * 125.19305 * 179.81898 * 20 19 18 22 22 C 1.52995 * 109.46929 * 274.17275 * 21 20 19 23 23 C 1.53008 * 109.47023 * 184.96150 * 22 21 20 24 24 H 1.08004 * 119.99535 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.00683 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99943 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47091 * 2.79231 * 3 2 1 28 28 H 1.08999 * 109.47374 * 242.79110 * 3 2 1 29 29 H 1.08997 * 109.46880 * 29.99988 * 5 4 3 30 30 H 1.09005 * 109.46865 * 149.99959 * 5 4 3 31 31 H 0.96998 * 119.99699 * 180.02562 * 9 8 6 32 32 H 1.08005 * 127.31796 * 0.02562 * 17 16 14 33 33 H 1.07999 * 126.07395 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47124 * 154.16745 * 21 20 19 35 35 H 1.09000 * 109.47069 * 34.17081 * 21 20 19 36 36 H 1.09000 * 109.47432 * 64.96262 * 22 21 20 37 37 H 1.09003 * 109.47298 * 304.95686 * 22 21 20 38 38 H 1.09005 * 109.46909 * 55.03157 * 23 22 21 39 39 H 1.08999 * 109.47234 * 175.03206 * 23 22 21 40 40 H 1.09003 * 109.47176 * 295.03480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9555 1.3540 1.1611 5 6 2.5403 2.0624 2.3744 6 6 2.9814 3.5009 2.2919 7 1 3.5177 3.8524 1.4229 8 6 2.7002 4.3686 3.3260 9 7 2.0476 3.9405 4.3846 10 14 3.2462 6.1520 3.2235 11 1 2.1775 6.9610 2.5842 12 1 3.5076 6.6691 4.5909 13 1 4.4878 6.2438 2.4140 14 6 4.1580 0.7473 1.1131 15 8 4.8894 0.7691 2.0848 16 6 4.5862 0.0586 -0.1149 17 6 3.8107 -0.2127 -1.2287 18 6 4.6598 -0.8746 -2.1185 19 7 5.8371 -0.9690 -1.5547 20 7 5.8289 -0.4407 -0.3841 21 6 6.9786 -0.3775 0.5217 22 6 7.0591 -1.6712 1.3345 23 6 8.1832 -1.5562 2.3662 24 1 -0.5399 0.9354 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3563 2.1330 0.0501 28 1 2.6521 1.3848 -0.9139 29 1 1.4551 2.0197 2.4666 30 1 2.9978 1.5914 3.2446 31 1 1.8495 4.5509 5.1118 32 1 2.7703 0.0356 -1.3783 33 1 4.3932 -1.2401 -3.0992 34 1 6.8625 0.4697 1.1976 35 1 7.8927 -0.2560 -0.0593 36 1 7.2633 -2.5079 0.6664 37 1 6.1116 -1.8381 1.8468 38 1 8.0253 -0.6681 2.9781 39 1 8.1838 -2.4408 3.0030 40 1 9.1413 -1.4777 1.8523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = 80.990175 kcal Electronic energy + Delta-G solvation = -22025.904889 eV Core-core repulsion = 18844.091296 eV Total energy + Delta-G solvation = -3181.813593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33944 -38.86991 -36.24695 -35.05065 -33.37697 -32.14244 -31.37794 -30.69780 -27.47834 -26.55069 -25.69811 -23.61821 -22.04273 -21.87192 -20.82549 -19.88827 -18.75429 -16.97993 -16.57677 -16.01159 -15.65227 -15.27531 -15.11571 -14.86144 -14.36092 -14.13488 -13.79719 -13.36271 -13.13761 -12.79003 -12.41863 -12.20282 -12.10711 -11.99002 -11.44550 -11.37543 -11.32930 -11.08467 -10.91746 -10.75360 -10.68519 -10.32873 -10.22618 -9.70959 -9.29551 -9.20410 -8.94417 -8.67607 -8.48021 -7.78968 -6.09338 -4.14521 1.66710 2.34806 2.68965 2.84099 3.27265 3.34070 3.38191 3.75186 3.94325 4.40535 4.68177 4.86180 4.90018 5.06732 5.19669 5.21191 5.25251 5.37810 5.41707 5.44913 5.60980 5.63516 5.73401 5.82382 5.93467 5.99475 6.04056 6.13532 6.17678 6.24047 6.70065 6.77316 6.86951 6.97638 7.00701 7.35661 7.44172 7.86390 8.15851 8.20574 8.32952 8.78585 8.94793 9.50629 10.98688 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.006173 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.234236 B = 4534.451000 C = 5699.968813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.115 3.885 4 N -0.571 5.571 5 C 0.249 3.751 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.575 3.425 15 O -0.539 6.539 16 C -0.018 4.018 17 C -0.224 4.224 18 C -0.012 4.012 19 N -0.290 5.290 20 N -0.259 5.259 21 C 0.116 3.884 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -9.864 -10.376 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C -0.009 4.009 4 N -0.301 5.301 5 C 0.130 3.870 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.361 3.639 15 O -0.418 6.418 16 C -0.147 4.147 17 C -0.252 4.252 18 C -0.188 4.188 19 N -0.123 5.123 20 N -0.046 5.046 21 C -0.004 4.004 22 C -0.169 4.169 23 C -0.205 4.205 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.201 0.799 33 H 0.198 0.802 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.554 -10.142 -9.714 14.763 hybrid contribution -0.660 1.236 0.041 1.402 sum 3.894 -8.906 -9.673 13.713 Atomic orbital electron populations 1.23865 0.95773 1.01863 0.99777 1.23511 0.96407 0.99274 1.00473 1.21236 0.93963 0.95451 0.90230 1.47951 1.14489 1.50948 1.16688 1.19384 0.95733 0.91043 0.80829 1.21416 1.36987 0.94146 1.04227 0.92354 1.24923 0.95022 0.99007 0.95000 1.69932 1.40129 1.35682 1.07439 0.86495 0.79051 0.84466 0.77415 1.20555 1.21051 1.19902 1.16913 0.82662 0.79212 0.85148 1.90746 1.52920 1.61539 1.36556 1.21851 0.87473 1.06445 0.98959 1.23354 1.02539 1.05861 0.93454 1.23553 0.89616 1.04244 1.01385 1.73100 1.25147 1.18315 0.95691 1.45766 1.09014 1.38679 1.11123 1.22270 0.85292 1.01707 0.91084 1.21775 1.00877 0.96253 0.97996 1.21664 0.97376 1.02814 0.98607 0.88211 0.88629 0.87046 0.89112 0.88821 0.94533 0.93556 0.92640 0.79903 0.80196 0.86316 0.89033 0.91612 0.90916 0.91614 0.92141 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.18 -2.47 7.74 -36.02 -0.28 -2.75 16 3 C 0.11 1.87 5.39 -5.19 -0.03 1.84 16 4 N -0.57 -12.06 2.46 -177.81 -0.44 -12.50 16 5 C 0.25 6.36 5.13 -5.20 -0.03 6.33 16 6 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.58 12.25 7.56 -12.64 -0.10 12.16 16 15 O -0.54 -13.02 14.32 5.25 0.08 -12.94 16 16 C -0.02 -0.33 6.80 -82.06 -0.56 -0.88 16 17 C -0.22 -3.29 7.65 -38.99 -0.30 -3.59 16 18 C -0.01 -0.16 12.03 -17.43 -0.21 -0.37 16 19 N -0.29 -4.58 11.90 30.59 0.36 -4.21 16 20 N -0.26 -4.32 3.35 -57.14 -0.19 -4.51 16 21 C 0.12 1.72 5.84 -4.04 -0.02 1.70 16 22 C -0.13 -1.73 6.26 -26.73 -0.17 -1.90 16 23 C -0.15 -1.63 9.91 37.16 0.37 -1.27 16 24 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 25 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 26 H 0.11 1.54 6.91 -52.49 -0.36 1.18 16 27 H 0.09 1.49 7.66 -51.93 -0.40 1.10 16 28 H 0.09 1.38 4.87 -51.93 -0.25 1.12 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.18 2.33 3.42 -52.48 -0.18 2.15 16 33 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.99 6.29 -51.93 -0.33 1.66 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -31.92 333.19 -6.44 -38.36 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.66 Total: 3.38 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.32 Total: -3.80 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.47 Total: -46.51 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.92 -6.44 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.351 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds