Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00385 * 2 1 4 4 N 1.46497 * 109.47387 * 122.78823 * 3 2 1 5 5 C 1.46501 * 120.00230 * 262.23408 * 4 3 2 6 6 C 1.50691 * 109.46977 * 269.99938 * 5 4 3 7 7 H 1.07999 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.37887 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47132 * 89.99657 * 10 8 6 12 12 H 1.48502 * 109.47150 * 210.00140 * 10 8 6 13 13 H 1.48499 * 109.46992 * 329.99888 * 10 8 6 14 14 C 1.34779 * 120.00004 * 82.23430 * 4 3 2 15 15 O 1.21630 * 119.99934 * 181.21384 * 14 4 3 16 16 C 1.47162 * 119.99879 * 1.21626 * 14 4 3 17 17 C 1.38403 * 126.88461 * 350.49492 * 16 14 4 18 18 C 1.39672 * 105.36313 * 179.97438 * 17 16 14 19 19 N 1.30869 * 107.85539 * 359.74669 * 18 17 16 20 20 N 1.28436 * 110.93118 * 0.43654 * 19 18 17 21 21 C 1.46502 * 125.19305 * 179.81898 * 20 19 18 22 22 C 1.52995 * 109.46929 * 274.17275 * 21 20 19 23 23 C 1.53008 * 109.47023 * 184.96150 * 22 21 20 24 24 H 1.08004 * 119.99535 * 359.97438 * 1 2 3 25 25 H 1.07993 * 120.00683 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99943 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47091 * 2.79231 * 3 2 1 28 28 H 1.08999 * 109.47374 * 242.79110 * 3 2 1 29 29 H 1.08997 * 109.46880 * 29.99988 * 5 4 3 30 30 H 1.09005 * 109.46865 * 149.99959 * 5 4 3 31 31 H 0.96998 * 119.99699 * 180.02562 * 9 8 6 32 32 H 1.08005 * 127.31796 * 0.02562 * 17 16 14 33 33 H 1.07999 * 126.07395 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47124 * 154.16745 * 21 20 19 35 35 H 1.09000 * 109.47069 * 34.17081 * 21 20 19 36 36 H 1.09000 * 109.47432 * 64.96262 * 22 21 20 37 37 H 1.09003 * 109.47298 * 304.95686 * 22 21 20 38 38 H 1.09005 * 109.46909 * 55.03157 * 23 22 21 39 39 H 1.08999 * 109.47234 * 175.03206 * 23 22 21 40 40 H 1.09003 * 109.47176 * 295.03480 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9555 1.3540 1.1611 5 6 2.5403 2.0624 2.3744 6 6 2.9814 3.5009 2.2919 7 1 3.5177 3.8524 1.4229 8 6 2.7002 4.3686 3.3260 9 7 2.0476 3.9405 4.3846 10 14 3.2462 6.1520 3.2235 11 1 2.1775 6.9610 2.5842 12 1 3.5076 6.6691 4.5909 13 1 4.4878 6.2438 2.4140 14 6 4.1580 0.7473 1.1131 15 8 4.8894 0.7691 2.0848 16 6 4.5862 0.0586 -0.1149 17 6 3.8107 -0.2127 -1.2287 18 6 4.6598 -0.8746 -2.1185 19 7 5.8371 -0.9690 -1.5547 20 7 5.8289 -0.4407 -0.3841 21 6 6.9786 -0.3775 0.5217 22 6 7.0591 -1.6712 1.3345 23 6 8.1832 -1.5562 2.3662 24 1 -0.5399 0.9354 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3563 2.1330 0.0501 28 1 2.6521 1.3848 -0.9139 29 1 1.4551 2.0197 2.4666 30 1 2.9978 1.5914 3.2446 31 1 1.8495 4.5509 5.1118 32 1 2.7703 0.0356 -1.3783 33 1 4.3932 -1.2401 -3.0992 34 1 6.8625 0.4697 1.1976 35 1 7.8927 -0.2560 -0.0593 36 1 7.2633 -2.5079 0.6664 37 1 6.1116 -1.8381 1.8468 38 1 8.0253 -0.6681 2.9781 39 1 8.1838 -2.4408 3.0030 40 1 9.1413 -1.4777 1.8523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597684173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = 61.585104 kcal Electronic energy + Delta-G solvation = -22026.746356 eV Core-core repulsion = 18844.091296 eV Total energy + Delta-G solvation = -3182.655060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.57570 -40.49203 -37.70092 -36.22355 -35.26476 -33.74833 -32.51240 -32.09194 -29.35630 -27.71616 -27.02487 -25.51124 -23.23298 -23.11630 -22.29966 -21.04915 -20.08140 -18.67069 -18.38964 -17.49632 -16.95359 -16.94120 -16.44543 -16.02191 -15.99263 -15.63520 -15.13018 -14.63222 -14.31051 -14.25211 -14.09682 -13.71761 -13.37065 -13.21716 -13.03481 -12.98499 -12.65314 -12.56032 -12.37214 -12.26089 -12.21455 -11.82984 -11.72596 -11.52523 -10.88538 -10.65528 -10.41015 -10.21319 -9.89231 -9.52767 -8.24117 -6.38806 0.30116 1.20539 1.36735 1.38965 1.48986 1.50863 1.70610 2.19299 2.37221 2.44863 3.05971 3.48095 3.54603 3.80355 4.01204 4.02564 4.15251 4.22278 4.24461 4.36152 4.43690 4.53840 4.64539 4.74321 4.84788 4.87615 4.97990 5.00001 5.06418 5.09929 5.18671 5.26462 5.46986 5.57655 5.71592 5.74262 5.79263 5.92007 6.02301 6.55414 6.69401 7.07907 7.19668 7.34891 8.83158 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.006173 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.234236 B = 4534.451000 C = 5699.968813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.195 4.195 3 C 0.112 3.888 4 N -0.577 5.577 5 C 0.267 3.733 6 C -0.544 4.544 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.568 3.432 15 O -0.583 6.583 16 C -0.051 4.051 17 C -0.203 4.203 18 C -0.002 4.002 19 N -0.296 5.296 20 N -0.267 5.267 21 C 0.113 3.887 22 C -0.121 4.121 23 C -0.142 4.142 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.029 0.971 30 H 0.002 0.998 31 H 0.268 0.732 32 H 0.204 0.796 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 -10.240 -12.890 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.214 4.214 3 C -0.009 4.009 4 N -0.306 5.306 5 C 0.146 3.854 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.200 1.200 14 C 0.356 3.644 15 O -0.465 6.465 16 C -0.179 4.179 17 C -0.231 4.231 18 C -0.178 4.178 19 N -0.128 5.128 20 N -0.054 5.054 21 C -0.007 4.007 22 C -0.160 4.160 23 C -0.200 4.200 24 H 0.121 0.879 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.221 0.779 33 H 0.242 0.758 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.306 -10.530 -12.265 16.729 hybrid contribution -0.652 1.290 0.777 1.641 sum 3.654 -9.240 -11.488 15.189 Atomic orbital electron populations 1.24123 0.95196 1.03216 0.96492 1.23285 0.96852 0.97936 1.03366 1.21483 0.93587 0.96929 0.88912 1.47893 1.15467 1.50525 1.16723 1.18818 0.94558 0.90387 0.81623 1.21651 1.37088 0.95285 1.04259 0.92966 1.25801 0.94877 1.03529 0.94492 1.70044 1.40977 1.37338 1.08113 0.85442 0.78833 0.79129 0.77572 1.18716 1.20552 1.19981 1.17405 0.82140 0.78875 0.85984 1.90709 1.54115 1.63188 1.38461 1.21499 0.89120 1.08702 0.98624 1.23630 1.03200 1.04179 0.92077 1.24281 0.88290 1.02731 1.02490 1.73118 1.26284 1.18181 0.95226 1.45920 1.08886 1.38976 1.11649 1.22329 0.85873 1.01334 0.91132 1.21702 1.00113 0.95949 0.98221 1.21649 0.97655 1.02502 0.98183 0.87909 0.86166 0.86761 0.89563 0.87021 0.95280 0.97954 0.92302 0.77937 0.75828 0.89145 0.86603 0.90273 0.93980 0.93425 0.90968 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 14.32 67.79 0.97 -2.41 16 2 C -0.20 -5.13 7.74 25.65 0.20 -4.94 16 3 C 0.11 3.61 5.39 85.63 0.46 4.07 16 4 N -0.58 -25.23 2.46 -834.70 -2.06 -27.29 16 5 C 0.27 14.35 5.13 85.63 0.44 14.79 16 6 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 7 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 8 C 0.01 0.71 5.46 84.66 0.46 1.17 16 9 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 10 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 14 C 0.57 25.31 7.56 86.59 0.65 25.96 16 15 O -0.58 -30.23 14.32 -4.13 -0.06 -30.29 16 16 C -0.05 -1.84 6.80 40.79 0.28 -1.56 16 17 C -0.20 -5.52 7.65 22.66 0.17 -5.35 16 18 C 0.00 -0.05 12.03 85.18 1.02 0.97 16 19 N -0.30 -8.67 11.90 -57.14 -0.68 -9.35 16 20 N -0.27 -8.79 3.35 -334.70 -1.12 -9.91 16 21 C 0.11 3.40 5.84 86.38 0.50 3.90 16 22 C -0.12 -3.27 6.26 30.60 0.19 -3.07 16 23 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 24 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 25 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.11 2.97 6.91 -2.91 -0.02 2.95 16 27 H 0.09 2.81 7.66 -2.39 -0.02 2.80 16 28 H 0.11 3.12 4.87 -2.39 -0.01 3.11 16 29 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.00 0.15 7.40 -2.38 -0.02 0.13 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.20 4.60 3.42 -2.91 -0.01 4.59 16 33 H 0.23 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.09 3.25 6.29 -2.39 -0.02 3.23 16 35 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.25 333.19 5.74 -66.51 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.03 Total: 18.57 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.31 Total: 0.19 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -3.57 Total: -101.52 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.25 5.74 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.097 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds